-
1
-
-
0026664137
-
VDJ recombination
-
Alt, F. W. et al. VDJ recombination. Immunol. Today 13, 306-314 (1992).
-
(1992)
Immunol. Today
, vol.13
, pp. 306-314
-
-
Alt, F.W.1
-
2
-
-
0023720148
-
T-cell antigen receptor genes and T-cell recognition
-
Davis, M. M. & Bjorkman, P. J. T-cell antigen receptor genes and T-cell recognition. Nature 334, 395-402 (1988).
-
(1988)
Nature
, vol.334
, pp. 395-402
-
-
Davis, M.M.1
Bjorkman, P.J.2
-
3
-
-
79955554975
-
Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
-
Warren, R. L. et al. Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes. Genome Res. 21, 790-797 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 790-797
-
-
Warren, R.L.1
-
4
-
-
77950541195
-
Comprehensive assessment of T-cell receptor-chain diversity in T cells
-
Robins, H. S. et al. Comprehensive assessment of T-cell receptor-chain diversity in T cells. Blood 114, 4099-4107 (2009).
-
(2009)
Blood
, vol.114
, pp. 4099-4107
-
-
Robins, H.S.1
-
5
-
-
41149097574
-
Adoptive cell transfer: A clinical path to effective cancer immunotherapy
-
Rosenberg, S. A., Restifo, N. P., Yang, J. C., Morgan, R. A. & Dudley, M. E. Adoptive cell transfer: a clinical path to effective cancer immunotherapy. Nat. Rev. Cancer 8, 299-308 (2008).
-
(2008)
Nat. Rev. Cancer
, vol.8
, pp. 299-308
-
-
Rosenberg, S.A.1
Restifo, N.P.2
Yang, J.C.3
Morgan, R.A.4
Dudley, M.E.5
-
6
-
-
80054875641
-
Novel cancer immunotherapy agents with survival benefit: Recent successes and next steps
-
Sharma, P., Wagner, K., Wolchok, J. D. & Allison, J. P. Novel cancer immunotherapy agents with survival benefit: recent successes and next steps. Nat. Rev. Cancer 11, 805-812 (2011).
-
(2011)
Nat. Rev. Cancer
, vol.11
, pp. 805-812
-
-
Sharma, P.1
Wagner, K.2
Wolchok, J.D.3
Allison, J.P.4
-
7
-
-
84858766182
-
The blockade of immune checkpoints in cancer immunotherapy
-
Pardoll, D. M. The blockade of immune checkpoints in cancer immunotherapy. Nat. Rev. Cancer 12, 252-264 (2012).
-
(2012)
Nat. Rev. Cancer
, vol.12
, pp. 252-264
-
-
Pardoll, D.M.1
-
8
-
-
38149035080
-
Recognition of a ubiquitous self antigen by prostate cancer-infiltrating CD8+ T lymphocytes
-
Savage, P. A. et al. Recognition of a ubiquitous self antigen by prostate cancer-infiltrating CD8+ T lymphocytes. Science 319, 215-220 (2008).
-
(2008)
Science
, vol.319
, pp. 215-220
-
-
Savage, P.A.1
-
9
-
-
84926670819
-
Identification of human T-cell receptors with optimal affinity to cancer antigens using antigen-negative humanized mice
-
Obenaus, M. et al. Identification of human T-cell receptors with optimal affinity to cancer antigens using antigen-negative humanized mice. Nat. Biotechnol. 33, 402-407 (2015).
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 402-407
-
-
Obenaus, M.1
-
10
-
-
84920956732
-
PD-1 blockade induces responses by inhibiting adaptive immune resistance
-
Tumeh, P. C. et al. PD-1 blockade induces responses by inhibiting adaptive immune resistance. Nature 515, 568-571 (2014).
-
(2014)
Nature
, vol.515
, pp. 568-571
-
-
Tumeh, P.C.1
-
11
-
-
84926525215
-
Radiation and dual checkpoint blockade activate non-redundant immune mechanisms in cancer
-
Twyman-Saint Victor, C. et al. Radiation and dual checkpoint blockade activate non-redundant immune mechanisms in cancer. Nature 520, 373-377 (2015).
-
(2015)
Nature
, vol.520
, pp. 373-377
-
-
Twyman-Saint Victor, C.1
-
12
-
-
84929658167
-
Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia
-
Blachly, J. S. et al. Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia. Proc. Natl. Acad. Sci. USA 112, 4322-4327 (2015).
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. 4322-4327
-
-
Blachly, J.S.1
-
13
-
-
84948737706
-
Profiling tissue-resident T cell repertoires by RNA sequencing
-
Brown, S. D., Raeburn, L. A. & Holt, R. A. Profiling tissue-resident T cell repertoires by RNA sequencing. Genome Med. 7, 125 (2015).
-
(2015)
Genome Med.
, vol.7
, pp. 125
-
-
Brown, S.D.1
Raeburn, L.A.2
Holt, R.A.3
-
14
-
-
84883462993
-
MiTCR: Software for T-cell receptor sequencing data analysis
-
Bolotin, D. A. et al. MiTCR: software for T-cell receptor sequencing data analysis. Nat. Methods 10, 813-814 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 813-814
-
-
Bolotin, D.A.1
-
15
-
-
79960264362
-
Full-length transcriptome assembly from RNA-seq data without a reference genome
-
Grabherr, M. G. et al. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat. Biotechnol. 29, 644-652 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
-
16
-
-
60149109931
-
Profiling model T-cell metagenomes with short reads
-
Warren, R. L., Nelson, B. H. & Holt, R. A. Profiling model T-cell metagenomes with short reads. Bioinformatics 25, 458-464 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 458-464
-
-
Warren, R.L.1
Nelson, B.H.2
Holt, R.A.3
-
17
-
-
70349648171
-
Profiling the T-cell receptor-chain repertoire by massively parallel sequencing
-
Freeman, J. D., Warren, R. L., Webb, J. R., Nelson, B. H. & Holt, R. A. Profiling the T-cell receptor-chain repertoire by massively parallel sequencing. Genome Res. 19, 1817-1824 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 1817-1824
-
-
Freeman, J.D.1
Warren, R.L.2
Webb, J.R.3
Nelson, B.H.4
Holt, R.A.5
-
18
-
-
84875228084
-
Quantitative assessment of T cell repertoire recovery after hematopoietic stem cell transplantation
-
van Heijst, J. W. et al. Quantitative assessment of T cell repertoire recovery after hematopoietic stem cell transplantation. Nat. Med. 19, 372-377 (2013).
-
(2013)
Nat. Med.
, vol.19
, pp. 372-377
-
-
Van Heijst, J.W.1
-
19
-
-
84920962202
-
Molecular and genetic properties of tumors associated with local immune cytolytic activity
-
Rooney, M. S., Shukla, S. A., Wu, C. J., Getz, G. & Hacohen, N. Molecular and genetic properties of tumors associated with local immune cytolytic activity. Cell 160, 48-61 (2015).
-
(2015)
Cell
, vol.160
, pp. 48-61
-
-
Rooney, M.S.1
Shukla, S.A.2
Wu, C.J.3
Getz, G.4
Hacohen, N.5
-
20
-
-
0033730467
-
Antigen-recognition properties of murine T cells
-
Chien, Y. H. & Hampl, J. Antigen-recognition properties of murine T cells. Springer Semin. Immunopathol. 22, 239-250 (2000).
-
(2000)
Springer Semin. Immunopathol.
, vol.22
, pp. 239-250
-
-
Chien, Y.H.1
Hampl, J.2
-
21
-
-
2142738304
-
WebLogo: A sequence logo generator
-
Crooks, G. E., Hon, G., Chandonia, J. M. & Brenner, S. E. WebLogo: a sequence logo generator. Genome Res. 14, 1188-1190 (2004).
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
22
-
-
84947757122
-
Annotation of pseudogenic gene segments by massively parallel sequencing of rearranged lymphocyte receptor loci
-
Dean, J. et al. Annotation of pseudogenic gene segments by massively parallel sequencing of rearranged lymphocyte receptor loci. Genome Med. 7, 123 (2015).
-
(2015)
Genome Med.
, vol.7
, pp. 123
-
-
Dean, J.1
-
23
-
-
0028069388
-
CDR3 length in antigen-specific immune receptors
-
Rock, E. P., Sibbald, P. R., Davis, M. M. & Chien, Y. H. CDR3 length in antigen-specific immune receptors. J. Exp. Med. 179, 323-328 (1994).
-
(1994)
J. Exp. Med.
, vol.179
, pp. 323-328
-
-
Rock, E.P.1
Sibbald, P.R.2
Davis, M.M.3
Chien, Y.H.4
-
24
-
-
40049103901
-
The molecular basis for public T-cell responses?
-
Venturi, V., Price, D. A., Douek, D. C. & Davenport, M. P. The molecular basis for public T-cell responses? Nat. Rev. Immunol. 8, 231-238 (2008).
-
(2008)
Nat. Rev. Immunol.
, vol.8
, pp. 231-238
-
-
Venturi, V.1
Price, D.A.2
Douek, D.C.3
Davenport, M.P.4
-
25
-
-
84929659335
-
TCR contact residue hydrophobicity is a hallmark of immunogenic CD8+ T cell epitopes
-
Chowell, D. et al. TCR contact residue hydrophobicity is a hallmark of immunogenic CD8+ T cell epitopes. Proc. Natl. Acad. Sci. USA 112, E1754-E1762 (2015).
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. E1754-E1762
-
-
Chowell, D.1
-
26
-
-
0025034650
-
Effects of gender and sex steroids on the immune response
-
Schuurs, A. H. & Verheul, H. A. Effects of gender and sex steroids on the immune response. J. Steroid Biochem. 35, 157-172 (1990).
-
(1990)
J. Steroid Biochem.
, vol.35
, pp. 157-172
-
-
Schuurs, A.H.1
Verheul, H.A.2
-
27
-
-
84946565788
-
Comprehensive analysis of cancer-associated somatic mutations in class i HLA genes
-
Shukla, S. A. et al. Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes. Nat. Biotechnol. 33, 1152-1158 (2015).
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 1152-1158
-
-
Shukla, S.A.1
-
28
-
-
36949013036
-
Genome-wide detection of testis-and testicular cancer-specific alternative splicing
-
He, C. et al. Genome-wide detection of testis-and testicular cancer-specific alternative splicing. Carcinogenesis 28, 2484-2490 (2007).
-
(2007)
Carcinogenesis
, vol.28
, pp. 2484-2490
-
-
He, C.1
-
29
-
-
23144464171
-
Cancer/testis antigens, gametogenesis and cancer
-
Simpson, A. J., Caballero, O. L., Jungbluth, A., Chen, Y. T. & Old, L. J. Cancer/testis antigens, gametogenesis and cancer. Nat. Rev. Cancer 5, 615-625 (2005).
-
(2005)
Nat. Rev. Cancer
, vol.5
, pp. 615-625
-
-
Simpson, A.J.1
Caballero, O.L.2
Jungbluth, A.3
Chen, Y.T.4
Old, L.J.5
-
30
-
-
71049153709
-
Cancer/testis (CT) antigens: Potential targets for immunotherapy
-
Caballero, O. L. & Chen, Y. T. Cancer/testis (CT) antigens: potential targets for immunotherapy. Cancer Sci. 100, 2014-2021 (2009).
-
(2009)
Cancer Sci.
, vol.100
, pp. 2014-2021
-
-
Caballero, O.L.1
Chen, Y.T.2
-
31
-
-
84890980389
-
Breathing new life into immunotherapy: Review of melanoma, lung and kidney cancer
-
Drake, C. G., Lipson, E. J. & Brahmer, J. R. Breathing new life into immunotherapy: review of melanoma, lung and kidney cancer. Nat. Rev. Clin. Oncol. 11, 24-37 (2014).
-
(2014)
Nat. Rev. Clin. Oncol.
, vol.11
, pp. 24-37
-
-
Drake, C.G.1
Lipson, E.J.2
Brahmer, J.R.3
-
32
-
-
78650647189
-
Sperm-associated antigens as targets for cancer immunotherapy: Expression pattern and humoral immune response in cancer patients
-
Silina, K. et al. Sperm-associated antigens as targets for cancer immunotherapy: expression pattern and humoral immune response in cancer patients. J. Immunother. 34, 28-44 (2011).
-
(2011)
J. Immunother.
, vol.34
, pp. 28-44
-
-
Silina, K.1
-
33
-
-
80355136436
-
NNAlign: A web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data
-
Andreatta, M., Schafer-Nielsen, C., Lund, O., Buus, S. & Nielsen, M. NNAlign: a web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data. PLoS One 6, e26781 (2011).
-
(2011)
PLoS One
, vol.6
, pp. e26781
-
-
Andreatta, M.1
Schafer-Nielsen, C.2
Lund, O.3
Buus, S.4
Nielsen, M.5
-
34
-
-
0036852241
-
Cancer immunoediting: From immunosurveillance to tumor escape
-
Dunn, G. P., Bruce, A. T., Ikeda, H., Old, L. J. & Schreiber, R. D. Cancer immunoediting: from immunosurveillance to tumor escape. Nat. Immunol. 3, 991-998 (2002).
-
(2002)
Nat. Immunol.
, vol.3
, pp. 991-998
-
-
Dunn, G.P.1
Bruce, A.T.2
Ikeda, H.3
Old, L.J.4
Schreiber, R.D.5
-
35
-
-
84959881509
-
Gapped sequence alignment using artificial neural networks: Application to the MHC class i system
-
Andreatta, M. & Nielsen, M. Gapped sequence alignment using artificial neural networks: application to the MHC class I system. Bioinformatics 32, 511-517 (2016).
-
(2016)
Bioinformatics
, vol.32
, pp. 511-517
-
-
Andreatta, M.1
Nielsen, M.2
-
36
-
-
34547778364
-
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method
-
Nielsen, M., Lundegaard, C. & Lund, O. Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method. BMC Bioinformatics 8, 238 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 238
-
-
Nielsen, M.1
Lundegaard, C.2
Lund, O.3
-
37
-
-
84876325876
-
Chimeric antigen receptor-modified T cells for acute lymphoid leukemia
-
Grupp, S. A. et al. Chimeric antigen receptor-modified T cells for acute lymphoid leukemia. N. Engl. J. Med. 368, 1509-1518 (2013).
-
(2013)
N. Engl. J. Med.
, vol.368
, pp. 1509-1518
-
-
Grupp, S.A.1
-
38
-
-
80051720194
-
Chimeric antigen receptor-modified T cells in chronic lymphoid leukemia
-
Porter, D. L., Levine, B. L., Kalos, M., Bagg, A. & June, C. H. Chimeric antigen receptor-modified T cells in chronic lymphoid leukemia. N. Engl. J. Med. 365, 725-733 (2011).
-
(2011)
N. Engl. J. Med.
, vol.365
, pp. 725-733
-
-
Porter, D.L.1
Levine, B.L.2
Kalos, M.3
Bagg, A.4
June, C.H.5
-
39
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
Cancer Genome Atlas Research Network
-
Cancer Genome Atlas Research Network. Comprehensive molecular portraits of human breast tumours. Nature 490, 61-70 (2012).
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
-
40
-
-
84964313312
-
A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data
-
Li, B. & Li, J. Z. A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data. Genome Biol. 15, 473 (2014).
-
(2014)
Genome Biol.
, vol.15
, pp. 473
-
-
Li, B.1
Li, J.Z.2
-
41
-
-
78649345104
-
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery
-
Wang, K. et al. MapSplice: accurate mapping of RNA-seq reads for splice junction discovery. Nucleic Acids Res. 38, e178 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e178
-
-
Wang, K.1
-
42
-
-
79958059559
-
IMGT, the international immunogenetics information system
-
Lefranc, M. P. IMGT, the International ImMunoGeneTics Information System. Cold Spring Harb. Protoc. 2011, 595-603 (2011).
-
(2011)
Cold Spring Harb. Protoc.
, vol.2011
, pp. 595-603
-
-
Lefranc, M.P.1
-
43
-
-
59449108664
-
Does the cell number 10(9) still really fit one gram of tumor tissue?
-
Del Monte, U. Does the cell number 10(9) still really fit one gram of tumor tissue? Cell Cycle 8, 505-506 (2009).
-
(2009)
Cell Cycle
, vol.8
, pp. 505-506
-
-
Del Monte, U.1
-
44
-
-
84887167328
-
High-throughput sequencing of T-cell receptors reveals a homogeneous repertoire of tumour-infiltrating lymphocytes in ovarian cancer
-
Emerson, R. O. et al. High-throughput sequencing of T-cell receptors reveals a homogeneous repertoire of tumour-infiltrating lymphocytes in ovarian cancer. J. Pathol. 231, 433-440 (2013).
-
(2013)
J. Pathol.
, vol.231
, pp. 433-440
-
-
Emerson, R.O.1
|