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Volumn 30, Issue 23, 2014, Pages 3402-3404

BioBloom tools: Fast, accurate and memory-efficient host species sequence screening using bloom filters

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANIMAL; COMPUTER PROGRAM; DNA SEQUENCE; HUMAN; MOUSE; PROCEDURES;

EID: 84925552713     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu558     Document Type: Article
Times cited : (89)

References (9)
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  • 2
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    • Castellarin, M.1
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    • Lightweight data indexing and compression in external memory
    • Ferragina, P. et al. (2012) Lightweight data indexing and compression in external memory. Algorithmica, 63, 707-730.
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    • Ferragina, P.1
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    • PathSeq: Software to identify or discover microbes by deep sequencing of human tissue
    • Kostic, A.D. et al. (2011) PathSeq: software to identify or discover microbes by deep sequencing of human tissue. Nat. Biotechnol., 29, 393-396.
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    • Kostic, A.D.1
  • 6
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    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. and Durbin, R. (2003) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
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    • Li, H.1    Durbin, R.2
  • 7
    • 77954187316 scopus 로고    scopus 로고
    • Classification of DNA sequences using bloom filters
    • Stranneheim, H. et al. (2010) Classification of DNA sequences using bloom filters. Bioinformatics, 26, 1595-1600.
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    • Stranneheim, H.1
  • 8
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    • The landscape of viral expression and host gene fusion and adaptation in human cancer
    • Tang, K.-W. et al. (2013) The landscape of viral expression and host gene fusion and adaptation in human cancer. Nat. Commun., 4, 2513.
    • (2013) Nat. Commun. , vol.4
    • Tang, K.-W.1
  • 9
    • 84896090972 scopus 로고    scopus 로고
    • RNA CoMPASS: A dual approach for pathogen and host transcriptome analysis of RNA-Seq datasets
    • Xu, G. et al. (2014) RNA CoMPASS: a dual approach for pathogen and host transcriptome analysis of RNA-Seq datasets. PLoS One, 9, e89445.
    • (2014) PLoS One , vol.9
    • Xu, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.