메뉴 건너뛰기




Volumn 24, Issue 1, 2014, Pages 10-23

Template-based structure modeling of protein-protein interactions

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; ANALYTIC METHOD; BINDING AFFINITY; BINDING SITE; MOLECULAR DOCKING; PREDICTION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; PROTEIN QUATERNARY STRUCTURE; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; PROTEIN TERTIARY STRUCTURE; REVIEW; STRUCTURE ANALYSIS; TEMPLATE BASED MODELING; AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; HUMAN; METABOLISM; MOLECULAR GENETICS; PROCEDURES; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN DATABASE;

EID: 84890029384     PISSN: 0959440X     EISSN: 1879033X     Source Type: Journal    
DOI: 10.1016/j.sbi.2013.11.005     Document Type: Review
Times cited : (133)

References (83)
  • 4
    • 84859618211 scopus 로고    scopus 로고
    • The Protein Structure Initiative: achievements and visions for the future
    • Montelione G.T. The Protein Structure Initiative: achievements and visions for the future. F1000 Biol Rep 2012, 4:7.
    • (2012) F1000 Biol Rep , vol.4 , pp. 7
    • Montelione, G.T.1
  • 5
    • 79953071469 scopus 로고    scopus 로고
    • Three-dimensional modeling of protein interactions and complexes is going'omics
    • Stein A., Mosca R., Aloy P. Three-dimensional modeling of protein interactions and complexes is going'omics. Curr Opin Struct Biol 2011, 21:200-208.
    • (2011) Curr Opin Struct Biol , vol.21 , pp. 200-208
    • Stein, A.1    Mosca, R.2    Aloy, P.3
  • 8
    • 84863079450 scopus 로고    scopus 로고
    • Assigning confidence scores to protein-protein interactions
    • Yu J., Murali T., Finley R.L. Assigning confidence scores to protein-protein interactions. Methods Mol Biol 2012, 812:161-174.
    • (2012) Methods Mol Biol , vol.812 , pp. 161-174
    • Yu, J.1    Murali, T.2    Finley, R.L.3
  • 9
    • 1242270553 scopus 로고    scopus 로고
    • Protein-protein docking: is the glass half-full or half-empty?
    • Vajda S., Camacho C.J. Protein-protein docking: is the glass half-full or half-empty?. Trends Biotechnol 2004, 22:110-116.
    • (2004) Trends Biotechnol , vol.22 , pp. 110-116
    • Vajda, S.1    Camacho, C.J.2
  • 10
    • 76149086786 scopus 로고    scopus 로고
    • Protein-protein docking dealing with the unknown
    • Moreira I.S., Fernandes P.A., Ramos M.J. Protein-protein docking dealing with the unknown. J Comput Chem 2010, 31:317-342.
    • (2010) J Comput Chem , vol.31 , pp. 317-342
    • Moreira, I.S.1    Fernandes, P.A.2    Ramos, M.J.3
  • 11
    • 78149422216 scopus 로고    scopus 로고
    • Protein-protein docking tested in blind predictions: the CAPRI experiment
    • Janin J. Protein-protein docking tested in blind predictions: the CAPRI experiment. Mol Biosyst 2010, 6:2351-2362.
    • (2010) Mol Biosyst , vol.6 , pp. 2351-2362
    • Janin, J.1
  • 12
    • 77957934896 scopus 로고    scopus 로고
    • Docking and scoring protein interactions: CAPRI 2009
    • Lensink M., Wodak S. Docking and scoring protein interactions: CAPRI 2009. Proteins 2010, 10.1002/prot.22818.
    • (2010) Proteins
    • Lensink, M.1    Wodak, S.2
  • 13
    • 0022706389 scopus 로고
    • The relation between the divergence of sequence and structure in proteins
    • Chothia C., Lesk A.M. The relation between the divergence of sequence and structure in proteins. EMBO J 1986, 5:823-826.
    • (1986) EMBO J , vol.5 , pp. 823-826
    • Chothia, C.1    Lesk, A.M.2
  • 14
    • 0025830469 scopus 로고
    • A method to identify protein sequences that fold into a known three-dimensional structure
    • Bowie J.U., Luthy R., Eisenberg D. A method to identify protein sequences that fold into a known three-dimensional structure. Science 1991, 253:164-170.
    • (1991) Science , vol.253 , pp. 164-170
    • Bowie, J.U.1    Luthy, R.2    Eisenberg, D.3
  • 15
    • 33646002994 scopus 로고    scopus 로고
    • Comparative modeling for protein structure prediction
    • Ginalski K. Comparative modeling for protein structure prediction. Curr Opin Struct Biol 2006, 16:172-177.
    • (2006) Curr Opin Struct Biol , vol.16 , pp. 172-177
    • Ginalski, K.1
  • 16
    • 44949145113 scopus 로고    scopus 로고
    • Progress and challenges in protein structure prediction
    • Zhang Y. Progress and challenges in protein structure prediction. Curr Opin Struct Biol 2008, 18:342-348.
    • (2008) Curr Opin Struct Biol , vol.18 , pp. 342-348
    • Zhang, Y.1
  • 17
    • 80855132939 scopus 로고    scopus 로고
    • Assessment of template based protein structure predictions in CASP9
    • Mariani V., Kiefer F., Schmidt T., Haas J., Schwede T. Assessment of template based protein structure predictions in CASP9. Proteins 2011, 79(Suppl 10):37-58.
    • (2011) Proteins , vol.79 , Issue.SUPPL 10 , pp. 37-58
    • Mariani, V.1    Kiefer, F.2    Schmidt, T.3    Haas, J.4    Schwede, T.5
  • 18
    • 79960164372 scopus 로고    scopus 로고
    • Protein-protein complex structure predictions by multimeric threading and template recombination
    • Mukherjee S., Zhang Y. Protein-protein complex structure predictions by multimeric threading and template recombination. Structure 2011, 19:955-966.
    • (2011) Structure , vol.19 , pp. 955-966
    • Mukherjee, S.1    Zhang, Y.2
  • 19
    • 77957959671 scopus 로고    scopus 로고
    • Docking by structural similarity at protein-protein interfaces
    • Sinha R., Kundrotas P.J., Vakser I.A. Docking by structural similarity at protein-protein interfaces. Proteins 2010, 78:3235-3241.
    • (2010) Proteins , vol.78 , pp. 3235-3241
    • Sinha, R.1    Kundrotas, P.J.2    Vakser, I.A.3
  • 21
    • 84875464398 scopus 로고    scopus 로고
    • Mapping monomeric threading to protein-protein structure prediction
    • Guerler A., Govindarajoo B., Zhang Y. Mapping monomeric threading to protein-protein structure prediction. J Chem Inf Model 2013, 53:717-725.
    • (2013) J Chem Inf Model , vol.53 , pp. 717-725
    • Guerler, A.1    Govindarajoo, B.2    Zhang, Y.3
  • 22
    • 84862233055 scopus 로고    scopus 로고
    • Templates are available to model nearly all complexes of structurally characterized proteins
    • Kundrotas P.J., Zhu Z., Janin J., Vakser I.A. Templates are available to model nearly all complexes of structurally characterized proteins. Proc Natl Acad Sci U S A 2012, 109:9438-9441.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 9438-9441
    • Kundrotas, P.J.1    Zhu, Z.2    Janin, J.3    Vakser, I.A.4
  • 23
    • 80052411919 scopus 로고    scopus 로고
    • Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
    • Tuncbag N., Gursoy A., Nussinov R., Keskin O. Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM. Nat Protoc 2011, 6:1341-1354.
    • (2011) Nat Protoc , vol.6 , pp. 1341-1354
    • Tuncbag, N.1    Gursoy, A.2    Nussinov, R.3    Keskin, O.4
  • 24
    • 0037110589 scopus 로고    scopus 로고
    • MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading
    • Lu L., Lu H., Skolnick J. MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading. Proteins 2002, 49:350-364.
    • (2002) Proteins , vol.49 , pp. 350-364
    • Lu, L.1    Lu, H.2    Skolnick, J.3
  • 25
    • 48749087342 scopus 로고    scopus 로고
    • Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles
    • Kundrotas P.J., Lensink M.F., Alexov E. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles. Int J Biol Macromol 2008, 43:198-208.
    • (2008) Int J Biol Macromol , vol.43 , pp. 198-208
    • Kundrotas, P.J.1    Lensink, M.F.2    Alexov, E.3
  • 26
    • 77954278629 scopus 로고    scopus 로고
    • Struct2Net: a web service to predict protein-protein interactions using a structure-based approach
    • Singh R., Park D., Xu J., Hosur R., Berger B. Struct2Net: a web service to predict protein-protein interactions using a structure-based approach. Nucleic Acids Res 2010, 38:W508-W515.
    • (2010) Nucleic Acids Res , vol.38
    • Singh, R.1    Park, D.2    Xu, J.3    Hosur, R.4    Berger, B.5
  • 27
    • 78751584760 scopus 로고    scopus 로고
    • IWRAP: an interface threading approach with application to prediction of cancer-related protein-protein interactions
    • Hosur R., Xu J., Bienkowska J., Berger B. iWRAP: an interface threading approach with application to prediction of cancer-related protein-protein interactions. J Mol Biol 2011, 405:1295-1310.
    • (2011) J Mol Biol , vol.405 , pp. 1295-1310
    • Hosur, R.1    Xu, J.2    Bienkowska, J.3    Berger, B.4
  • 28
    • 38549171298 scopus 로고    scopus 로고
    • M-TASSER: an algorithm for protein quaternary structure prediction
    • Chen H., Skolnick J. M-TASSER: an algorithm for protein quaternary structure prediction. Biophys J 2008, 94:918-928.
    • (2008) Biophys J , vol.94 , pp. 918-928
    • Chen, H.1    Skolnick, J.2
  • 29
    • 84888307602 scopus 로고    scopus 로고
    • Global and local structural similarity in protein-protein complexes: implications for template-based docking
    • Kundrotas P.J., Vakser I.A. Global and local structural similarity in protein-protein complexes: implications for template-based docking. Proteins 2013.
    • (2013) Proteins
    • Kundrotas, P.J.1    Vakser, I.A.2
  • 31
    • 46449123146 scopus 로고    scopus 로고
    • MUSTER: improving protein sequence profile-profile alignments by using multiple sources of structure information
    • Wu S., Zhang Y. MUSTER: improving protein sequence profile-profile alignments by using multiple sources of structure information. Proteins 2008, 72:547-556.
    • (2008) Proteins , vol.72 , pp. 547-556
    • Wu, S.1    Zhang, Y.2
  • 32
    • 3142764482 scopus 로고    scopus 로고
    • Development and large scale benchmark testing of the PROSPECTOR 3.0 threading algorithm
    • Skolnick J., Kihara D., Zhang Y. Development and large scale benchmark testing of the PROSPECTOR 3.0 threading algorithm. Protein 2004, 56:502-518.
    • (2004) Protein , vol.56 , pp. 502-518
    • Skolnick, J.1    Kihara, D.2    Zhang, Y.3
  • 33
    • 0037340493 scopus 로고    scopus 로고
    • Development of unified statistical potentials describing protein-protein interactions
    • Lu H., Lu L., Skolnick J. Development of unified statistical potentials describing protein-protein interactions. Biophys J 2003, 84:1895-1901.
    • (2003) Biophys J , vol.84 , pp. 1895-1901
    • Lu, H.1    Lu, L.2    Skolnick, J.3
  • 34
    • 17644392830 scopus 로고    scopus 로고
    • TM-align: a protein structure alignment algorithm based on the TM-score
    • Zhang Y., Skolnick J. TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res. 2005, 33:2302-2309.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2302-2309
    • Zhang, Y.1    Skolnick, J.2
  • 35
    • 0346122798 scopus 로고    scopus 로고
    • GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences
    • Petrey D., Honig B. GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences. Methods Enzymol 2003, 374:492-509.
    • (2003) Methods Enzymol , vol.374 , pp. 492-509
    • Petrey, D.1    Honig, B.2
  • 36
    • 2442456104 scopus 로고    scopus 로고
    • A method for simultaneous alignment of multiple protein structures
    • Shatsky M., Nussinov R., Wolfson H.J. A method for simultaneous alignment of multiple protein structures. Proteins 2004, 56:143-156.
    • (2004) Proteins , vol.56 , pp. 143-156
    • Shatsky, M.1    Nussinov, R.2    Wolfson, H.J.3
  • 37
    • 84878552481 scopus 로고    scopus 로고
    • Low-resolution structural modeling of protein interactome
    • Vakser I.A. Low-resolution structural modeling of protein interactome. Curr Opin Struct Biol 2013.
    • (2013) Curr Opin Struct Biol
    • Vakser, I.A.1
  • 38
    • 84857788445 scopus 로고    scopus 로고
    • Large-scale mapping of human protein interactome using structural complexes
    • Tyagi M., Hashimoto K., Shoemaker B.A., Wuchty S., Panchenko A.R. Large-scale mapping of human protein interactome using structural complexes. EMBO Rep 2012, 13:266-271.
    • (2012) EMBO Rep , vol.13 , pp. 266-271
    • Tyagi, M.1    Hashimoto, K.2    Shoemaker, B.A.3    Wuchty, S.4    Panchenko, A.R.5
  • 39
    • 84896466868 scopus 로고    scopus 로고
    • Evaluating template-based and template-free protein-protein complex structure prediction
    • Vreven T., Hwang H., Pierce B., Weng Z. Evaluating template-based and template-free protein-protein complex structure prediction. Brief Bioinform 2013, 10.1093/bib/bbt047.
    • (2013) Brief Bioinform
    • Vreven, T.1    Hwang, H.2    Pierce, B.3    Weng, Z.4
  • 40
    • 0042386609 scopus 로고    scopus 로고
    • The relationship between sequence and interaction divergence in proteins
    • Aloy P., Ceulemans H., Stark A., Russell R.B. The relationship between sequence and interaction divergence in proteins. J Mol Biol 2003, 332:989-998.
    • (2003) J Mol Biol , vol.332 , pp. 989-998
    • Aloy, P.1    Ceulemans, H.2    Stark, A.3    Russell, R.B.4
  • 41
    • 11344269401 scopus 로고    scopus 로고
    • Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: implications for metabolic and signaling pathways
    • Rekha N., Machado S.M., Narayanan C., Krupa A., Srinivasan N. Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: implications for metabolic and signaling pathways. Proteins 2005, 58:339-353.
    • (2005) Proteins , vol.58 , pp. 339-353
    • Rekha, N.1    Machado, S.M.2    Narayanan, C.3    Krupa, A.4    Srinivasan, N.5
  • 42
    • 13844255392 scopus 로고    scopus 로고
    • Protein complexes: structure prediction challenges for the 21st century
    • Aloy P., Pichaud M., Russell R.B. Protein complexes: structure prediction challenges for the 21st century. Curr Opin Struct Biol 2005, 15:15-22.
    • (2005) Curr Opin Struct Biol , vol.15 , pp. 15-22
    • Aloy, P.1    Pichaud, M.2    Russell, R.B.3
  • 43
    • 33747150197 scopus 로고    scopus 로고
    • Protein binding site prediction using an empirical scoring function
    • Liang S.D., Zhang C., Liu S., Zhou Y.Q. Protein binding site prediction using an empirical scoring function. Nucleic Acids Res 2006, 34:3698-3707.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3698-3707
    • Liang, S.D.1    Zhang, C.2    Liu, S.3    Zhou, Y.Q.4
  • 44
    • 0037250158 scopus 로고    scopus 로고
    • InterPreTS: protein interaction prediction through tertiary structure
    • Aloy P., Russell R.B. InterPreTS: protein interaction prediction through tertiary structure. Bioinformatics 2003, 19:161-162.
    • (2003) Bioinformatics , vol.19 , pp. 161-162
    • Aloy, P.1    Russell, R.B.2
  • 45
    • 48449090519 scopus 로고    scopus 로고
    • HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures
    • Fukuhara N., Kawabata T. HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures. Nucleic Acids Res 2008, 36:W185-W189.
    • (2008) Nucleic Acids Res , vol.36
    • Fukuhara, N.1    Kawabata, T.2
  • 46
    • 60349125228 scopus 로고    scopus 로고
    • PRISM: protein-protein interaction prediction by structural matching
    • Keskin O., Nussinov R., Gursoy A. PRISM: protein-protein interaction prediction by structural matching. Methods Mol Biol 2008, 484:505-521.
    • (2008) Methods Mol Biol , vol.484 , pp. 505-521
    • Keskin, O.1    Nussinov, R.2    Gursoy, A.3
  • 48
    • 0037197902 scopus 로고    scopus 로고
    • Interrogating protein interaction networks through structural biology
    • Aloy P., Russell R.B. Interrogating protein interaction networks through structural biology. Proc Natl Acad Sci U S A 2002, 99:5896-5901.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 5896-5901
    • Aloy, P.1    Russell, R.B.2
  • 49
    • 34447286876 scopus 로고    scopus 로고
    • Prediction of interacting proteins from homology-modeled complex structures using sequence and structure scores
    • Fukuhara N., Go N., Kawabata T. Prediction of interacting proteins from homology-modeled complex structures using sequence and structure scores. Biophysics 2007, 3:13-26.
    • (2007) Biophysics , vol.3 , pp. 13-26
    • Fukuhara, N.1    Go, N.2    Kawabata, T.3
  • 50
    • 39049191929 scopus 로고    scopus 로고
    • Struct2net: integrating structure into protein-protein interaction prediction
    • Singh R., Xu J., Berger B. Struct2net: integrating structure into protein-protein interaction prediction. Pac Symp Biocomput 2006, 403-414.
    • (2006) Pac Symp Biocomput , pp. 403-414
    • Singh, R.1    Xu, J.2    Berger, B.3
  • 51
    • 5044235050 scopus 로고    scopus 로고
    • Ten thousand interactions for the molecular biologist
    • Aloy P., Russell R.B. Ten thousand interactions for the molecular biologist. Nat Biotechnol 2004, 22:1317-1321.
    • (2004) Nat Biotechnol , vol.22 , pp. 1317-1321
    • Aloy, P.1    Russell, R.B.2
  • 52
    • 84862206620 scopus 로고    scopus 로고
    • How many protein-protein interactions types exist in nature?
    • Garma L., Mukherjee S., Mitra P., Zhang Y. How many protein-protein interactions types exist in nature?. PLoS ONE 2012, 7:e33891.
    • (2012) PLoS ONE , vol.7
    • Garma, L.1    Mukherjee, S.2    Mitra, P.3    Zhang, Y.4
  • 53
    • 78651081229 scopus 로고    scopus 로고
    • Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected
    • Gao M., Skolnick J. Structural space of protein-protein interfaces is degenerate, close to complete, and highly connected. Proc Natl Acad Sci U S A 2010, 107:22517-22522.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 22517-22522
    • Gao, M.1    Skolnick, J.2
  • 55
    • 36749058849 scopus 로고    scopus 로고
    • Docking without docking: ISEARCH-prediction of interactions using known interfaces
    • Gunther S., May P., Hoppe A., Frommel C., Preissner R. Docking without docking: ISEARCH-prediction of interactions using known interfaces. Proteins 2007, 69:839-844.
    • (2007) Proteins , vol.69 , pp. 839-844
    • Gunther, S.1    May, P.2    Hoppe, A.3    Frommel, C.4    Preissner, R.5
  • 56
    • 33644876493 scopus 로고    scopus 로고
    • SCOPPI: a structural classification of protein-protein interfaces
    • Winter C., Henschel A., Kim W.K., Schroeder M. SCOPPI: a structural classification of protein-protein interfaces. Nucleic Acids Res 2006, 34:D310-D314.
    • (2006) Nucleic Acids Res , vol.34
    • Winter, C.1    Henschel, A.2    Kim, W.K.3    Schroeder, M.4
  • 57
    • 53749101674 scopus 로고    scopus 로고
    • Optimal contact map alignment of protein-protein interfaces
    • Pulim V., Berger B., Bienkowska J. Optimal contact map alignment of protein-protein interfaces. Bioinformatics 2008, 24:2324-2328.
    • (2008) Bioinformatics , vol.24 , pp. 2324-2328
    • Pulim, V.1    Berger, B.2    Bienkowska, J.3
  • 58
    • 84856940901 scopus 로고    scopus 로고
    • Protein docking by the interface structure similarity: how much structure is needed?
    • Sinha R., Kundrotas P.J., Vakser I.A. Protein docking by the interface structure similarity: how much structure is needed?. PLoS ONE 2012, 7:e93134.
    • (2012) PLoS ONE , vol.7
    • Sinha, R.1    Kundrotas, P.J.2    Vakser, I.A.3
  • 63
    • 80052903046 scopus 로고    scopus 로고
    • Accelerating protein docking in ZDOCK using an advanced 3D convolution library
    • Pierce B.G., Hourai Y., Weng Z. Accelerating protein docking in ZDOCK using an advanced 3D convolution library. PLoS ONE 2011, 6:e24657.
    • (2011) PLoS ONE , vol.6
    • Pierce, B.G.1    Hourai, Y.2    Weng, Z.3
  • 65
    • 84871967106 scopus 로고    scopus 로고
    • Interactome3D: adding structural details to protein networks
    • Mosca R., Ceol A., Aloy P. Interactome3D: adding structural details to protein networks. Nat Methods 2013, 10:47-53.
    • (2013) Nat Methods , vol.10 , pp. 47-53
    • Mosca, R.1    Ceol, A.2    Aloy, P.3
  • 68
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: a unified platform for automated protein structure and function prediction
    • Roy A., Kucukural A., Zhang Y. I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 2010, 5:725-738.
    • (2010) Nat Protoc , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 69
    • 0038817799 scopus 로고    scopus 로고
    • Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome
    • Lu L., Arakaki A.K., Lu H., Skolnick J. Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome. Genome Res 2003, 13:1146-1154.
    • (2003) Genome Res , vol.13 , pp. 1146-1154
    • Lu, L.1    Arakaki, A.K.2    Lu, H.3    Skolnick, J.4
  • 70
    • 84881115846 scopus 로고    scopus 로고
    • The structural network of inflammation and cancer: merits and challenges
    • Guven Maiorov E., Keskin O., Gursoy A., Nussinov R. The structural network of inflammation and cancer: merits and challenges. Semin Cancer Biol 2013, 23:243-251.
    • (2013) Semin Cancer Biol , vol.23 , pp. 243-251
    • Guven Maiorov, E.1    Keskin, O.2    Gursoy, A.3    Nussinov, R.4
  • 71
    • 33748453562 scopus 로고    scopus 로고
    • Predicting 3D structures of transient protein-protein complexes by homology
    • Kundrotas P.J., Alexov E. Predicting 3D structures of transient protein-protein complexes by homology. Biochim Biophys Acta 2006, 1764:1498-1511.
    • (2006) Biochim Biophys Acta , vol.1764 , pp. 1498-1511
    • Kundrotas, P.J.1    Alexov, E.2
  • 72
    • 84878599951 scopus 로고    scopus 로고
    • GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions
    • Kundrotas P.J., Zhu Z., Vakser I.A. GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions. Hum Genomics 2012, 6:7.
    • (2012) Hum Genomics , vol.6 , pp. 7
    • Kundrotas, P.J.1    Zhu, Z.2    Vakser, I.A.3
  • 74
    • 79956188502 scopus 로고    scopus 로고
    • Systematic computational prediction of protein interaction networks
    • Lees J.G., Heriche J.K., Morilla I., Ranea J.A., Orengo C.A. Systematic computational prediction of protein interaction networks. Phys Biol 2011, 8:035008.
    • (2011) Phys Biol , vol.8 , pp. 035008
    • Lees, J.G.1    Heriche, J.K.2    Morilla, I.3    Ranea, J.A.4    Orengo, C.A.5
  • 75
    • 77952305592 scopus 로고    scopus 로고
    • Large-scale prediction of protein-protein interactions from structures
    • Hue M., Riffle M., Vert J.P., Noble W.S. Large-scale prediction of protein-protein interactions from structures. BMC Bioinform 2010, 11:144.
    • (2010) BMC Bioinform , vol.11 , pp. 144
    • Hue, M.1    Riffle, M.2    Vert, J.P.3    Noble, W.S.4
  • 77
    • 0036580169 scopus 로고    scopus 로고
    • Protein interactions: two methods for assessment of the reliability of high throughput observations
    • Deane C.M., Salwinski L., Xenarios I., Eisenberg D. Protein interactions: two methods for assessment of the reliability of high throughput observations. Mol Cell Proteom 2002, 1:349-356.
    • (2002) Mol Cell Proteom , vol.1 , pp. 349-356
    • Deane, C.M.1    Salwinski, L.2    Xenarios, I.3    Eisenberg, D.4
  • 79
    • 84872394989 scopus 로고    scopus 로고
    • Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments
    • Trabuco L.G., Betts M.J., Russell R.B. Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments. Methods 2012, 58:343-348.
    • (2012) Methods , vol.58 , pp. 343-348
    • Trabuco, L.G.1    Betts, M.J.2    Russell, R.B.3
  • 80
    • 78651329116 scopus 로고    scopus 로고
    • KUPS: constructing datasets of interacting and non-interacting protein pairs with associated attributions
    • Chen X.W., Jeong J.C., Dermyer P. KUPS: constructing datasets of interacting and non-interacting protein pairs with associated attributions. Nucleic Acids Res 2011, 39:D750-D754.
    • (2011) Nucleic Acids Res , vol.39
    • Chen, X.W.1    Jeong, J.C.2    Dermyer, P.3
  • 81
    • 12844288890 scopus 로고    scopus 로고
    • The protein structure prediction problem could be solved using the current PDB library
    • Zhang Y., Skolnick J. The protein structure prediction problem could be solved using the current PDB library. Proc Natl Acad Sci U S A 2005, 102:1029-1034.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 1029-1034
    • Zhang, Y.1    Skolnick, J.2
  • 82
    • 84862276163 scopus 로고    scopus 로고
    • Further evidence for the likely completeness of the library of solved single domain protein structures
    • Skolnick J., Zhou H.Y., Brylinski M. Further evidence for the likely completeness of the library of solved single domain protein structures. J Phys Chem B 2012, 116:6654-6664.
    • (2012) J Phys Chem B , vol.116 , pp. 6654-6664
    • Skolnick, J.1    Zhou, H.Y.2    Brylinski, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.