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Volumn 6, Issue , 2016, Pages

Accelerated dysbiosis of gut microbiota during aggravation of DSS-induced colitis by a butyrate-producing bacterium

Author keywords

[No Author keywords available]

Indexed keywords

BUTYRIC ACID; DEXTRAN SULFATE;

EID: 84973342043     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep27572     Document Type: Article
Times cited : (169)

References (68)
  • 1
    • 0019128183 scopus 로고
    • Role of anaerobic bacteria in the metabolic welfare of the colonic mucosa in man
    • Roediger, W. E. Role of anaerobic bacteria in the metabolic welfare of the colonic mucosa in man. Gut 21, 793-798 (1980).
    • (1980) Gut , vol.21 , pp. 793-798
    • Roediger, W.E.1
  • 2
    • 84890564250 scopus 로고    scopus 로고
    • Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells
    • Furusawa, Y. et al. Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells. Nature 504, 446-450 (2013).
    • (2013) Nature , vol.504 , pp. 446-450
    • Furusawa, Y.1
  • 3
    • 84890550163 scopus 로고    scopus 로고
    • Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation
    • Arpaia, N. et al. Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature 504, 451-455 (2013).
    • (2013) Nature , vol.504 , pp. 451-455
    • Arpaia, N.1
  • 5
    • 0026691619 scopus 로고
    • Effect of butyrate enemas on the colonic mucosa in distal ulcerative colitis
    • Scheppach, W. et al. Effect of butyrate enemas on the colonic mucosa in distal ulcerative colitis. Gastroenterology 103, 51-56 (1992).
    • (1992) Gastroenterology , vol.103 , pp. 51-56
    • Scheppach, W.1
  • 7
    • 78649686679 scopus 로고    scopus 로고
    • A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes
    • e1841
    • Willing, B. P. et al. A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology 139, 1844-1854.e1841 (2010).
    • (2010) Gastroenterology , vol.139 , pp. 1844-1854
    • Willing, B.P.1
  • 8
    • 84938770891 scopus 로고    scopus 로고
    • Reduction of butyrate- and methane-producing microorganisms in patients with Irritable Bowel Syndrome
    • Pozuelo, M. et al. Reduction of butyrate- and methane-producing microorganisms in patients with Irritable Bowel Syndrome. Sci Rep 5, 12693 (2015).
    • (2015) Sci Rep , vol.5 , pp. 12693
    • Pozuelo, M.1
  • 9
    • 84867074831 scopus 로고    scopus 로고
    • A metagenome-wide association study of gut microbiota in type 2 diabetes
    • Qin, J. et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 490, 55-60 (2012).
    • (2012) Nature , vol.490 , pp. 55-60
    • Qin, J.1
  • 10
    • 84855923925 scopus 로고    scopus 로고
    • Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers
    • Wang, T. et al. Structural segregation of gut microbiota between colorectal cancer patients and healthy volunteers. Isme j 6, 320-329 (2012).
    • (2012) Isme J , vol.6 , pp. 320-329
    • Wang, T.1
  • 12
    • 76049120713 scopus 로고    scopus 로고
    • Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease
    • Van Immerseel, F. et al. Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease. J Med Microbiol 59, 141-143 (2010).
    • (2010) J Med Microbiol , vol.59 , pp. 141-143
    • Van Immerseel, F.1
  • 13
    • 84887423043 scopus 로고    scopus 로고
    • Butyrate-producing bacteria as pharmabiotics for inflammatory bowel disease
    • Marteau, P. Butyrate-producing bacteria as pharmabiotics for inflammatory bowel disease. Gut 62, 1673 (2013).
    • (2013) Gut , vol.62 , pp. 1673
    • Marteau, P.1
  • 15
    • 79959271087 scopus 로고    scopus 로고
    • Intestinal homeostasis and its breakdown in inflammatory bowel disease
    • Maloy, K. J. & Powrie, F. Intestinal homeostasis and its breakdown in inflammatory bowel disease. Nature 474, 298-306 (2011).
    • (2011) Nature , vol.474 , pp. 298-306
    • Maloy, K.J.1    Powrie, F.2
  • 17
    • 70349488325 scopus 로고    scopus 로고
    • Low counts of Faecalibacterium prausnitzii in colitis microbiota
    • Sokol, H. et al. Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm Bowel Dis 15, 1183-1189 (2009).
    • (2009) Inflamm Bowel Dis , vol.15 , pp. 1183-1189
    • Sokol, H.1
  • 18
    • 84904048875 scopus 로고    scopus 로고
    • A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis
    • Machiels, K. et al. A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis. Gut 63, 1275-1283 (2014).
    • (2014) Gut , vol.63 , pp. 1275-1283
    • Machiels, K.1
  • 19
    • 78649622569 scopus 로고    scopus 로고
    • Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray
    • Kang, S. et al. Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray. Inflamm Bowel Dis 16, 2034-2042 (2010).
    • (2010) Inflamm Bowel Dis , vol.16 , pp. 2034-2042
    • Kang, S.1
  • 20
    • 55949124035 scopus 로고    scopus 로고
    • Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
    • Sokol, H. et al. Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci USA 105, 16731-16736 (2008).
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 16731-16736
    • Sokol, H.1
  • 21
    • 84891743578 scopus 로고    scopus 로고
    • Progress towards butyrate-producing pharmabiotics: Butyricicoccus pullicaecorum capsule and efficacy in TNBS models in comparison with therapeutics
    • Eeckhaut, V., Ducatelle, R., Sas, B., Vermeire, S. & Van Immerseel, F. Progress towards butyrate-producing pharmabiotics: Butyricicoccus pullicaecorum capsule and efficacy in TNBS models in comparison with therapeutics. Gut 63, 367 (2014).
    • (2014) Gut , vol.63 , pp. 367
    • Eeckhaut, V.1    Ducatelle, R.2    Sas, B.3    Vermeire, S.4    Van Immerseel, F.5
  • 22
    • 0034091384 scopus 로고    scopus 로고
    • Preventive efficacy of butyrate enemas and oral administration of Clostridium butyricum M588 in dextran sodium sulfate-induced colitis in rats
    • Okamoto, T. et al. Preventive efficacy of butyrate enemas and oral administration of Clostridium butyricum M588 in dextran sodium sulfate-induced colitis in rats. J Gastroenterol 35, 341-346 (2000).
    • (2000) J Gastroenterol , vol.35 , pp. 341-346
    • Okamoto, T.1
  • 23
    • 33645096810 scopus 로고    scopus 로고
    • Eubacterium limosum ameliorates experimental colitis and metabolite of microbe attenuates colonic inflammatory action with increase of mucosal integrity
    • Kanauchi, O. et al. Eubacterium limosum ameliorates experimental colitis and metabolite of microbe attenuates colonic inflammatory action with increase of mucosal integrity. World J Gastroenterol 12, 1071-1077 (2006).
    • (2006) World J Gastroenterol , vol.12 , pp. 1071-1077
    • Kanauchi, O.1
  • 25
    • 77649119543 scopus 로고    scopus 로고
    • Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene
    • Louis, P., Young, P., Holtrop, G. & Flint, H. J. Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environ Microbiol 12, 304-314 (2010).
    • (2010) Environ Microbiol , vol.12 , pp. 304-314
    • Louis, P.1    Young, P.2    Holtrop, G.3    Flint, H.J.4
  • 26
    • 84899787502 scopus 로고    scopus 로고
    • Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data
    • Vital, M., Howe, A. C. & Tiedje, J. M. Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data. MBio 5, e00889 (2014).
    • (2014) MBio , vol.5 , pp. e00889
    • Vital, M.1    Howe, A.C.2    Tiedje, J.M.3
  • 27
    • 0036793753 scopus 로고    scopus 로고
    • Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine
    • Duncan, S. H., Barcenilla, A., Stewart, C. S., Pryde, S. E. & Flint, H. J. Acetate utilization and butyryl coenzyme A (CoA):acetate-CoA transferase in butyrate-producing bacteria from the human large intestine. Appl Environ Microbiol 68, 5186-5190 (2002).
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5186-5190
    • Duncan, S.H.1    Barcenilla, A.2    Stewart, C.S.3    Pryde, S.E.4    Flint, H.J.5
  • 28
    • 84867337248 scopus 로고    scopus 로고
    • Anaerostipes hadrus comb. Nov., a dominant species within the human colonic microbiota; Reclassification of Eubacterium hadrum Moore et al. 1976
    • Allen-Vercoe, E. et al. Anaerostipes hadrus comb. nov., a dominant species within the human colonic microbiota; reclassification of Eubacterium hadrum Moore et al. 1976. Anaerobe 18, 523-529 (2012).
    • (2012) Anaerobe , vol.18 , pp. 523-529
    • Allen-Vercoe, E.1
  • 29
    • 84861904854 scopus 로고    scopus 로고
    • VFDB 2012 update: Toward the genetic diversity and molecular evolution of bacterial virulence factors
    • Chen, L., Xiong, Z., Sun, L., Yang, J. & Jin, Q. VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res 40, D641-645 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. D641-645
    • Chen, L.1    Xiong, Z.2    Sun, L.3    Yang, J.4    Jin, Q.5
  • 30
    • 0030794060 scopus 로고    scopus 로고
    • Inflammatory bowel disease: An immunity-mediated condition triggered by bacterial infection with Helicobacter hepaticus
    • Cahill, R. J. et al. Inflammatory bowel disease: an immunity-mediated condition triggered by bacterial infection with Helicobacter hepaticus. Infect Immun 65, 3126-3131 (1997).
    • (1997) Infect Immun , vol.65 , pp. 3126-3131
    • Cahill, R.J.1
  • 31
    • 0035757522 scopus 로고    scopus 로고
    • The role of microflora in the development of intestinal inflammation: Acute and chronic colitis induced by dextran sulfate in germ-free and conventionally reared immunocompetent and immunodeficient mice
    • Hudcovic, T., Stepankova, R., Cebra, J. & Tlaskalova-Hogenova, H. The role of microflora in the development of intestinal inflammation: acute and chronic colitis induced by dextran sulfate in germ-free and conventionally reared immunocompetent and immunodeficient mice. Folia Microbiol (Praha) 46, 565-572 (2001).
    • (2001) Folia Microbiol (Praha) , vol.46 , pp. 565-572
    • Hudcovic, T.1    Stepankova, R.2    Cebra, J.3    Tlaskalova-Hogenova, H.4
  • 32
    • 38649129512 scopus 로고    scopus 로고
    • Shift towards pro-inflammatory intestinal bacteria aggravates acute murine colitis via Toll-like receptors 2 and 4
    • Heimesaat, M. M. et al. Shift towards pro-inflammatory intestinal bacteria aggravates acute murine colitis via Toll-like receptors 2 and 4. PLoS One 2, e662 (2007).
    • (2007) PLoS One , vol.2 , pp. e662
    • Heimesaat, M.M.1
  • 33
    • 84899484295 scopus 로고    scopus 로고
    • Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
    • Schwab, C. & Berry, D. Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery. Isme j 8, 1101-1114 (2014).
    • (2014) Isme J , vol.8 , pp. 1101-1114
    • Schwab, C.1    Berry, D.2
  • 34
    • 84867744191 scopus 로고    scopus 로고
    • Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis
    • Berry, D. et al. Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis. Isme j 6, 2091-2106 (2012).
    • (2012) Isme J , vol.6 , pp. 2091-2106
    • Berry, D.1
  • 35
    • 84861992014 scopus 로고    scopus 로고
    • The application of ecological theory toward an understanding of the human microbiome
    • Costello, E. K., Stagaman, K., Dethlefsen, L., Bohannan, B. J. & Relman, D. A. The application of ecological theory toward an understanding of the human microbiome. Science 336, 1255-1262 (2012).
    • (2012) Science , vol.336 , pp. 1255-1262
    • Costello, E.K.1    Stagaman, K.2    Dethlefsen, L.3    Bohannan, B.J.4    Relman, D.A.5
  • 36
    • 84878465280 scopus 로고    scopus 로고
    • Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
    • Everard, A. et al. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc Natl Acad Sci USA 110, 9066-9071 (2013).
    • (2013) Proc Natl Acad Sci USA , vol.110 , pp. 9066-9071
    • Everard, A.1
  • 37
    • 40549106737 scopus 로고    scopus 로고
    • The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract
    • Derrien, M., Collado, M. C., Ben-Amor, K., Salminen, S. & de Vos, W. M. The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract. Appl Environ Microbiol 74, 1646-1648 (2008).
    • (2008) Appl Environ Microbiol , vol.74 , pp. 1646-1648
    • Derrien, M.1    Collado, M.C.2    Ben-Amor, K.3    Salminen, S.4    De Vos, W.M.5
  • 38
    • 83655210633 scopus 로고    scopus 로고
    • Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader akkermansia muciniphila
    • Derrien, M. et al. Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin-Degrader Akkermansia muciniphila. Front Microbiol 2, 166 (2011).
    • (2011) Front Microbiol , vol.2 , pp. 166
    • Derrien, M.1
  • 39
    • 84897960120 scopus 로고    scopus 로고
    • An increase in the Akkermansia spp. Population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice
    • Shin, N. R. et al. An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice. Gut 63, 727-735 (2014).
    • (2014) Gut , vol.63 , pp. 727-735
    • Shin, N.R.1
  • 40
    • 84902262539 scopus 로고    scopus 로고
    • Immunological alteration and changes of gut microbiota after dextran sulfate sodium (DSS) administration in mice
    • Hakansson, A. et al. Immunological alteration and changes of gut microbiota after dextran sulfate sodium (DSS) administration in mice. Clinical and experimental medicine 15, 107-120 (2015).
    • (2015) Clinical and Experimental Medicine , vol.15 , pp. 107-120
    • Hakansson, A.1
  • 41
    • 84868101602 scopus 로고    scopus 로고
    • Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice
    • Reikvam, D. H. et al. Epithelial-microbial crosstalk in polymeric Ig receptor deficient mice. European journal of immunology 42, 2959-2970 (2012).
    • (2012) European Journal of Immunology , vol.42 , pp. 2959-2970
    • Reikvam, D.H.1
  • 42
    • 84881148921 scopus 로고    scopus 로고
    • Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults
    • Weir, T. L. et al. Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults. PLoS One 8, e70803 (2013).
    • (2013) PLoS One , vol.8 , pp. e70803
    • Weir, T.L.1
  • 44
    • 84883813272 scopus 로고    scopus 로고
    • Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice
    • Ganesh, B. P., Klopfleisch, R., Loh, G. & Blaut, M. Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice. PLoS One 8, e74963 (2013).
    • (2013) PLoS One , vol.8 , pp. e74963
    • Ganesh, B.P.1    Klopfleisch, R.2    Loh, G.3    Blaut, M.4
  • 45
    • 0029823208 scopus 로고    scopus 로고
    • The role of the Lps gene in experimental ulcerative colitis in mice
    • Lange, S., Delbro, D. S., Jennische, E. & Mattsby-Baltzer, I. The role of the Lps gene in experimental ulcerative colitis in mice. Apmis 104, 823-833 (1996).
    • (1996) Apmis , vol.104 , pp. 823-833
    • Lange, S.1    Delbro, D.S.2    Jennische, E.3    Mattsby-Baltzer, I.4
  • 46
    • 69449092649 scopus 로고    scopus 로고
    • Parasutterella excrementihominis gen. Nov., sp. Nov., a member of the family Alcaligenaceae isolated from human faeces
    • Nagai, F., Morotomi, M., Sakon, H. & Tanaka, R. Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces. Int J Syst Evol Microbiol 59, 1793-1797 (2009).
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1793-1797
    • Nagai, F.1    Morotomi, M.2    Sakon, H.3    Tanaka, R.4
  • 47
    • 84973293219 scopus 로고    scopus 로고
    • P-237 multiple double-barcoding 16S sequencing on the MiSeq platform to study the gut microbiome in Ashkenazi Jews with Crohn's disease
    • Hu, J., Franzen, O., Pei, Z., Itzkowitz, S. & Peter, I. P-237 Multiple Double-barcoding 16S Sequencing on the MiSeq Platform to Study the Gut Microbiome in Ashkenazi Jews with Crohn's Disease. Inflammatory Bowel Diseases 19, S119-S121 (2013).
    • (2013) Inflammatory Bowel Diseases , vol.19 , pp. S119-S121
    • Hu, J.1    Franzen, O.2    Pei, Z.3    Itzkowitz, S.4    Peter, I.5
  • 49
    • 0034890663 scopus 로고    scopus 로고
    • Lactobacillus casei subsp. Rhamnosus sepsis in a patient with ulcerative colitis
    • Farina, C., Arosio, M., Mangia, M. & Moioli, F. Lactobacillus casei subsp. rhamnosus sepsis in a patient with ulcerative colitis. J Clin Gastroenterol 33, 251-252 (2001).
    • (2001) J Clin Gastroenterol , vol.33 , pp. 251-252
    • Farina, C.1    Arosio, M.2    Mangia, M.3    Moioli, F.4
  • 50
    • 8644289660 scopus 로고    scopus 로고
    • Two cases of Lactobacillus bacteremia during probiotic treatment of short gut syndrome
    • Kunz, A. N., Noel, J. M. & Fairchok, M. P. Two cases of Lactobacillus bacteremia during probiotic treatment of short gut syndrome. J Pediatr Gastroenterol Nutr 38, 457-458 (2004).
    • (2004) J Pediatr Gastroenterol Nutr , vol.38 , pp. 457-458
    • Kunz, A.N.1    Noel, J.M.2    Fairchok, M.P.3
  • 52
    • 39449089584 scopus 로고    scopus 로고
    • Probiotic prophylaxis in predicted severe acute pancreatitis: A randomised, double-blind, placebo-controlled trial
    • Besselink, M. G. et al. Probiotic prophylaxis in predicted severe acute pancreatitis: a randomised, double-blind, placebo-controlled trial. Lancet 371, 651-659 (2008).
    • (2008) Lancet , vol.371 , pp. 651-659
    • Besselink, M.G.1
  • 53
    • 0034111016 scopus 로고    scopus 로고
    • Phylogenetic relationships of butyrate-producing bacteria from the human gut
    • Barcenilla, A. et al. Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microbiol 66, 1654-1661 (2000).
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1654-1661
    • Barcenilla, A.1
  • 54
    • 84864560961 scopus 로고    scopus 로고
    • Structural changes of gut microbiota during berberine-mediated prevention of obesity and insulin resistance in high-fat diet-fed rats
    • Zhang, X. et al. Structural changes of gut microbiota during berberine-mediated prevention of obesity and insulin resistance in high-fat diet-fed rats. PLoS One 7, e42529 (2012).
    • (2012) PLoS One , vol.7 , pp. e42529
    • Zhang, X.1
  • 55
    • 84880798154 scopus 로고    scopus 로고
    • Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
    • Chin, C. S. et al. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10, 563-569 (2013).
    • (2013) Nat Methods , vol.10 , pp. 563-569
    • Chin, C.S.1
  • 56
    • 34147132825 scopus 로고    scopus 로고
    • Identifying bacterial genes and endosymbiont DNA with Glimmer
    • Delcher, A. L., Bratke, K. A., Powers, E. C. & Salzberg, S. L. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23, 673-679 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 673-679
    • Delcher, A.L.1    Bratke, K.A.2    Powers, E.C.3    Salzberg, S.L.4
  • 57
    • 67849101838 scopus 로고    scopus 로고
    • CVTree update: A newly designed phylogenetic study platform using composition vectors and whole genomes
    • Xu, Z. & Hao, B. CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes. Nucleic Acids Res 37, W174-178 (2009).
    • (2009) Nucleic Acids Res , vol.37 , pp. W174-178
    • Xu, Z.1    Hao, B.2
  • 58
    • 33748116363 scopus 로고    scopus 로고
    • Effect of adiponectin on murine colitis induced by dextran sulfate sodium
    • Nishihara, T. et al. Effect of adiponectin on murine colitis induced by dextran sulfate sodium. Gastroenterology 131, 853-861 (2006).
    • (2006) Gastroenterology , vol.131 , pp. 853-861
    • Nishihara, T.1
  • 59
    • 70350666634 scopus 로고    scopus 로고
    • Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43
    • Maslowski, K. M. et al. Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43. Nature 461, 1282-1286 (2009).
    • (2009) Nature , vol.461 , pp. 1282-1286
    • Maslowski, K.M.1
  • 60
    • 0030872620 scopus 로고    scopus 로고
    • Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
    • Godon, J. J., Zumstein, E., Dabert, P., Habouzit, F. & Moletta, R. Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 63, 2802-2813 (1997).
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2802-2813
    • Godon, J.J.1    Zumstein, E.2    Dabert, P.3    Habouzit, F.4    Moletta, R.5
  • 61
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar, R. C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26, 2460-2461 (2010).
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 62
    • 84884904719 scopus 로고    scopus 로고
    • UPARSE: Highly accurate OTU sequences from microbial amplicon reads
    • Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10, 996-998 (2013).
    • (2013) Nat Methods , vol.10 , pp. 996-998
    • Edgar, R.C.1
  • 64
    • 84891787231 scopus 로고    scopus 로고
    • Ribosomal database project: Data and tools for high throughput rRNA analysis
    • Cole, J. R. et al. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res 42, D633-642 (2014).
    • (2014) Nucleic Acids Res , vol.42 , pp. D633-642
    • Cole, J.R.1
  • 65
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7, 335-336 (2010).
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 66
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman, L. Random forests. Machine learning 45, 5-32 (2001).
    • (2001) Machine Learning , vol.45 , pp. 5-32
    • Breiman, L.1
  • 67
    • 84865733148 scopus 로고    scopus 로고
    • Inferring correlation networks from genomic survey data
    • Friedman, J. & Alm, E. J. Inferring correlation networks from genomic survey data. PLoS Comput Biol 8, e1002687 (2012).
    • (2012) PLoS Comput Biol , vol.8 , pp. e1002687
    • Friedman, J.1    Alm, E.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.