-
1
-
-
84901358163
-
The placenta harbors a unique microbiome
-
Aagaard K., Ma J., Antony K.M., Ganu R., Petrosino J., Versalovic J. The placenta harbors a unique microbiome. Sci. Transl. Med. 2014, 6:237-265.
-
(2014)
Sci. Transl. Med.
, vol.6
, pp. 237-265
-
-
Aagaard, K.1
Ma, J.2
Antony, K.M.3
Ganu, R.4
Petrosino, J.5
Versalovic, J.6
-
2
-
-
84864037467
-
Metabolic reconstruction for metagenomic data and its application to the human microbiome
-
Abubucker S., Segata N., Goll J., Schubert A.M., Izard J., Cantarel B.L., Rodriguez-Mueller B., Zucker J., Thiagarajan M., Henrissat B., et al. Metabolic reconstruction for metagenomic data and its application to the human microbiome. PLoS Comput. Biol. 2012, 8.
-
(2012)
PLoS Comput. Biol.
, vol.8
-
-
Abubucker, S.1
Segata, N.2
Goll, J.3
Schubert, A.M.4
Izard, J.5
Cantarel, B.L.6
Rodriguez-Mueller, B.7
Zucker, J.8
Thiagarajan, M.9
Henrissat, B.10
-
3
-
-
84960483410
-
Microbiota studies in the bile duct strongly suggest a role for Helicobacter pylori in extrahepatic cholangiocarcinoma
-
Aviles-Jimenez F., Guitron A., Segura-Lopez F., Mendez-Tenorio A., Iwai S., Hernandez-Guerrero A., Torres J. Microbiota studies in the bile duct strongly suggest a role for Helicobacter pylori in extrahepatic cholangiocarcinoma. Clin. Microbiol. Infect. 2016, 22(178):e111-e122.
-
(2016)
Clin. Microbiol. Infect.
, vol.22
, Issue.178
, pp. e111-e122
-
-
Aviles-Jimenez, F.1
Guitron, A.2
Segura-Lopez, F.3
Mendez-Tenorio, A.4
Iwai, S.5
Hernandez-Guerrero, A.6
Torres, J.7
-
5
-
-
84896822967
-
Interplay of host microbiota, genetic perturbations, and inflammation promotes local development of intestinal neoplasms in mice
-
Bongers G., Pacer M.E., Geraldino T.H., Chen L., He Z., Hashimoto D., Furtado G.C., Ochando J., Kelley K.A., Clemente J.C., et al. Interplay of host microbiota, genetic perturbations, and inflammation promotes local development of intestinal neoplasms in mice. J. Exp. Med. 2014, 211:457-472.
-
(2014)
J. Exp. Med.
, vol.211
, pp. 457-472
-
-
Bongers, G.1
Pacer, M.E.2
Geraldino, T.H.3
Chen, L.4
He, Z.5
Hashimoto, D.6
Furtado, G.C.7
Ochando, J.8
Kelley, K.A.9
Clemente, J.C.10
-
6
-
-
84857051300
-
Helicobacter pylori in Thai patients with cholangiocarcinoma and its association with biliary inflammation and proliferation
-
Boonyanugomol W., Chomvarin C., Sripa B., Bhudhisawasdi V., Khuntikeo N., Hahnvajanawong C., Chamsuwan A. Helicobacter pylori in Thai patients with cholangiocarcinoma and its association with biliary inflammation and proliferation. HPB 2012, 14:177-184.
-
(2012)
HPB
, vol.14
, pp. 177-184
-
-
Boonyanugomol, W.1
Chomvarin, C.2
Sripa, B.3
Bhudhisawasdi, V.4
Khuntikeo, N.5
Hahnvajanawong, C.6
Chamsuwan, A.7
-
7
-
-
84874088535
-
Cholangiocarcinoma: epidemiology and risk factors
-
Bragazzi M.C., Cardinale V., Carpino G., Venere R., Semeraro R., Gentile R., Gaudio E., Alvaro D. Cholangiocarcinoma: epidemiology and risk factors. Transl. Gastrointest. Cancer 2012, 1:21-32.
-
(2012)
Transl. Gastrointest. Cancer
, vol.1
, pp. 21-32
-
-
Bragazzi, M.C.1
Cardinale, V.2
Carpino, G.3
Venere, R.4
Semeraro, R.5
Gentile, R.6
Gaudio, E.7
Alvaro, D.8
-
8
-
-
0024470068
-
Aerobic and anaerobic microbiology of biliary tract disease
-
Brook I. Aerobic and anaerobic microbiology of biliary tract disease. J. Clin. Microbiol. 1989, 27:2373-2375.
-
(1989)
J. Clin. Microbiol.
, vol.27
, pp. 2373-2375
-
-
Brook, I.1
-
9
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso J.G., Kuczynski J., Stombaugh J., Bittinger K., Bushman F.D., Costello E.K., Fierer N., Pena A.G., Goodrich J.K., Gordon J.I., et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 2010, 7:335-336.
-
(2010)
Nat. Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
-
10
-
-
0031749711
-
Bacterial and parasitic cholangitis
-
Carpenter H.A. Bacterial and parasitic cholangitis. Mayo Clin. Proc. 1998, 73:473-478.
-
(1998)
Mayo Clin. Proc.
, vol.73
, pp. 473-478
-
-
Carpenter, H.A.1
-
11
-
-
84888385562
-
Exome sequencing identifies distinct mutational patterns in liver fluke-related and non-infection-related bile duct cancers
-
Chan-On W., Nairismagi M.L., Ong C.K., Lim W.K., Dima S., Pairojkul C., Lim K.H., McPherson J.R., Cutcutache I., Heng H.L., et al. Exome sequencing identifies distinct mutational patterns in liver fluke-related and non-infection-related bile duct cancers. Nat. Genet. 2013, 45:1474-1478.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1474-1478
-
-
Chan-On, W.1
Nairismagi, M.L.2
Ong, C.K.3
Lim, W.K.4
Dima, S.5
Pairojkul, C.6
Lim, K.H.7
McPherson, J.R.8
Cutcutache, I.9
Heng, H.L.10
-
12
-
-
0035451350
-
The role of bile acids in carcinogenesis
-
Debruyne P.R., Bruyneel E.A., Li X., Zimber A., Gespach C., Mareel M.M. The role of bile acids in carcinogenesis. Mutat. Res. 2001, 480-481:359-369.
-
(2001)
Mutat. Res.
, vol.480-481
, pp. 359-369
-
-
Debruyne, P.R.1
Bruyneel, E.A.2
Li, X.3
Zimber, A.4
Gespach, C.5
Mareel, M.M.6
-
13
-
-
77957357555
-
The human oral microbiome
-
Dewhirst F.E., Chen T., Izard J., Paster B.J., Tanner A.C., Yu W.H., Lakshmanan A., Wade W.G. The human oral microbiome. J. Bacteriol. 2010, 192:5002-5017.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 5002-5017
-
-
Dewhirst, F.E.1
Chen, T.2
Izard, J.3
Paster, B.J.4
Tanner, A.C.5
Yu, W.H.6
Lakshmanan, A.7
Wade, W.G.8
-
14
-
-
0030807962
-
Pseudomonas monteilii sp. nov., isolated from clinical specimens
-
Elomari M., Coroler L., Verhille S., Izard D., Leclerc H. Pseudomonas monteilii sp. nov., isolated from clinical specimens. Int. J. Syst. Bacteriol. 1997, 47:846-852.
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 846-852
-
-
Elomari, M.1
Coroler, L.2
Verhille, S.3
Izard, D.4
Leclerc, H.5
-
15
-
-
80052874949
-
Molecular mechanisms of cholangiocarcinoma
-
Fava G. Molecular mechanisms of cholangiocarcinoma. World J. Gastrointest. Pathophysiol. 2010, 1:12-22.
-
(2010)
World J. Gastrointest. Pathophysiol.
, vol.1
, pp. 12-22
-
-
Fava, G.1
-
16
-
-
84875369840
-
An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice
-
Fei N., Zhao L. An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice. ISME J. 2013, 7:880-884.
-
(2013)
ISME J.
, vol.7
, pp. 880-884
-
-
Fei, N.1
Zhao, L.2
-
17
-
-
84861980130
-
Interactions between the microbiota and the immune system
-
Hooper L.V., Littman D.R., Macpherson A.J. Interactions between the microbiota and the immune system. Science 2012, 336:1268-1273.
-
(2012)
Science
, vol.336
, pp. 1268-1273
-
-
Hooper, L.V.1
Littman, D.R.2
Macpherson, A.J.3
-
18
-
-
84874064912
-
Identification of biliary bile acids in patients with benign biliary diseases, hepatocellular carcinoma and cholangiocarcinoma
-
Jusakul A., Khuntikeo N., Haigh W.G., Kuver R., Ioannou G.N., Loilome W., Namwat N., Bhudhisawasdi V., Pugkhem A., Pairojkul C., et al. Identification of biliary bile acids in patients with benign biliary diseases, hepatocellular carcinoma and cholangiocarcinoma. Asian Pac. J. Cancer Prev. 2012, 13(Suppl):77-82.
-
(2012)
Asian Pac. J. Cancer Prev.
, vol.13
, pp. 77-82
-
-
Jusakul, A.1
Khuntikeo, N.2
Haigh, W.G.3
Kuver, R.4
Ioannou, G.N.5
Loilome, W.6
Namwat, N.7
Bhudhisawasdi, V.8
Pugkhem, A.9
Pairojkul, C.10
-
19
-
-
79959201412
-
Human nutrition, the gut microbiome and the immune system
-
Kau A.L., Ahern P.P., Griffin N.W., Goodman A.L., Gordon J.I. Human nutrition, the gut microbiome and the immune system. Nature 2011, 474:327-336.
-
(2011)
Nature
, vol.474
, pp. 327-336
-
-
Kau, A.L.1
Ahern, P.P.2
Griffin, N.W.3
Goodman, A.L.4
Gordon, J.I.5
-
20
-
-
62149113232
-
The genus Dietzia: a new home for some known and emerging opportunist pathogens
-
Koerner R.J., Goodfellow M., Jones A.L. The genus Dietzia: a new home for some known and emerging opportunist pathogens. FEMS Immunol. Med. Microbiol. 2009, 55:296-305.
-
(2009)
FEMS Immunol. Med. Microbiol.
, vol.55
, pp. 296-305
-
-
Koerner, R.J.1
Goodfellow, M.2
Jones, A.L.3
-
21
-
-
84882354326
-
Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment
-
Kostic A.D., Chun E., Robertson L., Glickman J.N., Gallini C.A., Michaud M., Clancy T.E., Chung D.C., Lochhead P., Hold G.L., et al. Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment. Cell Host Microbe 2013, 14:207-215.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 207-215
-
-
Kostic, A.D.1
Chun, E.2
Robertson, L.3
Glickman, J.N.4
Gallini, C.A.5
Michaud, M.6
Clancy, T.E.7
Chung, D.C.8
Lochhead, P.9
Hold, G.L.10
-
22
-
-
84863022950
-
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
-
Kostic A.D., Gevers D., Pedamallu C.S., Michaud M., Duke F., Earl A.M., Ojesina A.I., Jung J., Bass A.J., Tabernero J., et al. Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Res. 2012, 22:292-298.
-
(2012)
Genome Res.
, vol.22
, pp. 292-298
-
-
Kostic, A.D.1
Gevers, D.2
Pedamallu, C.S.3
Michaud, M.4
Duke, F.5
Earl, A.M.6
Ojesina, A.I.7
Jung, J.8
Bass, A.J.9
Tabernero, J.10
-
23
-
-
84922941772
-
The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes
-
Kostic A.D., Gevers D., Siljander H., Vatanen T., Hyotylainen T., Hamalainen A.M., Peet A., Tillmann V., Poho P., Mattila I., et al. The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. Cell Host Microbe 2015, 17:260-273.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 260-273
-
-
Kostic, A.D.1
Gevers, D.2
Siljander, H.3
Vatanen, T.4
Hyotylainen, T.5
Hamalainen, A.M.6
Peet, A.7
Tillmann, V.8
Poho, P.9
Mattila, I.10
-
24
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille M.G., Zaneveld J., Caporaso J.G., McDonald D., Knights D., Reyes J.A., Clemente J.C., Burkepile D.E., Vega Thurber R.L., Knight R., et al. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat. Biotechnol. 2013, 31:814-821.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 814-821
-
-
Langille, M.G.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
Clemente, J.C.7
Burkepile, D.E.8
Vega Thurber, R.L.9
Knight, R.10
-
26
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H., Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 2009, 25:1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
27
-
-
84952705555
-
The characterization of novel tissue microbiota using an optimized 16S metagenomic sequencing pipeline
-
Lluch J., Servant F., Paisse S., Valle C., Valiere S., Kuchly C., Vilchez G., Donnadieu C., Courtney M., Burcelin R., et al. The characterization of novel tissue microbiota using an optimized 16S metagenomic sequencing pipeline. PLoS One 2015, 10.
-
(2015)
PLoS One
, vol.10
-
-
Lluch, J.1
Servant, F.2
Paisse, S.3
Valle, C.4
Valiere, S.5
Kuchly, C.6
Vilchez, G.7
Donnadieu, C.8
Courtney, M.9
Burcelin, R.10
-
28
-
-
84908608590
-
The gut microbiota, bacterial metabolites and colorectal cancer
-
Louis P., Hold G.L., Flint H.J. The gut microbiota, bacterial metabolites and colorectal cancer. Nat. Rev. Microbiol. 2014, 12:661-672.
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 661-672
-
-
Louis, P.1
Hold, G.L.2
Flint, H.J.3
-
29
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone C., Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 2005, 71:8228-8235.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8228-8235
-
-
Lozupone, C.1
Knight, R.2
-
30
-
-
0032878580
-
Distribution of bifidobacterial species in human intestinal microflora examined with 16S rRNA-gene-targeted species-specific primers
-
Matsuki T., Watanabe K., Tanaka R., Fukuda M., Oyaizu H. Distribution of bifidobacterial species in human intestinal microflora examined with 16S rRNA-gene-targeted species-specific primers. Appl. Environ. Microbiol. 1999, 65:4506-4512.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4506-4512
-
-
Matsuki, T.1
Watanabe, K.2
Tanaka, R.3
Fukuda, M.4
Oyaizu, H.5
-
31
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D., Price M.N., Goodrich J., Nawrocki E.P., DeSantis T.Z., Probst A., Andersen G.L., Knight R., Hugenholtz P. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 2012, 6:610-618.
-
(2012)
ISME J.
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
32
-
-
79956041561
-
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
-
Miller C.S., Baker B.J., Thomas B.C., Singer S.W., Banfield J.F. EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biol. 2011, 12:R44.
-
(2011)
Genome Biol.
, vol.12
, pp. R44
-
-
Miller, C.S.1
Baker, B.J.2
Thomas, B.C.3
Singer, S.W.4
Banfield, J.F.5
-
33
-
-
84870875221
-
Whole-genome reconstruction and mutational signatures in gastric cancer
-
Nagarajan N., Bertrand D., Hillmer A.M., Zang Z.J., Yao F., Jacques P.E., Teo A.S., Cutcutache I., Zhang Z., Lee W.H., et al. Whole-genome reconstruction and mutational signatures in gastric cancer. Genome Biol. 2012, 13:R115.
-
(2012)
Genome Biol.
, vol.13
, pp. R115
-
-
Nagarajan, N.1
Bertrand, D.2
Hillmer, A.M.3
Zang, Z.J.4
Yao, F.5
Jacques, P.E.6
Teo, A.S.7
Cutcutache, I.8
Zhang, Z.9
Lee, W.H.10
-
34
-
-
0032032527
-
Bile duct bacterial isolates in primary sclerosing cholangitis: a study of explanted livers
-
Olsson R., Bjornsson E., Backman L., Friman S., Hockerstedt K., Kaijser B., Olausson M. Bile duct bacterial isolates in primary sclerosing cholangitis: a study of explanted livers. J. Hepatol. 1998, 28:426-432.
-
(1998)
J. Hepatol.
, vol.28
, pp. 426-432
-
-
Olsson, R.1
Bjornsson, E.2
Backman, L.3
Friman, S.4
Hockerstedt, K.5
Kaijser, B.6
Olausson, M.7
-
35
-
-
84875988526
-
Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences
-
Ong S.H., Kukkillaya V.U., Wilm A., Lay C., Ho E.X., Low L., Hibberd M.L., Nagarajan N. Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences. PLoS One 2013, 8.
-
(2013)
PLoS One
, vol.8
-
-
Ong, S.H.1
Kukkillaya, V.U.2
Wilm, A.3
Lay, C.4
Ho, E.X.5
Low, L.6
Hibberd, M.L.7
Nagarajan, N.8
-
36
-
-
84861581233
-
Exome sequencing of liver fluke-associated cholangiocarcinoma
-
Ong C.K., Subimerb C., Pairojkul C., Wongkham S., Cutcutache I., Yu W., McPherson J.R., Allen G.E., Ng C.C., Wong B.H., et al. Exome sequencing of liver fluke-associated cholangiocarcinoma. Nat. Genet. 2012, 44:690-693.
-
(2012)
Nat. Genet.
, vol.44
, pp. 690-693
-
-
Ong, C.K.1
Subimerb, C.2
Pairojkul, C.3
Wongkham, S.4
Cutcutache, I.5
Yu, W.6
McPherson, J.R.7
Allen, G.E.8
Ng, C.C.9
Wong, B.H.10
-
37
-
-
84856468953
-
NGS QC Toolkit: a toolkit for quality control of next generation sequencing data
-
Patel R.K., Jain M. NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One 2012, 7.
-
(2012)
PLoS One
, vol.7
-
-
Patel, R.K.1
Jain, M.2
-
38
-
-
84900407041
-
A patient presenting with cholangitis due to Stenotrophomonas maltophilia and Pseudomonas aeruginosa successfully treated with intrabiliary colistine
-
Perez P.N., Ramirez M.A., Fernandez J.A., de Guevara L.L. A patient presenting with cholangitis due to Stenotrophomonas maltophilia and Pseudomonas aeruginosa successfully treated with intrabiliary colistine. Curr. Infect. Dis. Rep. 2014, 6:5147.
-
(2014)
Curr. Infect. Dis. Rep.
, vol.6
, pp. 5147
-
-
Perez, P.N.1
Ramirez, M.A.2
Fernandez, J.A.3
de Guevara, L.L.4
-
39
-
-
84887108782
-
Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome
-
Plieskatt J.L., Deenonpoe R., Mulvenna J.P., Krause L., Sripa B., Bethony J.M., Brindley P.J. Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome. FASEB J. 2013, 27:4572-4584.
-
(2013)
FASEB J.
, vol.27
, pp. 4572-4584
-
-
Plieskatt, J.L.1
Deenonpoe, R.2
Mulvenna, J.P.3
Krause, L.4
Sripa, B.5
Bethony, J.M.6
Brindley, P.J.7
-
40
-
-
77649175959
-
The effects of circumcision on the penis microbiome
-
Price L.B., Liu C.M., Johnson K.E., Aziz M., Lau M.K., Bowers J., Ravel J., Keim P.S., Serwadda D., Wawer M.J., et al. The effects of circumcision on the penis microbiome. PLoS One 2010, 5.
-
(2010)
PLoS One
, vol.5
-
-
Price, L.B.1
Liu, C.M.2
Johnson, K.E.3
Aziz, M.4
Lau, M.K.5
Bowers, J.6
Ravel, J.7
Keim, P.S.8
Serwadda, D.9
Wawer, M.J.10
-
41
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E., Quast C., Knittel K., Fuchs B.M., Ludwig W., Peplies J., Glockner F.O. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 2007, 35:7188-7196.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glockner, F.O.7
-
42
-
-
84867074831
-
A metagenome-wide association study of gut microbiota in type 2 diabetes
-
Qin J., Li Y., Cai Z., Li S., Zhu J., Zhang F., Liang S., Zhang W., Guan Y., Shen D., et al. A metagenome-wide association study of gut microbiota in type 2 diabetes. Nature 2012, 490:55-60.
-
(2012)
Nature
, vol.490
, pp. 55-60
-
-
Qin, J.1
Li, Y.2
Cai, Z.3
Li, S.4
Zhu, J.5
Zhang, F.6
Liang, S.7
Zhang, W.8
Guan, Y.9
Shen, D.10
-
44
-
-
84938849730
-
In vitro interaction of Stenotrophomonas maltophilia with human monocyte-derived dendritic cells
-
Roscetto E., Vitiello L., Muoio R., Soriano A.A., Iula V.D., Vollaro A., De Gregorio E., Catania M.R. In vitro interaction of Stenotrophomonas maltophilia with human monocyte-derived dendritic cells. Front. Microbiol. 2015, 6:723.
-
(2015)
Front. Microbiol.
, vol.6
, pp. 723
-
-
Roscetto, E.1
Vitiello, L.2
Muoio, R.3
Soriano, A.A.4
Iula, V.D.5
Vollaro, A.6
De Gregorio, E.7
Catania, M.R.8
-
46
-
-
84864440400
-
Metagenomic microbial community profiling using unique clade-specific marker genes
-
Segata N., Waldron L., Ballarini A., Narasimhan V., Jousson O., Huttenhower C. Metagenomic microbial community profiling using unique clade-specific marker genes. Nat. Methods 2012, 9:811-814.
-
(2012)
Nat. Methods
, vol.9
, pp. 811-814
-
-
Segata, N.1
Waldron, L.2
Ballarini, A.3
Narasimhan, V.4
Jousson, O.5
Huttenhower, C.6
-
47
-
-
84875244110
-
Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes
-
Sia D., Hoshida Y., Villanueva A., Roayaie S., Ferrer J., Tabak B., Peix J., Sole M., Tovar V., Alsinet C., et al. Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes. Gastroenterology 2013, 144:829-840.
-
(2013)
Gastroenterology
, vol.144
, pp. 829-840
-
-
Sia, D.1
Hoshida, Y.2
Villanueva, A.3
Roayaie, S.4
Ferrer, J.5
Tabak, B.6
Peix, J.7
Sole, M.8
Tovar, V.9
Alsinet, C.10
-
48
-
-
84948451779
-
Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy
-
Sivan A., Corrales L., Hubert N., Williams J.B., Aquino-Michaels K., Earley Z.M., Benyamin F.W., Lei Y.M., Jabri B., Alegre M.L., et al. Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy. Science 2015, 350:1084-1089.
-
(2015)
Science
, vol.350
, pp. 1084-1089
-
-
Sivan, A.1
Corrales, L.2
Hubert, N.3
Williams, J.B.4
Aquino-Michaels, K.5
Earley, Z.M.6
Benyamin, F.W.7
Lei, Y.M.8
Jabri, B.9
Alegre, M.L.10
-
49
-
-
79551571717
-
Microbial dysbiosis in colorectal cancer (CRC) patients
-
Sobhani I., Tap J., Roudot-Thoraval F., Roperch J.P., Letulle S., Langella P., Corthier G., Tran Van Nhieu J., Furet J.P. Microbial dysbiosis in colorectal cancer (CRC) patients. PLoS One 2011, 6.
-
(2011)
PLoS One
, vol.6
-
-
Sobhani, I.1
Tap, J.2
Roudot-Thoraval, F.3
Roperch, J.P.4
Letulle, S.5
Langella, P.6
Corthier, G.7
Tran Van Nhieu, J.8
Furet, J.P.9
-
50
-
-
0014345308
-
Identification of Pseudomonas species isolated from hospital environment and human sources
-
Sutter V.L. Identification of Pseudomonas species isolated from hospital environment and human sources. Appl. Microbiol. 1968, 16:1532-1538.
-
(1968)
Appl. Microbiol.
, vol.16
, pp. 1532-1538
-
-
Sutter, V.L.1
-
51
-
-
84861116448
-
Tumor microenvironment complexity: emerging roles in cancer therapy
-
Swartz M.A., Iida N., Roberts E.W., Sangaletti S., Wong M.H., Yull F.E., Coussens L.M., DeClerck Y.A. Tumor microenvironment complexity: emerging roles in cancer therapy. Cancer Res. 2012, 72:2473-2480.
-
(2012)
Cancer Res.
, vol.72
, pp. 2473-2480
-
-
Swartz, M.A.1
Iida, N.2
Roberts, E.W.3
Sangaletti, S.4
Wong, M.H.5
Yull, F.E.6
Coussens, L.M.7
DeClerck, Y.A.8
-
52
-
-
0026737916
-
Ammonia: a possible promotor in Helicobacter pylori-related gastric carcinogenesis
-
Tsujii M., Kawano S., Tsuji S., Nagano K., Ito T., Hayashi N., Fusamoto H., Kamada T., Tamura K. Ammonia: a possible promotor in Helicobacter pylori-related gastric carcinogenesis. Cancer Lett. 1992, 65:15-18.
-
(1992)
Cancer Lett.
, vol.65
, pp. 15-18
-
-
Tsujii, M.1
Kawano, S.2
Tsuji, S.3
Nagano, K.4
Ito, T.5
Hayashi, N.6
Fusamoto, H.7
Kamada, T.8
Tamura, K.9
-
53
-
-
79959572626
-
Risk factors for cholangiocarcinoma
-
Tyson G.L., El-Serag H.B. Risk factors for cholangiocarcinoma. Hepatology 2011, 54:173-184.
-
(2011)
Hepatology
, vol.54
, pp. 173-184
-
-
Tyson, G.L.1
El-Serag, H.B.2
-
54
-
-
84884777272
-
Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study
-
Wu T., Zhang Z., Liu B., Hou D., Liang Y., Zhang J., Shi P. Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study. BMC Genomics 2013, 14:669.
-
(2013)
BMC Genomics
, vol.14
, pp. 669
-
-
Wu, T.1
Zhang, Z.2
Liu, B.3
Hou, D.4
Liang, Y.5
Zhang, J.6
Shi, P.7
-
55
-
-
84906272014
-
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
-
Yarza P., Yilmaz P., Pruesse E., Glockner F.O., Ludwig W., Schleifer K.H., Whitman W.B., Euzeby J., Amann R., Rossello-Mora R. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nat. Rev. Microbiol. 2014, 12:635-645.
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 635-645
-
-
Yarza, P.1
Yilmaz, P.2
Pruesse, E.3
Glockner, F.O.4
Ludwig, W.5
Schleifer, K.H.6
Whitman, W.B.7
Euzeby, J.8
Amann, R.9
Rossello-Mora, R.10
-
56
-
-
84879888338
-
Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome
-
Yoshimoto S., Loo T.M., Atarashi K., Kanda H., Sato S., Oyadomari S., Iwakura Y., Oshima K., Morita H., Hattori M., et al. Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome. Nature 2013, 499:97-101.
-
(2013)
Nature
, vol.499
, pp. 97-101
-
-
Yoshimoto, S.1
Loo, T.M.2
Atarashi, K.3
Kanda, H.4
Sato, S.5
Oyadomari, S.6
Iwakura, Y.7
Oshima, K.8
Morita, H.9
Hattori, M.10
-
57
-
-
84904153902
-
The Opisthorchis viverrini genome provides insights into life in the bile duct
-
Young N.D., Nagarajan N., Lin S.J., Korhonen P.K., Jex A.R., Hall R.S., Safavi-Hemami H., Kaewkong W., Bertrand D., Gao S., et al. The Opisthorchis viverrini genome provides insights into life in the bile duct. Nat. Commun. 2014, 5:4378.
-
(2014)
Nat. Commun.
, vol.5
, pp. 4378
-
-
Young, N.D.1
Nagarajan, N.2
Lin, S.J.3
Korhonen, P.K.4
Jex, A.R.5
Hall, R.S.6
Safavi-Hemami, H.7
Kaewkong, W.8
Bertrand, D.9
Gao, S.10
-
58
-
-
27744480824
-
A similarity measure based on species proportions
-
Yue J.C., Clayton M.K. A similarity measure based on species proportions. Commun. Stat. Theory Methods 2005, 34:2123-2131.
-
(2005)
Commun. Stat. Theory Methods
, vol.34
, pp. 2123-2131
-
-
Yue, J.C.1
Clayton, M.K.2
-
59
-
-
84856087055
-
Glycine decarboxylase activity drives non-small cell lung cancer tumor-initiating cells and tumorigenesis
-
Zhang W.C., Shyh-Chang N., Yang H., Rai A., Umashankar S., Ma S., Soh B.S., Sun L.L., Tai B.C., Nga M.E., et al. Glycine decarboxylase activity drives non-small cell lung cancer tumor-initiating cells and tumorigenesis. Cell 2012, 148:259-272.
-
(2012)
Cell
, vol.148
, pp. 259-272
-
-
Zhang, W.C.1
Shyh-Chang, N.2
Yang, H.3
Rai, A.4
Umashankar, S.5
Ma, S.6
Soh, B.S.7
Sun, L.L.8
Tai, B.C.9
Nga, M.E.10
|