-
1
-
-
0019128183
-
Role of anaerobic bacteria in the metabolic welfare of the colonic mucosa in man
-
Roediger, W. E. Role of anaerobic bacteria in the metabolic welfare of the colonic mucosa in man. Gut 21, 793-798 (1980).
-
(1980)
Gut
, vol.21
, pp. 793-798
-
-
Roediger, W.E.1
-
2
-
-
84890564250
-
Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
-
Furusawa, Y. et al. Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells. Nature 504, 446-450 (2013).
-
(2013)
Nature
, vol.504
, pp. 446-450
-
-
Furusawa, Y.1
-
3
-
-
84890550163
-
Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
-
Arpaia, N. et al. Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature 504, 451-455 (2013).
-
(2013)
Nature
, vol.504
, pp. 451-455
-
-
Arpaia, N.1
-
4
-
-
85043492396
-
Butyrate histone deacetylase inhibitors
-
Steliou, K., Boosalis, M. S., Perrine, S. P., Sangerman, J. & Faller, D. V. Butyrate histone deacetylase inhibitors. Biores Open Access 1, 192-198 (2012).
-
(2012)
Biores Open Access
, vol.1
, pp. 192-198
-
-
Steliou, K.1
Boosalis, M.S.2
Perrine, S.P.3
Sangerman, J.4
Faller, D.V.5
-
5
-
-
0026691619
-
Effect of butyrate enemas on the colonic mucosa in distal ulcerative colitis
-
Scheppach, W. et al. Effect of butyrate enemas on the colonic mucosa in distal ulcerative colitis. Gastroenterology 103, 51-56 (1992).
-
(1992)
Gastroenterology
, vol.103
, pp. 51-56
-
-
Scheppach, W.1
-
6
-
-
0037126667
-
The microbiology of butyrate formation in the human colon
-
Pryde, S. E., Duncan, S. H., Hold, G. L., Stewart, C. S. & Flint, H. J. The microbiology of butyrate formation in the human colon. FEMS microbiology letters 217, 133-139 (2002).
-
(2002)
FEMS Microbiology Letters
, vol.217
, pp. 133-139
-
-
Pryde, S.E.1
Duncan, S.H.2
Hold, G.L.3
Stewart, C.S.4
Flint, H.J.5
-
7
-
-
78649686679
-
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
-
e1841
-
Willing, B. P. et al. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology 139, 1844-1854.e1841 (2010).
-
(2010)
Gastroenterology
, vol.139
, pp. 1844-1854
-
-
Willing, B.P.1
-
8
-
-
84938770891
-
Reduction of butyrate- and methane-producing microorganisms in patients with Irritable Bowel Syndrome
-
Pozuelo, M. et al. Reduction of butyrate- and methane-producing microorganisms in patients with Irritable Bowel Syndrome. Sci Rep 5, 12693 (2015).
-
(2015)
Sci Rep
, vol.5
, pp. 12693
-
-
Pozuelo, M.1
-
9
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
Qin, J. et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60 (2012).
-
(2012)
Nature
, vol.490
, pp. 55-60
-
-
Qin, J.1
-
10
-
-
84855923925
-
Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
-
Wang, T. et al. Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. Isme j 6, 320-329 (2012).
-
(2012)
Isme J
, vol.6
, pp. 320-329
-
-
Wang, T.1
-
12
-
-
76049120713
-
Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease
-
Van Immerseel, F. et al. Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease. J Med Microbiol 59, 141-143 (2010).
-
(2010)
J Med Microbiol
, vol.59
, pp. 141-143
-
-
Van Immerseel, F.1
-
13
-
-
84887423043
-
Butyrate-producing bacteria as pharmabiotics for inflammatory bowel disease
-
Marteau, P. Butyrate-producing bacteria as pharmabiotics for inflammatory bowel disease. Gut 62, 1673 (2013).
-
(2013)
Gut
, vol.62
, pp. 1673
-
-
Marteau, P.1
-
15
-
-
79959271087
-
Intestinal homeostasis and its breakdown in inflammatory bowel disease
-
Maloy, K. J. & Powrie, F. Intestinal homeostasis and its breakdown in inflammatory bowel disease. Nature 474, 298-306 (2011).
-
(2011)
Nature
, vol.474
, pp. 298-306
-
-
Maloy, K.J.1
Powrie, F.2
-
16
-
-
84867208167
-
The gut microbiota in IBD
-
Manichanh, C., Borruel, N., Casellas, F. & Guarner, F. The gut microbiota in IBD. Nat Rev Gastroenterol Hepatol 9, 599-608 (2012).
-
(2012)
Nat Rev Gastroenterol Hepatol
, vol.9
, pp. 599-608
-
-
Manichanh, C.1
Borruel, N.2
Casellas, F.3
Guarner, F.4
-
17
-
-
70349488325
-
Low counts of Faecalibacterium prausnitzii in colitis microbiota
-
Sokol, H. et al. Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm Bowel Dis 15, 1183-1189 (2009).
-
(2009)
Inflamm Bowel Dis
, vol.15
, pp. 1183-1189
-
-
Sokol, H.1
-
18
-
-
84904048875
-
A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis
-
Machiels, K. et al. A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis. Gut 63, 1275-1283 (2014).
-
(2014)
Gut
, vol.63
, pp. 1275-1283
-
-
Machiels, K.1
-
19
-
-
78649622569
-
Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray
-
Kang, S. et al. Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray. Inflamm Bowel Dis 16, 2034-2042 (2010).
-
(2010)
Inflamm Bowel Dis
, vol.16
, pp. 2034-2042
-
-
Kang, S.1
-
20
-
-
55949124035
-
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
-
Sokol, H. et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA 105, 16731-16736 (2008).
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 16731-16736
-
-
Sokol, H.1
-
21
-
-
84891743578
-
Progress towards butyrate-producing pharmabiotics: Butyricicoccus pullicaecorum capsule and efficacy in TNBS models in comparison with therapeutics
-
Eeckhaut, V., Ducatelle, R., Sas, B., Vermeire, S. & Van Immerseel, F. Progress towards butyrate-producing pharmabiotics: Butyricicoccus pullicaecorum capsule and efficacy in TNBS models in comparison with therapeutics. Gut 63, 367 (2014).
-
(2014)
Gut
, vol.63
, pp. 367
-
-
Eeckhaut, V.1
Ducatelle, R.2
Sas, B.3
Vermeire, S.4
Van Immerseel, F.5
-
22
-
-
0034091384
-
Preventive efficacy of butyrate enemas and oral administration of Clostridium butyricum M588 in dextran sodium sulfate-induced colitis in rats
-
Okamoto, T. et al. Preventive efficacy of butyrate enemas and oral administration of Clostridium butyricum M588 in dextran sodium sulfate-induced colitis in rats. J Gastroenterol 35, 341-346 (2000).
-
(2000)
J Gastroenterol
, vol.35
, pp. 341-346
-
-
Okamoto, T.1
-
23
-
-
33645096810
-
Eubacterium limosum ameliorates experimental colitis and metabolite of microbe attenuates colonic inflammatory action with increase of mucosal integrity
-
Kanauchi, O. et al. Eubacterium limosum ameliorates experimental colitis and metabolite of microbe attenuates colonic inflammatory action with increase of mucosal integrity. World J Gastroenterol 12, 1071-1077 (2006).
-
(2006)
World J Gastroenterol
, vol.12
, pp. 1071-1077
-
-
Kanauchi, O.1
-
24
-
-
0037126667
-
The microbiology of butyrate formation in the human colon
-
Pryde, S. E., Duncan, S. H., Hold, G. L., Stewart, C. S. & Flint, H. J. The microbiology of butyrate formation in the human colon. FEMS Microbiol Lett 217, 133-139 (2002).
-
(2002)
FEMS Microbiol Lett
, vol.217
, pp. 133-139
-
-
Pryde, S.E.1
Duncan, S.H.2
Hold, G.L.3
Stewart, C.S.4
Flint, H.J.5
-
25
-
-
77649119543
-
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene
-
Louis, P., Young, P., Holtrop, G. & Flint, H. J. Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environ Microbiol 12, 304-314 (2010).
-
(2010)
Environ Microbiol
, vol.12
, pp. 304-314
-
-
Louis, P.1
Young, P.2
Holtrop, G.3
Flint, H.J.4
-
26
-
-
84899787502
-
Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data
-
Vital, M., Howe, A. C. & Tiedje, J. M. Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data. MBio 5, e00889 (2014).
-
(2014)
MBio
, vol.5
, pp. e00889
-
-
Vital, M.1
Howe, A.C.2
Tiedje, J.M.3
-
27
-
-
0036793753
-
Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine
-
Duncan, S. H., Barcenilla, A., Stewart, C. S., Pryde, S. E. & Flint, H. J. Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine. Appl Environ Microbiol 68, 5186-5190 (2002).
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5186-5190
-
-
Duncan, S.H.1
Barcenilla, A.2
Stewart, C.S.3
Pryde, S.E.4
Flint, H.J.5
-
28
-
-
84867337248
-
Anaerostipes hadrus comb. Nov., a dominant species within the human colonic microbiota; Reclassification of Eubacterium hadrum Moore et al. 1976
-
Allen-Vercoe, E. et al. Anaerostipes hadrus comb. nov., a dominant species within the human colonic microbiota; reclassification of Eubacterium hadrum Moore et al. 1976. Anaerobe 18, 523-529 (2012).
-
(2012)
Anaerobe
, vol.18
, pp. 523-529
-
-
Allen-Vercoe, E.1
-
29
-
-
84861904854
-
VFDB 2012 update: Toward the genetic diversity and molecular evolution of bacterial virulence factors
-
Chen, L., Xiong, Z., Sun, L., Yang, J. & Jin, Q. VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res 40, D641-645 (2012).
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D641-645
-
-
Chen, L.1
Xiong, Z.2
Sun, L.3
Yang, J.4
Jin, Q.5
-
30
-
-
0030794060
-
Inflammatory bowel disease: An immunity-mediated condition triggered by bacterial infection with Helicobacter hepaticus
-
Cahill, R. J. et al. Inflammatory bowel disease: an immunity-mediated condition triggered by bacterial infection with Helicobacter hepaticus. Infect Immun 65, 3126-3131 (1997).
-
(1997)
Infect Immun
, vol.65
, pp. 3126-3131
-
-
Cahill, R.J.1
-
31
-
-
0035757522
-
The role of microflora in the development of intestinal inflammation: Acute and chronic colitis induced by dextran sulfate in germ-free and conventionally reared immunocompetent and immunodeficient mice
-
Hudcovic, T., Stepankova, R., Cebra, J. & Tlaskalova-Hogenova, H. The role of microflora in the development of intestinal inflammation: acute and chronic colitis induced by dextran sulfate in germ-free and conventionally reared immunocompetent and immunodeficient mice. Folia Microbiol (Praha) 46, 565-572 (2001).
-
(2001)
Folia Microbiol (Praha)
, vol.46
, pp. 565-572
-
-
Hudcovic, T.1
Stepankova, R.2
Cebra, J.3
Tlaskalova-Hogenova, H.4
-
32
-
-
38649129512
-
Shift towards pro-inflammatory intestinal bacteria aggravates acute murine colitis via Toll-like receptors 2 and 4
-
Heimesaat, M. M. et al. Shift towards pro-inflammatory intestinal bacteria aggravates acute murine colitis via Toll-like receptors 2 and 4. PLoS One 2, e662 (2007).
-
(2007)
PLoS One
, vol.2
, pp. e662
-
-
Heimesaat, M.M.1
-
33
-
-
84899484295
-
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
-
Schwab, C. & Berry, D. Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery. Isme j 8, 1101-1114 (2014).
-
(2014)
Isme J
, vol.8
, pp. 1101-1114
-
-
Schwab, C.1
Berry, D.2
-
34
-
-
84867744191
-
Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
-
Berry, D. et al. Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. Isme j 6, 2091-2106 (2012).
-
(2012)
Isme J
, vol.6
, pp. 2091-2106
-
-
Berry, D.1
-
35
-
-
84861992014
-
The application of ecological theory toward an understanding of the human microbiome
-
Costello, E. K., Stagaman, K., Dethlefsen, L., Bohannan, B. J. & Relman, D. A. The application of ecological theory toward an understanding of the human microbiome. Science 336, 1255-1262 (2012).
-
(2012)
Science
, vol.336
, pp. 1255-1262
-
-
Costello, E.K.1
Stagaman, K.2
Dethlefsen, L.3
Bohannan, B.J.4
Relman, D.A.5
-
36
-
-
84878465280
-
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
-
Everard, A. et al. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc Natl Acad Sci USA 110, 9066-9071 (2013).
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 9066-9071
-
-
Everard, A.1
-
37
-
-
40549106737
-
The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract
-
Derrien, M., Collado, M. C., Ben-Amor, K., Salminen, S. & de Vos, W. M. The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract. Appl Environ Microbiol 74, 1646-1648 (2008).
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 1646-1648
-
-
Derrien, M.1
Collado, M.C.2
Ben-Amor, K.3
Salminen, S.4
De Vos, W.M.5
-
38
-
-
83655210633
-
Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader akkermansia muciniphila
-
Derrien, M. et al. Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila. Front Microbiol 2, 166 (2011).
-
(2011)
Front Microbiol
, vol.2
, pp. 166
-
-
Derrien, M.1
-
39
-
-
84897960120
-
An increase in the Akkermansia spp. Population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice
-
Shin, N. R. et al. An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice. Gut 63, 727-735 (2014).
-
(2014)
Gut
, vol.63
, pp. 727-735
-
-
Shin, N.R.1
-
40
-
-
84902262539
-
Immunological alteration and changes of gut microbiota after dextran sulfate sodium (DSS) administration in mice
-
Hakansson, A. et al. Immunological alteration and changes of gut microbiota after dextran sulfate sodium (DSS) administration in mice. Clinical and experimental medicine 15, 107-120 (2015).
-
(2015)
Clinical and Experimental Medicine
, vol.15
, pp. 107-120
-
-
Hakansson, A.1
-
41
-
-
84868101602
-
Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice
-
Reikvam, D. H. et al. Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice. European journal of immunology 42, 2959-2970 (2012).
-
(2012)
European Journal of Immunology
, vol.42
, pp. 2959-2970
-
-
Reikvam, D.H.1
-
42
-
-
84881148921
-
Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults
-
Weir, T. L. et al. Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults. PLoS One 8, e70803 (2013).
-
(2013)
PLoS One
, vol.8
, pp. e70803
-
-
Weir, T.L.1
-
44
-
-
84883813272
-
Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice
-
Ganesh, B. P., Klopfleisch, R., Loh, G. & Blaut, M. Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice. PLoS One 8, e74963 (2013).
-
(2013)
PLoS One
, vol.8
, pp. e74963
-
-
Ganesh, B.P.1
Klopfleisch, R.2
Loh, G.3
Blaut, M.4
-
45
-
-
0029823208
-
The role of the Lps gene in experimental ulcerative colitis in mice
-
Lange, S., Delbro, D. S., Jennische, E. & Mattsby-Baltzer, I. The role of the Lps gene in experimental ulcerative colitis in mice. Apmis 104, 823-833 (1996).
-
(1996)
Apmis
, vol.104
, pp. 823-833
-
-
Lange, S.1
Delbro, D.S.2
Jennische, E.3
Mattsby-Baltzer, I.4
-
46
-
-
69449092649
-
Parasutterella excrementihominis gen. Nov., sp. Nov., a member of the family Alcaligenaceae isolated from human faeces
-
Nagai, F., Morotomi, M., Sakon, H. & Tanaka, R. Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces. Int J Syst Evol Microbiol 59, 1793-1797 (2009).
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 1793-1797
-
-
Nagai, F.1
Morotomi, M.2
Sakon, H.3
Tanaka, R.4
-
47
-
-
84973293219
-
P-237 multiple double-barcoding 16S sequencing on the MiSeq platform to study the gut microbiome in Ashkenazi Jews with Crohn's disease
-
Hu, J., Franzen, O., Pei, Z., Itzkowitz, S. & Peter, I. P-237 Multiple Double-barcoding 16S Sequencing on the MiSeq Platform to Study the Gut Microbiome in Ashkenazi Jews with Crohn's Disease. Inflammatory Bowel Diseases 19, S119-S121 (2013).
-
(2013)
Inflammatory Bowel Diseases
, vol.19
, pp. S119-S121
-
-
Hu, J.1
Franzen, O.2
Pei, Z.3
Itzkowitz, S.4
Peter, I.5
-
48
-
-
33745628389
-
Probiotic use in clinical practice: What are the risks?
-
Boyle, R. J., Robins-Browne, R. M. & Tang, M. L. Probiotic use in clinical practice: what are the risks? The American journal of clinical nutrition 83, 1256-1264 (2006).
-
(2006)
The American Journal of Clinical Nutrition
, vol.83
, pp. 1256-1264
-
-
Boyle, R.J.1
Robins-Browne, R.M.2
Tang, M.L.3
-
49
-
-
0034890663
-
Lactobacillus casei subsp. Rhamnosus sepsis in a patient with ulcerative colitis
-
Farina, C., Arosio, M., Mangia, M. & Moioli, F. Lactobacillus casei subsp. rhamnosus sepsis in a patient with ulcerative colitis. J Clin Gastroenterol 33, 251-252 (2001).
-
(2001)
J Clin Gastroenterol
, vol.33
, pp. 251-252
-
-
Farina, C.1
Arosio, M.2
Mangia, M.3
Moioli, F.4
-
50
-
-
8644289660
-
Two cases of Lactobacillus bacteremia during probiotic treatment of short gut syndrome
-
Kunz, A. N., Noel, J. M. & Fairchok, M. P. Two cases of Lactobacillus bacteremia during probiotic treatment of short gut syndrome. J Pediatr Gastroenterol Nutr 38, 457-458 (2004).
-
(2004)
J Pediatr Gastroenterol Nutr
, vol.38
, pp. 457-458
-
-
Kunz, A.N.1
Noel, J.M.2
Fairchok, M.P.3
-
51
-
-
13144253139
-
Pathogenic relevance of Lactobacillus: A retrospective review of over 200 cases
-
Cannon, J. P., Lee, T. A., Bolanos, J. T. & Danziger, L. H. Pathogenic relevance of Lactobacillus: a retrospective review of over 200 cases. European journal of clinical microbiology & infectious diseases: official publication of the European Society of Clinical Microbiology 24, 31-40 (2005).
-
(2005)
European Journal of Clinical Microbiology & Infectious Diseases: Official Publication of the European Society of Clinical Microbiology
, vol.24
, pp. 31-40
-
-
Cannon, J.P.1
Lee, T.A.2
Bolanos, J.T.3
Danziger, L.H.4
-
52
-
-
39449089584
-
Probiotic prophylaxis in predicted severe acute pancreatitis: A randomised, double-blind, placebo-controlled trial
-
Besselink, M. G. et al. Probiotic prophylaxis in predicted severe acute pancreatitis: a randomised, double-blind, placebo-controlled trial. Lancet 371, 651-659 (2008).
-
(2008)
Lancet
, vol.371
, pp. 651-659
-
-
Besselink, M.G.1
-
53
-
-
0034111016
-
Phylogenetic relationships of butyrate-producing bacteria from the human gut
-
Barcenilla, A. et al. Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microbiol 66, 1654-1661 (2000).
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1654-1661
-
-
Barcenilla, A.1
-
54
-
-
84864560961
-
Structural changes of gut microbiota during berberine-mediated prevention of obesity and insulin resistance in high-fat diet-fed rats
-
Zhang, X. et al. Structural changes of gut microbiota during berberine-mediated prevention of obesity and insulin resistance in high-fat diet-fed rats. PLoS One 7, e42529 (2012).
-
(2012)
PLoS One
, vol.7
, pp. e42529
-
-
Zhang, X.1
-
55
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
-
Chin, C. S. et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10, 563-569 (2013).
-
(2013)
Nat Methods
, vol.10
, pp. 563-569
-
-
Chin, C.S.1
-
56
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
Delcher, A. L., Bratke, K. A., Powers, E. C. & Salzberg, S. L. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23, 673-679 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
57
-
-
67849101838
-
CVTree update: A newly designed phylogenetic study platform using composition vectors and whole genomes
-
Xu, Z. & Hao, B. CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes. Nucleic Acids Res 37, W174-178 (2009).
-
(2009)
Nucleic Acids Res
, vol.37
, pp. W174-178
-
-
Xu, Z.1
Hao, B.2
-
58
-
-
33748116363
-
Effect of adiponectin on murine colitis induced by dextran sulfate sodium
-
Nishihara, T. et al. Effect of adiponectin on murine colitis induced by dextran sulfate sodium. Gastroenterology 131, 853-861 (2006).
-
(2006)
Gastroenterology
, vol.131
, pp. 853-861
-
-
Nishihara, T.1
-
59
-
-
70350666634
-
Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
-
Maslowski, K. M. et al. Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43. Nature 461, 1282-1286 (2009).
-
(2009)
Nature
, vol.461
, pp. 1282-1286
-
-
Maslowski, K.M.1
-
60
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
Godon, J. J., Zumstein, E., Dabert, P., Habouzit, F. & Moletta, R. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 63, 2802-2813 (1997).
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2802-2813
-
-
Godon, J.J.1
Zumstein, E.2
Dabert, P.3
Habouzit, F.4
Moletta, R.5
-
61
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
62
-
-
84884904719
-
UPARSE: Highly accurate OTU sequences from microbial amplicon reads
-
Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10, 996-998 (2013).
-
(2013)
Nat Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
63
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. & Knight, R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194-2200 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
64
-
-
84891787231
-
Ribosomal database project: Data and tools for high throughput rRNA analysis
-
Cole, J. R. et al. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res 42, D633-642 (2014).
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D633-642
-
-
Cole, J.R.1
-
65
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7, 335-336 (2010).
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
-
66
-
-
0035478854
-
Random forests
-
Breiman, L. Random forests. Machine learning 45, 5-32 (2001).
-
(2001)
Machine Learning
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
67
-
-
84865733148
-
Inferring correlation networks from genomic survey data
-
Friedman, J. & Alm, E. J. Inferring correlation networks from genomic survey data. PLoS Comput Biol 8, e1002687 (2012).
-
(2012)
PLoS Comput Biol
, vol.8
, pp. e1002687
-
-
Friedman, J.1
Alm, E.J.2
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