-
1
-
-
0032732788
-
Relationships between chromatin organization and DNA methylation in determining gene expression
-
10.1006/scbi.1999.0134 1044-579X
-
Jones P L and Wolffe A P 1999 Relationships between chromatin organization and DNA methylation in determining gene expression Semin. Cancer Biol. 9 339-47
-
(1999)
Semin. Cancer Biol.
, vol.9
, Issue.5
, pp. 339-347
-
-
Jones, P.L.1
Wolffe, A.P.2
-
2
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
10.1101/gad.947102 0890-9369
-
Bird A 2002 DNA methylation patterns and epigenetic memory Genes Dev. 16 6-21
-
(2002)
Genes Dev.
, vol.16
, Issue.1
, pp. 6-21
-
-
Bird, A.1
-
3
-
-
0033231394
-
Genomic imprinting in mammals-an interplay between chromatin and DNA methylation?
-
10.1016/S0168-9525(99)01822-3 0168-9525
-
Feil R and Khosla S 1999 Genomic imprinting in mammals-an interplay between chromatin and DNA methylation? Trends Genet. 15 431-5
-
(1999)
Trends Genet.
, vol.15
, Issue.11
, pp. 431-435
-
-
Feil, R.1
Khosla, S.2
-
4
-
-
33947315736
-
Cancer epigenomics: DNA methylomes and histone-modification maps
-
10.1038/nrg2005 1471-0056
-
Esteller M 2007 Cancer epigenomics: DNA methylomes and histone-modification maps Nat. Rev. Genet. 8 286-98
-
(2007)
Nat. Rev. Genet.
, vol.8
, Issue.4
, pp. 286-298
-
-
Esteller, M.1
-
5
-
-
0032739329
-
CpG island methylator phenotypes in aging and cancer
-
10.1006/scbi.1999.0135 1044-579X
-
Toyota M and Issa J P Jr 1999 CpG island methylator phenotypes in aging and cancer Semin. Cancer Biol. 9 349-57
-
(1999)
Semin. Cancer Biol.
, vol.9
, Issue.5
, pp. 349-357
-
-
Toyota, M.1
Issa, J.P.2
-
6
-
-
0031837109
-
Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription
-
10.1038/561 1061-4036
-
Jones P L, Veenstra G C J, Wade P A, Vermaak D, Kass S U, Landsberger N, Strouboulis J and Wolffe A P 1998 Methylated DNA and MeCP2 recruit histone deacetylase to repress transcription Nature Genet. 19 187-91
-
(1998)
Nature Genet.
, vol.19
, Issue.2
, pp. 187-191
-
-
Jones, P.L.1
Veenstra, G.C.J.2
Wade, P.A.3
Vermaak, D.4
Kass, S.U.5
Landsberger, N.6
Strouboulis, J.7
Wolffe, A.P.8
-
7
-
-
0035204816
-
DNA methylation-dependent chromatin fiber compaction in vivo and in vitro: Requirement for linker histone
-
10.1096/fj.01-0345com 1530-6860
-
Karymov M A, Tomschik M, Leuba S H, Caiafa P and Zlatanova J 2001 DNA methylation-dependent chromatin fiber compaction in vivo and in vitro: requirement for linker histone FASEB J. 15 2631-41
-
(2001)
FASEB J.
, vol.15
, Issue.14
, pp. 2631-2641
-
-
Karymov, M.A.1
Tomschik, M.2
Leuba, S.H.3
Caiafa, P.4
Zlatanova, J.5
-
8
-
-
77249178763
-
DNA methylation increases nucleosome compaction and rigidity
-
10.1021/ja910264z 0002-7863
-
Choy J S, Wei S, Lee J Y, Tan S, Chu S and Lee T-H 2010 DNA methylation increases nucleosome compaction and rigidity J. Am. Chem. Soc. 132 1782-3
-
(2010)
J. Am. Chem. Soc.
, vol.132
, Issue.6
, pp. 1782-1783
-
-
Choy, J.S.1
Wei, S.2
Lee, J.Y.3
Tan, S.4
Chu, S.5
Lee, T.-H.6
-
9
-
-
0028840147
-
Investigation of the influence of cytosine methylation on DNA flexibility
-
10.1074/jbc.270.1.197 0021-9258
-
Hodges-Garcia Y and Hagerman P J 1995 Investigation of the influence of cytosine methylation on DNA flexibility J. Biol. Chem. 270 197-201
-
(1995)
J. Biol. Chem.
, vol.270
, Issue.1
, pp. 197-201
-
-
Hodges-Garcia, Y.1
Hagerman, P.J.2
-
10
-
-
0036306349
-
Bending and flexibility of methylated and unmethylated EcoRI DNA
-
10.1006/jmbi.2001.5247 0022-2836
-
Nathan D and Crothers D M 2002 Bending and flexibility of methylated and unmethylated EcoRI DNA J. Mol. Biol. 316 7-17
-
(2002)
J. Mol. Biol.
, vol.316
, Issue.1
, pp. 7-17
-
-
Nathan, D.1
Crothers, D.M.2
-
11
-
-
0026808756
-
Cytosine methylation can induce local distortions in the structure of duplex DNA
-
10.1021/bi00148a022 0006-2960
-
Hodges-Garcia Y and Hagerman P J 1992 Cytosine methylation can induce local distortions in the structure of duplex DNA Biochemistry 31 7595-9
-
(1992)
Biochemistry
, vol.31
, Issue.33
, pp. 7595-7599
-
-
Hodges-Garcia, Y.1
Hagerman, P.J.2
-
12
-
-
0036922909
-
Structural effects of cytosine methylation on DNA sugar pucker studied by FTIR
-
10.1016/S0022-2836(02)01104-X 0022-2836
-
Banyay M and Gräslund A 2002 Structural effects of cytosine methylation on DNA sugar pucker studied by FTIR J. Mol. Biol. 324 667-76
-
(2002)
J. Mol. Biol.
, vol.324
, Issue.4
, pp. 667-676
-
-
Banyay, M.1
Gräslund, A.2
-
13
-
-
80455168293
-
Cytosine methylation alters DNA mechanical properties
-
10.1093/nar/gkr578 0305-1048
-
Severin P M D, Zou X, Gaub H E and Schulten K 2011 Cytosine methylation alters DNA mechanical properties Nucleic Acids Res. 39 8740-51
-
(2011)
Nucleic Acids Res.
, vol.39
, Issue.20
, pp. 8740-8751
-
-
Severin, P.M.D.1
Zou, X.2
Gaub, H.E.3
Schulten, K.4
-
14
-
-
84860437700
-
Impact of methylation on the physical properties of DNA
-
10.1016/j.bpj.2012.03.056 0006-3495
-
Perez A 2012 Impact of methylation on the physical properties of DNA Biophys. J. 102 2140-8
-
(2012)
Biophys. J.
, vol.102
, Issue.9
, pp. 2140-2148
-
-
Perez, A.1
-
15
-
-
79851474623
-
Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecules
-
10.1021/ja107836t 0002-7863
-
Wanunu M, Cohen-Karni D, Johnson R R, Fields L, Benner J, Peterman N, Zheng Y, Klein M L and Drndic M 2011 Discrimination of methylcytosine from hydroxymethylcytosine in DNA molecules J. Am. Chem. Soc. 133 486-92
-
(2011)
J. Am. Chem. Soc.
, vol.133
, Issue.3
, pp. 486-492
-
-
Wanunu, M.1
Cohen-Karni, D.2
Johnson, R.R.3
Fields, L.4
Benner, J.5
Peterman, N.6
Zheng, Y.7
Klein, M.L.8
Drndic, M.9
-
16
-
-
0026523796
-
Mechanism of human methyl-directed DNA methyltransferase and the fidelity of cytosine methylation
-
10.1073/pnas.89.10.4744 0027-8424
-
Smith S, Kaplan B, Sowers L and Newman E 1992 Mechanism of human methyl-directed DNA methyltransferase and the fidelity of cytosine methylation Proc. Natl Acad. Sci. USA 89 4744-8
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, Issue.10
, pp. 4744-4748
-
-
Smith, S.1
Kaplan, B.2
Sowers, L.3
Newman, E.4
-
17
-
-
0035930512
-
Population analysis of subsaturated 172-12 nucleosomal arrays by atomic force microscopy detects nonrandom behavior that is favored by histone acetylation and short repeat length
-
Bash R, Yodh J, Lyubchenko Y, Woodbury N and Lohr D 2001 Population analysis of subsaturated 172-12 nucleosomal arrays by atomic force microscopy detects nonrandom behavior that is favored by histone acetylation and short repeat length J. Biol. Chem. 276 48362-70
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 48362-48370
-
-
Bash, R.1
Yodh, J.2
Lyubchenko, Y.3
Woodbury, N.4
Lohr, D.5
-
18
-
-
0020491423
-
The hydrophobic interaction is long range, decaying exponentially with distance
-
10.1038/300341a0 0028-0836
-
Israelachvili J and Pashley R 1982 The hydrophobic interaction is long range, decaying exponentially with distance Nature 300 341-2
-
(1982)
Nature
, vol.300
, Issue.5890
, pp. 341-342
-
-
Israelachvili, J.1
Pashley, R.2
-
19
-
-
0030596081
-
Scanning force microscopy of DNA deposited onto mica: Equilibrium versus kinetic trapping studied by statistical polymer chain analysis
-
10.1006/jmbi.1996.0687 0022-2836
-
Rivetti C, Guthold M and Bustamnte C 1996 Scanning force microscopy of DNA deposited onto mica: equilibrium versus kinetic trapping studied by statistical polymer chain analysis J. Mol. Biol. 264 919-32
-
(1996)
J. Mol. Biol.
, vol.264
, Issue.5
, pp. 919-932
-
-
Rivetti, C.1
Guthold, M.2
Bustamnte, C.3
-
20
-
-
33644791019
-
Generalized theory of semiflexible polymers
-
10.1103/PhysRevE.73.031906 1539-3755
-
Wiggins P and Nelson P 2006 Generalized theory of semiflexible polymers Phys. Rev. E 73 031906
-
(2006)
Phys. Rev. E
, vol.73
, Issue.3
, pp. 031906
-
-
Wiggins, P.1
Nelson, P.2
-
21
-
-
84859817450
-
The role of methylation in the intrinsic dynamics of B- and Z-DNA
-
10.1371/journal.pone.0035558 1932-6203
-
Temiz N, Donohue D, Bacolla A, Luke B and Collins J 2012 The role of methylation in the intrinsic dynamics of B- and Z-DNA PLoS One 7 e35558
-
(2012)
PLoS One
, vol.7
, Issue.4
-
-
Temiz, N.1
Donohue, D.2
Bacolla, A.3
Luke, B.4
Collins, J.5
-
22
-
-
0024119988
-
B-A and B-Z transitions in deoxyoligoduplexes containing 4- and 5-methylcytosine
-
Shchelkina A K, Minchenkova L E, Ivanov V I, Butkus V V and Ianulaǐtis A A 1988 B-A and B-Z transitions in deoxyoligoduplexes containing 4- and 5-methylcytosine Mol. Biol. 22 1562-70
-
(1988)
Mol. Biol.
, vol.22
, pp. 1562-1570
-
-
Shchelkina, A.K.1
Minchenkova, L.E.2
Ivanov, V.I.3
Butkus, V.V.4
Ianulaǐtis, A.A.5
-
23
-
-
0024023641
-
The origin of the A to B transition in DNA fibers and films
-
10.1002/bip.360270610 0006-3525
-
Lindsay S M, Lee S A, Powell J, Weidlich T, DeMarco C, Lewen G D, Tao N J and Rupprecht A 1988 The origin of the A to B transition in DNA fibers and films Biopolymers 27 1015-43
-
(1988)
Biopolymers
, vol.27
, Issue.6
, pp. 1015-1043
-
-
Lindsay, S.M.1
Lee, S.A.2
Powell, J.3
Weidlich, T.4
Demarco, C.5
Lewen, G.D.6
Tao, N.J.7
Rupprecht, A.8
-
25
-
-
0025243921
-
A dynamic light scattering study of four DNA restriction fragments
-
10.1021/ma00204a022 0024-9297
-
Sorlie S S and Pecora R 1990 A dynamic light scattering study of four DNA restriction fragments Macromolecules 23 487-97
-
(1990)
Macromolecules
, vol.23
, Issue.2
, pp. 487-497
-
-
Sorlie, S.S.1
Pecora, R.2
-
26
-
-
0019544304
-
Effects of methylation on a synthetic polynucleotide: The B-Z transition in poly(dG.m5dC).poly(dG.m5dC)
-
10.1073/pnas.78.3.1619 0027-8424
-
Behe M and Felsenfeld G 1981 Effects of methylation on a synthetic polynucleotide: The B-Z transition in poly(dG.m5dC).poly(dG.m5dC) Proc. Natl Acad. Sci. USA 78 1619-23
-
(1981)
Proc. Natl Acad. Sci. USA
, vol.78
, Issue.3
, pp. 1619-1623
-
-
Behe, M.1
Felsenfeld, G.2
-
27
-
-
0032079703
-
Hydration and recognition of methylated CpG steps in DNA
-
10.1093/emboj/17.9.2709 1460-2075
-
Mayer-Jung C, Moras D and Timsit Y 1998 Hydration and recognition of methylated CpG steps in DNA EMBO J. 17 2709-18
-
(1998)
EMBO J.
, vol.17
, Issue.9
, pp. 2709-2718
-
-
Mayer-Jung, C.1
Moras, D.2
Timsit, Y.3
-
28
-
-
39549090166
-
MeCP2 binding to DNA depends upon hydration at methyl-CpG
-
10.1016/j.molcel.2007.12.028 1097-2765
-
Ho K L, McNae I W, Schmiedeberg L, Klose R J, Bird A P and Walkinshaw M D 2008 MeCP2 binding to DNA depends upon hydration at methyl-CpG Mol. Cell 29 525-31
-
(2008)
Mol. Cell
, vol.29
, Issue.4
, pp. 525-531
-
-
Ho, K.L.1
McNae, I.W.2
Schmiedeberg, L.3
Klose, R.J.4
Bird, A.P.5
Walkinshaw, M.D.6
-
29
-
-
26944481188
-
Interfaces and the driving force of hydrophobic assembly
-
10.1038/nature04162 0028-0836
-
Chandler D 2005 Interfaces and the driving force of hydrophobic assembly Nature 437 640-7
-
(2005)
Nature
, vol.437
, Issue.7059
, pp. 640-647
-
-
Chandler, D.1
|