-
1
-
-
0037372003
-
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
-
Jaenisch, R., Bird, A., Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat. Genet. 33:Suppl (2003), 245–254.
-
(2003)
Nat. Genet.
, vol.33
, pp. 245-254
-
-
Jaenisch, R.1
Bird, A.2
-
2
-
-
0027378582
-
Role for DNA methylation in genomic imprinting
-
Li, E., Beard, C., Jaenisch, R., Role for DNA methylation in genomic imprinting. Nature 366 (1993), 362–365.
-
(1993)
Nature
, vol.366
, pp. 362-365
-
-
Li, E.1
Beard, C.2
Jaenisch, R.3
-
3
-
-
84874194072
-
DNA methylation: roles in mammalian development
-
Smith, Z., Meissner, A., DNA methylation: roles in mammalian development. Nat. Rev. Genet. 14 (2013), 204–220.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 204-220
-
-
Smith, Z.1
Meissner, A.2
-
4
-
-
84937973423
-
Chromatin methylation and cardiovascular aging
-
Illi, B., Ciarapica, R., Capogrossi, M., Chromatin methylation and cardiovascular aging. J. Mol. Cell. Cardiol. 83 (2015), 21–31.
-
(2015)
J. Mol. Cell. Cardiol.
, vol.83
, pp. 21-31
-
-
Illi, B.1
Ciarapica, R.2
Capogrossi, M.3
-
5
-
-
84886099830
-
Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer
-
Plass, C., Pfister, S., Lindroth, A., Bogatyrova, O., Claus, R., Lichter, P., Mutations in regulators of the epigenome and their connections to global chromatin patterns in cancer. Nat. Rev. Genet. 14 (2013), 765–780.
-
(2013)
Nat. Rev. Genet.
, vol.14
, pp. 765-780
-
-
Plass, C.1
Pfister, S.2
Lindroth, A.3
Bogatyrova, O.4
Claus, R.5
Lichter, P.6
-
6
-
-
78650175023
-
Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
-
Ko, M., Huang, Y., Jankowska, A., Pape, U., Tahiliani, M., Bandukwala, H., An, J., Lamperti, E., Koh, K., Ganetzky, R., Liu, X., Aravind, L., Agarwal, S., Maciejewski, J., Rao, A., Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2. Nature 468 (2010), 839–843.
-
(2010)
Nature
, vol.468
, pp. 839-843
-
-
Ko, M.1
Huang, Y.2
Jankowska, A.3
Pape, U.4
Tahiliani, M.5
Bandukwala, H.6
An, J.7
Lamperti, E.8
Koh, K.9
Ganetzky, R.10
Liu, X.11
Aravind, L.12
Agarwal, S.13
Maciejewski, J.14
Rao, A.15
-
7
-
-
0031792779
-
Identification and characterization of a family of mammalian methyl-CpG binding proteins
-
Hendrich, B., Bird, A., Identification and characterization of a family of mammalian methyl-CpG binding proteins. Mol. Cell. Biol. 18 (1998), 6538–6547.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 6538-6547
-
-
Hendrich, B.1
Bird, A.2
-
8
-
-
84875505675
-
A common mode of recognition for methylated CpG
-
Liu, Y., Zhang, X., Blumenthal, R., Cheng, X., A common mode of recognition for methylated CpG. Trends Biochem. Sci. 38 (2013), 177–183.
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 177-183
-
-
Liu, Y.1
Zhang, X.2
Blumenthal, R.3
Cheng, X.4
-
9
-
-
84876278080
-
Methylation-dependent and -independent genomic targeting principles of the MBD protein family
-
Baubec, T., Ivanek, R., Lienert, F., Schubeler, D., Methylation-dependent and -independent genomic targeting principles of the MBD protein family. Cell 153 (2013), 480–492.
-
(2013)
Cell
, vol.153
, pp. 480-492
-
-
Baubec, T.1
Ivanek, R.2
Lienert, F.3
Schubeler, D.4
-
10
-
-
68149157845
-
Rapid analysis of heterogeneously methylated DNA using digital methylation-sensitive high resolution melting: application to the CDKN2B (p15) gene
-
Candiloro, I., Mikeska, T., Hokland, P., Dobrovic, A., Rapid analysis of heterogeneously methylated DNA using digital methylation-sensitive high resolution melting: application to the CDKN2B (p15) gene. Epigenetics Chromatin, 1, 2008, 7.
-
(2008)
Epigenetics Chromatin
, vol.1
, pp. 7
-
-
Candiloro, I.1
Mikeska, T.2
Hokland, P.3
Dobrovic, A.4
-
11
-
-
42449142344
-
Sensitive melting analysis after real time- methylation specific PCR (SMART-MSP): high-throughput and probe-free quantitative DNA methylation detection
-
Kristensen, L., Mikeska, T., Krypuy, M., Dobrovic, A., Sensitive melting analysis after real time- methylation specific PCR (SMART-MSP): high-throughput and probe-free quantitative DNA methylation detection. Nucleic Acids Res., 36, 2008, e42.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kristensen, L.1
Mikeska, T.2
Krypuy, M.3
Dobrovic, A.4
-
12
-
-
65549117575
-
Quantitation of DNA methylation by melt curve analysis
-
Smith, E., Jones, M., Drew, P., Quantitation of DNA methylation by melt curve analysis. BMC Cancer, 9, 2009, 123.
-
(2009)
BMC Cancer
, vol.9
, pp. 123
-
-
Smith, E.1
Jones, M.2
Drew, P.3
-
13
-
-
84898538836
-
Single molecule mechanical manipulation for studying biological properties of proteins, DNA, and sugars
-
Scholl, Z., Li, Q., Marszalek, P., Single molecule mechanical manipulation for studying biological properties of proteins, DNA, and sugars. Wiley Interdiscip. Rev. Nanomed. Nanobiotechnol. 6 (2014), 211–229.
-
(2014)
Wiley Interdiscip. Rev. Nanomed. Nanobiotechnol.
, vol.6
, pp. 211-229
-
-
Scholl, Z.1
Li, Q.2
Marszalek, P.3
-
14
-
-
79151477886
-
Atomic force microscopy study of DNA conformation in the presence of drugs
-
Cassina, V., Seruggia, D., Beretta, G.L., Salerno, D., Brogioli, D., Manzini, S., Zunino, F., Mantegazza, F., Atomic force microscopy study of DNA conformation in the presence of drugs. Eur. Biophys. J. 40 (2011), 59–68.
-
(2011)
Eur. Biophys. J.
, vol.40
, pp. 59-68
-
-
Cassina, V.1
Seruggia, D.2
Beretta, G.L.3
Salerno, D.4
Brogioli, D.5
Manzini, S.6
Zunino, F.7
Mantegazza, F.8
-
15
-
-
78649258039
-
Stability of Abeta (1-42) peptide fibrils as consequence of environmental modifications
-
Gregori, M., Cassina, V., Brogioli, D., Salerno, D., Kimpe, L.D., Scheper, W., Masserini, M., Mantegazza, F., Stability of Abeta (1-42) peptide fibrils as consequence of environmental modifications. Eur. Biophys. J. 39 (2010), 1613–1623.
-
(2010)
Eur. Biophys. J.
, vol.39
, pp. 1613-1623
-
-
Gregori, M.1
Cassina, V.2
Brogioli, D.3
Salerno, D.4
Kimpe, L.D.5
Scheper, W.6
Masserini, M.7
Mantegazza, F.8
-
16
-
-
80052423145
-
Direct quantification of the attempt frequency determining the mechanical unfolding of Ubiquitin protein
-
Popa, I., Fernandez, J., Garcia-Manyes, S., Direct quantification of the attempt frequency determining the mechanical unfolding of Ubiquitin protein. J. Biol. Chem. 286 (2011), 31072–31079.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 31072-31079
-
-
Popa, I.1
Fernandez, J.2
Garcia-Manyes, S.3
-
17
-
-
84879401486
-
Force dependency of biochemical reactions measured by single-molecule force-clamp spectroscopy
-
Popa, I., Kosuri, P., Alegre-Cebollada, J., Garcia-Manyes, S., Fernandez, J., Force dependency of biochemical reactions measured by single-molecule force-clamp spectroscopy. Nat. Protoc. 8 (2013), 1261–1276.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 1261-1276
-
-
Popa, I.1
Kosuri, P.2
Alegre-Cebollada, J.3
Garcia-Manyes, S.4
Fernandez, J.5
-
18
-
-
79851474623
-
Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecules
-
Wanunu, M., Cohen-Karni, D., Johnson, R., Fields, L., Benner, J., Peterman, N., Zheng, Y., Klein, M., Drndic, M., Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecules. J. Am. Chem. Soc. 133 (2011), 486–492.
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 486-492
-
-
Wanunu, M.1
Cohen-Karni, D.2
Johnson, R.3
Fields, L.4
Benner, J.5
Peterman, N.6
Zheng, Y.7
Klein, M.8
Drndic, M.9
-
19
-
-
0035204816
-
DNA methylation-dependent chromatin fiber compaction in vivo and in vitro: requirement for linker histone
-
Karymov, M., Tomschik, M., Leuba, S., Caiafa, P., Zlatanova, J., DNA methylation-dependent chromatin fiber compaction in vivo and in vitro: requirement for linker histone. FASEB J. 15 (2001), 2631–2641.
-
(2001)
FASEB J.
, vol.15
, pp. 2631-2641
-
-
Karymov, M.1
Tomschik, M.2
Leuba, S.3
Caiafa, P.4
Zlatanova, J.5
-
20
-
-
84908679499
-
Hydroxymethylation of DNA influences nucleosomal conformation and stability in vitro
-
Mendonca, A., Chang, E., Liu, W., Yuan, C., Hydroxymethylation of DNA influences nucleosomal conformation and stability in vitro. BBA 1839 (2014), 1323–1329.
-
(2014)
BBA
, vol.1839
, pp. 1323-1329
-
-
Mendonca, A.1
Chang, E.2
Liu, W.3
Yuan, C.4
-
21
-
-
84871255668
-
Hydrophobicity of methylated DNA as a possible mechanism for gene silencing
-
Kaur, P., Plochberger, B., Costa, P., Cope, S., Vaiana, S., Lindsay, S., Hydrophobicity of methylated DNA as a possible mechanism for gene silencing. Phys. Biol., 9, 2012, 065001.
-
(2012)
Phys. Biol.
, vol.9
, pp. 065001
-
-
Kaur, P.1
Plochberger, B.2
Costa, P.3
Cope, S.4
Vaiana, S.5
Lindsay, S.6
-
22
-
-
78149363041
-
Nanomechanical recognition measurements of individual DNA molecules reveal epigenetic methylation patterns
-
Zhu, R., Howorka, S., Proll, J., Kienberger, F., Preiner, J., Hesse, J., Ebner, A., Pastushenko, V., Gruber, H., Hinterdorfer, P., Nanomechanical recognition measurements of individual DNA molecules reveal epigenetic methylation patterns. Nat. Nanotechnol. 5 (2010), 788–791.
-
(2010)
Nat. Nanotechnol.
, vol.5
, pp. 788-791
-
-
Zhu, R.1
Howorka, S.2
Proll, J.3
Kienberger, F.4
Preiner, J.5
Hesse, J.6
Ebner, A.7
Pastushenko, V.8
Gruber, H.9
Hinterdorfer, P.10
-
23
-
-
80455168293
-
Cytosine methylation alters DNA mechanical properties
-
Severin, P., Zou, X., Gaub, H., Schulten, K., Cytosine methylation alters DNA mechanical properties. Nucleic Acids Res. 39 (2011), 8740–8751.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8740-8751
-
-
Severin, P.1
Zou, X.2
Gaub, H.3
Schulten, K.4
-
24
-
-
76149143416
-
Regulation of DNA methylation using different tensions of double strands constructed in a defined DNA nanostructure
-
Endo, M., Katsuda, Y., Hidaka, K., Sugiyama, H., Regulation of DNA methylation using different tensions of double strands constructed in a defined DNA nanostructure. J. Am. Chem. Soc. 132 (2010), 1592–1597.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 1592-1597
-
-
Endo, M.1
Katsuda, Y.2
Hidaka, K.3
Sugiyama, H.4
-
25
-
-
22144455993
-
Single-molecule measurements of the persistence length of double-stranded RNA
-
Abels, J.A., Moreno-Herrero, F., van der Heijden, T., Dekker, C., Dekker, N.H., Single-molecule measurements of the persistence length of double-stranded RNA. Biophys. J. 88 (2005), 2737–2744.
-
(2005)
Biophys. J.
, vol.88
, pp. 2737-2744
-
-
Abels, J.A.1
Moreno-Herrero, F.2
van der Heijden, T.3
Dekker, C.4
Dekker, N.H.5
-
26
-
-
0033949035
-
Atomic force microscopy studies of intercalation-induced changes in plasmid DNA tertiary structure
-
Pope, L.H., Davies, M.C., Laughton, C.A., Roberts, C.J., Tendler, S.J.B., Williams, P.M., Atomic force microscopy studies of intercalation-induced changes in plasmid DNA tertiary structure. J. Microsc. 199 (2000), 68–78.
-
(2000)
J. Microsc.
, vol.199
, pp. 68-78
-
-
Pope, L.H.1
Davies, M.C.2
Laughton, C.A.3
Roberts, C.J.4
Tendler, S.J.B.5
Williams, P.M.6
-
27
-
-
0029861327
-
A novel assay for drug-DNA binding mode, affinity, and exclusion number: scanning force microscopy
-
Coury, J.E., McFaillsom, L., Williams, L.D., Bottomley, L.A., A novel assay for drug-DNA binding mode, affinity, and exclusion number: scanning force microscopy. Proc. Natl. Acad. Sci. U. S. A. 93 (1996), 12283–12286.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 12283-12286
-
-
Coury, J.E.1
McFaillsom, L.2
Williams, L.D.3
Bottomley, L.A.4
-
28
-
-
33745135817
-
Structural analysis of hyperperiodic DNA from Caenorhabditis elegans
-
Moreno-Herrero, F., Seidel, R., Johnson, S.M., Fire, A., Dekker, N.H., Structural analysis of hyperperiodic DNA from Caenorhabditis elegans. Nucleic Acids Res. 34 (2006), 3057–3066.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 3057-3066
-
-
Moreno-Herrero, F.1
Seidel, R.2
Johnson, S.M.3
Fire, A.4
Dekker, N.H.5
-
29
-
-
0026495432
-
Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads
-
Smith, S.B., Finzi, L., Bustamante, C., Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads. Science 258 (1992), 1122–1126.
-
(1992)
Science
, vol.258
, pp. 1122-1126
-
-
Smith, S.B.1
Finzi, L.2
Bustamante, C.3
-
30
-
-
84982060514
-
Rontgenuntersuchung geloster fadenmolekule
-
Kratky, O., Porod, G., Rontgenuntersuchung geloster fadenmolekule. Recl. Trav. Chim. Pays Bas 68 (1949), 1106–1122.
-
(1949)
Recl. Trav. Chim. Pays Bas
, vol.68
, pp. 1106-1122
-
-
Kratky, O.1
Porod, G.2
-
31
-
-
33845810345
-
High flexibility of DNA on short length scales probed by atomic force microscopy
-
Wiggins, P.A., van der Heijden, T., Moreno-Herrero, F., Spakowitz, A., Phillips, R., Widom, J., Dekker, C., Nelson, P.C., High flexibility of DNA on short length scales probed by atomic force microscopy. Nat. Nanotechnol. 1 (2006), 137–141.
-
(2006)
Nat. Nanotechnol.
, vol.1
, pp. 137-141
-
-
Wiggins, P.A.1
van der Heijden, T.2
Moreno-Herrero, F.3
Spakowitz, A.4
Phillips, R.5
Widom, J.6
Dekker, C.7
Nelson, P.C.8
-
32
-
-
0030596081
-
Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by satistical polymer chain analysis
-
Rivetti, C., Guthold, M., Bustamante, C., Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by satistical polymer chain analysis. J. Mol. Biol. 264 (1996), 919–932.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 919-932
-
-
Rivetti, C.1
Guthold, M.2
Bustamante, C.3
-
33
-
-
84896689509
-
Unmethylated and methylated cpg dinucleotides distinctively regulate the physical properties of DNA
-
Jimenez-Useche, I., Shim, D., Yu, J., Yuan, C., Unmethylated and methylated cpg dinucleotides distinctively regulate the physical properties of DNA. Biopolymers 101 (2014), 517–524.
-
(2014)
Biopolymers
, vol.101
, pp. 517-524
-
-
Jimenez-Useche, I.1
Shim, D.2
Yu, J.3
Yuan, C.4
-
34
-
-
21144439049
-
Variational theory for a single polyelectrolyte chain revisited
-
Manghi, M., Netz, R., Variational theory for a single polyelectrolyte chain revisited. Eur. Phys. J. E Soft Matter 14 (2004), 67–77.
-
(2004)
Eur. Phys. J. E Soft Matter
, vol.14
, pp. 67-77
-
-
Manghi, M.1
Netz, R.2
-
35
-
-
68549135359
-
Scale-dependent electrostatic stiffening in biopolymers
-
Gubarev, A., Carrillo, J., Dobrynin, A., Scale-dependent electrostatic stiffening in biopolymers. Macromolecules 42 (2009), 5851–5860.
-
(2009)
Macromolecules
, vol.42
, pp. 5851-5860
-
-
Gubarev, A.1
Carrillo, J.2
Dobrynin, A.3
-
36
-
-
84864532284
-
Double-exponential decay of orientational correlations in semiflexible polyelectrolytes
-
Bacova, P., Kosovan, P., Uhlik, F., Kuldova, J., Limpouchova, Z., Prochazka, K., Double-exponential decay of orientational correlations in semiflexible polyelectrolytes. Eur. Phys. J. E, 35, 2012, 53.
-
(2012)
Eur. Phys. J. E
, vol.35
, pp. 53
-
-
Bacova, P.1
Kosovan, P.2
Uhlik, F.3
Kuldova, J.4
Limpouchova, Z.5
Prochazka, K.6
-
37
-
-
84931291822
-
Dependence of DNA persistence length on ionic strength of solutions with monovalent and divalent salts: A joint theory-experiment study
-
Brunet, A., Tardin, C., Salome, L., Rousseau, P., Destainville, N., Manghi, M., Dependence of DNA persistence length on ionic strength of solutions with monovalent and divalent salts: A joint theory-experiment study. Macromolecules 48 (2015), 3641–3652.
-
(2015)
Macromolecules
, vol.48
, pp. 3641-3652
-
-
Brunet, A.1
Tardin, C.2
Salome, L.3
Rousseau, P.4
Destainville, N.5
Manghi, M.6
-
38
-
-
0036922909
-
Structural effects of cytosine methylation on DNA sugar pucker studied by FTIR
-
Banyay, M., Graslund, A., Structural effects of cytosine methylation on DNA sugar pucker studied by FTIR. J. Mol. Biol. 324 (2002), 667–676.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 667-676
-
-
Banyay, M.1
Graslund, A.2
-
39
-
-
84860437700
-
Impact of methylation on the physical properties of DNA
-
Perez, A., Castellazzi, C.L., Battistini, F., Collinet, K., Flores, O., Deniz, O., Ruiz, M.L., Torrents, D., Eritja, R., Soler-Lopez, M., Orozco, M., Impact of methylation on the physical properties of DNA. Biophys. J. 102 (2012), 2140–2148.
-
(2012)
Biophys. J.
, vol.102
, pp. 2140-2148
-
-
Perez, A.1
Castellazzi, C.L.2
Battistini, F.3
Collinet, K.4
Flores, O.5
Deniz, O.6
Ruiz, M.L.7
Torrents, D.8
Eritja, R.9
Soler-Lopez, M.10
Orozco, M.11
-
40
-
-
84956782862
-
Effects of non-CpG site methylation on DNA thermal stability: a fluorescence study
-
Nardo, L., Lamperti, M., Salerno, D., Cassina, V., Missana, N., Bondani, M., Tempestini, A., Mantegazza, F., Effects of non-CpG site methylation on DNA thermal stability: a fluorescence study. Nucleic Acids Res., 2015, 10.1093/nar/gkv884.
-
(2015)
Nucleic Acids Res.
-
-
Nardo, L.1
Lamperti, M.2
Salerno, D.3
Cassina, V.4
Missana, N.5
Bondani, M.6
Tempestini, A.7
Mantegazza, F.8
-
41
-
-
0035838814
-
Dissociation of surface functional groups and preferential adsorption of ions on self-assembled monolayers assessed by streaming potential and streaming current measurements
-
Schweiss, R., Welzel, P., Werner, C., Knoll, W., Dissociation of surface functional groups and preferential adsorption of ions on self-assembled monolayers assessed by streaming potential and streaming current measurements. Langmuir 17 (2001), 4304–4311.
-
(2001)
Langmuir
, vol.17
, pp. 4304-4311
-
-
Schweiss, R.1
Welzel, P.2
Werner, C.3
Knoll, W.4
-
42
-
-
33645296884
-
Inferring the effective thickness of polyelectrolytes from stretching measurements at various ionic strengths: applications to DNA and RNA
-
Toan, N., Micheletti, C., Inferring the effective thickness of polyelectrolytes from stretching measurements at various ionic strengths: applications to DNA and RNA. J. Phys. Condens. Matter, 18, 2006, S269.
-
(2006)
J. Phys. Condens. Matter
, vol.18
, pp. S269
-
-
Toan, N.1
Micheletti, C.2
-
43
-
-
77952413161
-
Reversed anionic Hofmeister series: The interplay of surface charge and surface polarity
-
Schwierz, N., Horinek, D., Netz, R.R., Reversed anionic Hofmeister series: The interplay of surface charge and surface polarity. Langmuir 26 (2010), 7370–7379.
-
(2010)
Langmuir
, vol.26
, pp. 7370-7379
-
-
Schwierz, N.1
Horinek, D.2
Netz, R.R.3
|