Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

BMC Bioinformatics

Volumn 8, Issue , 2007, Pages

  Nielsen, Morten ^a   Lundegaard, Claus ^a   Lund, Ole ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURATE PREDICTION; ALIGNMENT METHODS; ANTIGEN PRESENTING CELLS; BINDING AFFINITIES; DIRECT PREDICTION; PREDICTION METHODS; PREDICTIVE PERFORMANCE; STABILIZATION MATRIX;

ALIGNMENT; AMINO ACIDS; BENCHMARKING; BINDING ENERGY; DNA SEQUENCES; EPITOPES; FORECASTING; GENES; MAMMALS; MOLECULES; STABILIZATION; SURFACE MOUNT TECHNOLOGY;

PEPTIDES;

AMINO ACID; EPITOPE; H2 ANTIGEN; HLA DR ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 2; HLA ANTIGEN CLASS 2; PEPTIDE;

AMINO TERMINAL SEQUENCE; ANTIGEN BINDING; ARTICLE; BINDING AFFINITY; BIOINFORMATICS; GENETIC DATABASE; HUMAN; HYDROPHOBICITY; INTERMETHOD COMPARISON; NONHUMAN; PREDICTIVE VALIDITY; PROTEIN DATABASE; PROTEIN MOTIF; PROTEIN STRUCTURE; VALIDATION PROCESS; ALGORITHM; ALLELE; AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; COMPARATIVE STUDY; IC 50; IMMUNOLOGY; METHODOLOGY; MONTE CARLO METHOD; MOUSE; PREDICTION AND FORECASTING; PROTEIN BINDING; REPRODUCIBILITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

ALGORITHMS; ALLELES; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; ANIMALS; DATABASES, GENETIC; EPITOPES; HISTOCOMPATIBILITY ANTIGENS CLASS II; HLA-DR ANTIGENS; HUMANS; INHIBITORY CONCENTRATION 50; MICE; MONTE CARLO METHOD; PEPTIDES; PREDICTIVE VALUE OF TESTS; PROTEIN BINDING; REPRODUCIBILITY OF RESULTS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN;

EID: 34547778364     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-238     Document Type: Article

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