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Volumn 32, Issue 3, 2009, Pages 207-219

Preanalytic removal of human DNA eliminates false signals in general 16S rDNA PCR monitoring of bacterial pathogens in blood

Author keywords

16S rDNA; Bacterial blood stream infection; Human DNA background; PCR; Unspecific signals

Indexed keywords

BACTERIAL DNA; DNA 16S;

EID: 61449237550     PISSN: 01479571     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cimid.2007.10.005     Document Type: Article
Times cited : (68)

References (40)
  • 1
    • 33744951908 scopus 로고    scopus 로고
    • System for predicting outcome and for clinical evaluation in sepsis and septic shock: could scores and biochemical markers be of greater help in the future?
    • Gentili A., Iannella E., Giuntoli L., and Baroncini S. System for predicting outcome and for clinical evaluation in sepsis and septic shock: could scores and biochemical markers be of greater help in the future?. Med Sci Monit 12 (2006) 11-12
    • (2006) Med Sci Monit , vol.12 , pp. 11-12
    • Gentili, A.1    Iannella, E.2    Giuntoli, L.3    Baroncini, S.4
  • 2
    • 0019156218 scopus 로고    scopus 로고
    • Homologies among ribosomal RNA and messenger RNA genes in chloroplasts, mitochondria and E. coli
    • Bohnert H.J., Gordon K.H., and Crouse E.J. Homologies among ribosomal RNA and messenger RNA genes in chloroplasts, mitochondria and E. coli. Mol Gen Genet 179 (1998) 539-545
    • (1998) Mol Gen Genet , vol.179 , pp. 539-545
    • Bohnert, H.J.1    Gordon, K.H.2    Crouse, E.J.3
  • 6
    • 0025297197 scopus 로고
    • Frequent contamination of Taq polymerase with DNA
    • Bottger E.C. Frequent contamination of Taq polymerase with DNA. Clin Chem 36 (1990) 1258-1259
    • (1990) Clin Chem , vol.36 , pp. 1258-1259
    • Bottger, E.C.1
  • 7
    • 11844281571 scopus 로고    scopus 로고
    • Presence of beta-lactamase gene TEM-1 DNA sequence in commercial Taq DNA polymerase
    • Chiang C.S., Liu C.P., Weng L.C., Wang N.Y., and Liaw G.J. Presence of beta-lactamase gene TEM-1 DNA sequence in commercial Taq DNA polymerase. J Clin Microbiol 43 (2005) 530-541
    • (2005) J Clin Microbiol , vol.43 , pp. 530-541
    • Chiang, C.S.1    Liu, C.P.2    Weng, L.C.3    Wang, N.Y.4    Liaw, G.J.5
  • 9
    • 33646825237 scopus 로고    scopus 로고
    • Removal of contaminating TEM-la beta-lactamase gene from commercial Taq DNA polymerase
    • Song J.S., Lee J.H., Jeong B.C., Lee W.K., and Lee S.H. Removal of contaminating TEM-la beta-lactamase gene from commercial Taq DNA polymerase. J Microbiol 44 (2006) 126-128
    • (2006) J Microbiol , vol.44 , pp. 126-128
    • Song, J.S.1    Lee, J.H.2    Jeong, B.C.3    Lee, W.K.4    Lee, S.H.5
  • 10
    • 12744272142 scopus 로고    scopus 로고
    • Diagnostic PCR validation and sample preparation are two sides of the same coin
    • Hoorfar J., Wolffs P., and Radstrom P. Diagnostic PCR validation and sample preparation are two sides of the same coin. APMIS 112 (2006) 808-814
    • (2006) APMIS , vol.112 , pp. 808-814
    • Hoorfar, J.1    Wolffs, P.2    Radstrom, P.3
  • 11
    • 0037169874 scopus 로고    scopus 로고
    • Evaluation of selective enrichment PCR procedures for Yersinia enterocolitica
    • Knutsson R., Blixt Y., Grage H., Borch E., and Radstrom P. Evaluation of selective enrichment PCR procedures for Yersinia enterocolitica. Int J Food Microbiol 73 (2002) 35-46
    • (2002) Int J Food Microbiol , vol.73 , pp. 35-46
    • Knutsson, R.1    Blixt, Y.2    Grage, H.3    Borch, E.4    Radstrom, P.5
  • 12
    • 1542513866 scopus 로고    scopus 로고
    • Rapid quantification of Yersinia enterocolitica in pork samples by a novel sample preparation method, flotation, prior to real-time PCR
    • Wolffs P., Knutsson R., Norling B., and Radstrom P. Rapid quantification of Yersinia enterocolitica in pork samples by a novel sample preparation method, flotation, prior to real-time PCR. J Clin Microbiol 42 (2004) 1042-1047
    • (2004) J Clin Microbiol , vol.42 , pp. 1042-1047
    • Wolffs, P.1    Knutsson, R.2    Norling, B.3    Radstrom, P.4
  • 13
    • 0842265257 scopus 로고    scopus 로고
    • Specificity and performance of PCR detection assays for microbial pathogens
    • Sachse K. Specificity and performance of PCR detection assays for microbial pathogens. Mol Biotechnol 26 (2004) 61-80
    • (2004) Mol Biotechnol , vol.26 , pp. 61-80
    • Sachse, K.1
  • 14
    • 1142285312 scopus 로고    scopus 로고
    • Identification of microorganisms by PCR amplification and sequencing of a universal amplified ribosomal region present in both prokaryotes and eukaryotes
    • Rivas R., Velazquez E., Zurdo-Pineiro J.L., Mateos P.F., and Martinez Molina E. Identification of microorganisms by PCR amplification and sequencing of a universal amplified ribosomal region present in both prokaryotes and eukaryotes. J Microbiol Methods 56 (2004) 413-426
    • (2004) J Microbiol Methods , vol.56 , pp. 413-426
    • Rivas, R.1    Velazquez, E.2    Zurdo-Pineiro, J.L.3    Mateos, P.F.4    Martinez Molina, E.5
  • 15
    • 0042698808 scopus 로고    scopus 로고
    • Interspecific evolution: microbial symbiosis, endosymbiosis and gene transfer
    • Hoffmeister M., and Martin W. Interspecific evolution: microbial symbiosis, endosymbiosis and gene transfer. Environ Microbiol 5 (2003) 641-649
    • (2003) Environ Microbiol , vol.5 , pp. 641-649
    • Hoffmeister, M.1    Martin, W.2
  • 16
    • 0033579466 scopus 로고    scopus 로고
    • Mammalian mitochondrial ribosomal proteins (2). Amino acid sequencing, characterization, and identification of corresponding gene sequences
    • O'Brien T.W., Fiesler S.E., Denslow N.D., Thiede B., Wittmann-Liebold B., Mougey E.B., et al. Mammalian mitochondrial ribosomal proteins (2). Amino acid sequencing, characterization, and identification of corresponding gene sequences. J Biol Chem 274 (1999) 36043-36051
    • (1999) J Biol Chem , vol.274 , pp. 36043-36051
    • O'Brien, T.W.1    Fiesler, S.E.2    Denslow, N.D.3    Thiede, B.4    Wittmann-Liebold, B.5    Mougey, E.B.6
  • 17
    • 0018277518 scopus 로고
    • Origins of prokaryotes, eukaryotes, mitochondria, and chloroplasts
    • Schwartz R.M., and Dayhoff M.O. Origins of prokaryotes, eukaryotes, mitochondria, and chloroplasts. Science 199 (1978) 395-403
    • (1978) Science , vol.199 , pp. 395-403
    • Schwartz, R.M.1    Dayhoff, M.O.2
  • 18
    • 0019310310 scopus 로고
    • Distinctive sequence of human mitochondrial ribosomal RNA genes
    • Eperon I.C., Anderson S., and Nierlich D.P. Distinctive sequence of human mitochondrial ribosomal RNA genes. Nature 286 (1980) 460-467
    • (1980) Nature , vol.286 , pp. 460-467
    • Eperon, I.C.1    Anderson, S.2    Nierlich, D.P.3
  • 19
    • 0036250920 scopus 로고    scopus 로고
    • Risk assessment models and contamination management: implications for broad-range ribosomal DNA PCR as a diagnostic tool in medical bacteriology
    • Millar B.C., Xu J., and Moore J.E. Risk assessment models and contamination management: implications for broad-range ribosomal DNA PCR as a diagnostic tool in medical bacteriology. J Clin Microbiol 40 (2002) 1575-1580
    • (2002) J Clin Microbiol , vol.40 , pp. 1575-1580
    • Millar, B.C.1    Xu, J.2    Moore, J.E.3
  • 20
    • 0031226764 scopus 로고    scopus 로고
    • One primer pair amplifies small subunit ribosomal DNA from mitochondria, plastids and bacteria. Mitochondria, plastids and bacteria
    • Berschick P. One primer pair amplifies small subunit ribosomal DNA from mitochondria, plastids and bacteria. Mitochondria, plastids and bacteria. Biotechniques 23 (1997) 494-498
    • (1997) Biotechniques , vol.23 , pp. 494-498
    • Berschick, P.1
  • 21
    • 0024623412 scopus 로고
    • Chloroplast ribosomal DNA organization in the chromophytic alga Olisthodiscus luteus
    • Delaney T.P., and Cattolico R.A. Chloroplast ribosomal DNA organization in the chromophytic alga Olisthodiscus luteus. Curr Genet 15 (1989) 221-229
    • (1989) Curr Genet , vol.15 , pp. 221-229
    • Delaney, T.P.1    Cattolico, R.A.2
  • 22
    • 0035106250 scopus 로고    scopus 로고
    • Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach
    • Koc E.C., Burkhart W., Blackburn K., Koc H., Moseley A., and Spremulli L.L. Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci 10 (2001) 471-481
    • (2001) Protein Sci , vol.10 , pp. 471-481
    • Koc, E.C.1    Burkhart, W.2    Blackburn, K.3    Koc, H.4    Moseley, A.5    Spremulli, L.L.6
  • 23
    • 0034693152 scopus 로고    scopus 로고
    • A proteomics approach to the identification of mammalian mitochondrial small subunit ribosomal proteins
    • Koc E.C., Burkhart W., Blackburn K., Moseley A., Koc H., and Spremulli L.L. A proteomics approach to the identification of mammalian mitochondrial small subunit ribosomal proteins. J Biol Chem 275 (2000) 32585-32591
    • (2000) J Biol Chem , vol.275 , pp. 32585-32591
    • Koc, E.C.1    Burkhart, W.2    Blackburn, K.3    Moseley, A.4    Koc, H.5    Spremulli, L.L.6
  • 24
    • 0017257679 scopus 로고
    • Sequence homologies in mammalian 5 8S ribosomal RNA
    • Nazar R.N., Sitz T.O., and Busch H. Sequence homologies in mammalian 5 8S ribosomal RNA. Biochemistry 15 (1976) 505-508
    • (1976) Biochemistry , vol.15 , pp. 505-508
    • Nazar, R.N.1    Sitz, T.O.2    Busch, H.3
  • 25
    • 0020026792 scopus 로고
    • Fragmentary 5S rRNA gene in the human mitochondrial genome
    • Nierlich D.P. Fragmentary 5S rRNA gene in the human mitochondrial genome. Mol Cell Biol 2 (1982) 207-209
    • (1982) Mol Cell Biol , vol.2 , pp. 207-209
    • Nierlich, D.P.1
  • 26
    • 0023646333 scopus 로고
    • Homology between bacterial DNA and bovine mitochondrial DNA encoding cytochrome c oxidase subunit III
    • Fink P.S., Whitford T., Leffak M., and Prochaska L.J. Homology between bacterial DNA and bovine mitochondrial DNA encoding cytochrome c oxidase subunit III. FEBS Lett 214 (1987) 75-80
    • (1987) FEBS Lett , vol.214 , pp. 75-80
    • Fink, P.S.1    Whitford, T.2    Leffak, M.3    Prochaska, L.J.4
  • 27
    • 0034889360 scopus 로고    scopus 로고
    • Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system
    • Aravind L., and Koonin E.V. Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system. Genome Res 11 (2001) 1365-1374
    • (2001) Genome Res , vol.11 , pp. 1365-1374
    • Aravind, L.1    Koonin, E.V.2
  • 29
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., De Waal E.C., and Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59 (1993) 695-700
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 31
    • 0032879764 scopus 로고    scopus 로고
    • Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities
    • Fisher M.M., and Triplett E.W. Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities. Appl Environ Microbiol 65 (1999) 4630-4636
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4630-4636
    • Fisher, M.M.1    Triplett, E.W.2
  • 32
    • 0026685320 scopus 로고
    • Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
    • Saiki R.K., Scharf S., Faloona F., Mullis K.B., Horn G.T., Erlich H.A., et al. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Biotechnology 24 (1992) 476-480
    • (1992) Biotechnology , vol.24 , pp. 476-480
    • Saiki, R.K.1    Scharf, S.2    Faloona, F.3    Mullis, K.B.4    Horn, G.T.5    Erlich, H.A.6
  • 33
    • 0035051375 scopus 로고    scopus 로고
    • An advanced molecular strategy to identify bacterial communities on art objects
    • Schabereiter-Gurtner C., Pinar G., Lubitz W., and Rolleke S. An advanced molecular strategy to identify bacterial communities on art objects. J Microbiol Methods 45 (2001) 77-87
    • (2001) J Microbiol Methods , vol.45 , pp. 77-87
    • Schabereiter-Gurtner, C.1    Pinar, G.2    Lubitz, W.3    Rolleke, S.4
  • 34
    • 0028186046 scopus 로고
    • Using the FASTA program to search protein and DNA sequence databases
    • Pearson W.R. Using the FASTA program to search protein and DNA sequence databases. Methods Mol Biol 24 (1994) 307-331
    • (1994) Methods Mol Biol , vol.24 , pp. 307-331
    • Pearson, W.R.1
  • 35
    • 0021328954 scopus 로고
    • Analysis of bacterial isolates from cerebrospinal fluid
    • Olson D.A., and Hoeprich P.D. Analysis of bacterial isolates from cerebrospinal fluid. J Clin Microbiol 19 (1984) 144-146
    • (1984) J Clin Microbiol , vol.19 , pp. 144-146
    • Olson, D.A.1    Hoeprich, P.D.2
  • 38
    • 23744446231 scopus 로고    scopus 로고
    • Use of a suspension array for rapid identification of the varieties and genotypes of the Cryptococcus neoformans species complex
    • Diaz M.R., and Fell J.W. Use of a suspension array for rapid identification of the varieties and genotypes of the Cryptococcus neoformans species complex. J Clin Microbiol 43 (2005) 3662-3672
    • (2005) J Clin Microbiol , vol.43 , pp. 3662-3672
    • Diaz, M.R.1    Fell, J.W.2
  • 39
    • 1242322068 scopus 로고    scopus 로고
    • Inactivation of mycoplasma species in blood by INACTINE PEN110 process
    • Zavizion B., Purmal A., Chapman J., and Alford B. Inactivation of mycoplasma species in blood by INACTINE PEN110 process. Transfusion 44 (2004) 286-293
    • (2004) Transfusion , vol.44 , pp. 286-293
    • Zavizion, B.1    Purmal, A.2    Chapman, J.3    Alford, B.4
  • 40
    • 7944223376 scopus 로고    scopus 로고
    • Inactivation of Gram-negative and Gram-positive bacteria in red cell concentrates using INACTINE PEN110 chemistry
    • Zavizion B., Serebryanik D., Chapman J., Alford B., and Purmal A. Inactivation of Gram-negative and Gram-positive bacteria in red cell concentrates using INACTINE PEN110 chemistry. Vox Sang 87 (2004) 143-149
    • (2004) Vox Sang , vol.87 , pp. 143-149
    • Zavizion, B.1    Serebryanik, D.2    Chapman, J.3    Alford, B.4    Purmal, A.5


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