-
1
-
-
79955536138
-
The dynamic state of protein turnover: It's about time
-
May Available from: PMID: 21474317
-
Hinkson IV, Elias JE. The dynamic state of protein turnover: It's about time. Trends in cell biology. 2011 May; 21(5):293-303. Available from: http://www.ncbi.nlm.nih.gov/pubmed/21474317. doi: 10.1016/j. tcb.2011.02.002 PMID: 21474317
-
(2011)
Trends in cell biology
, vol.21
, Issue.5
, pp. 293-303
-
-
Hinkson, I.V.1
Elias, J.E.2
-
2
-
-
84892386470
-
Pulse-chase analysis to measure protein degradation
-
PMID: 24423267
-
Simon E, Kornitzer D. Pulse-chase analysis to measure protein degradation. Methods Enzymol. 2014; 536:65-75. doi: 10.1016/B978-0-12-420070-8.00006-4 PMID: 24423267
-
(2014)
Methods Enzymol
, vol.536
, pp. 65-75
-
-
Simon, E.1
Kornitzer, D.2
-
3
-
-
84915766632
-
Global proteome turnover analyses of the Yeasts S. Cerevisiae and S. Pombe
-
Dec PMID: 25466257
-
Christiano R, Nagaraj N, Fröhlich F, Walther TC. Global proteome turnover analyses of the Yeasts S. cerevisiae and S. pombe. Cell Rep. 2014 Dec; 9(5):1959-1965. doi: 10.1016/j.celrep.2014.10.065 PMID: 25466257
-
(2014)
Cell Rep
, vol.9
, Issue.5
, pp. 1959-1965
-
-
Christiano, R.1
Nagaraj, N.2
Fröhlich, F.3
Walther, T.C.4
-
4
-
-
84921759405
-
BONCAT: Metabolic labeling, click chemistry, and affinity purification of newly synthesized proteomes
-
PMID: 25560077
-
Landgraf P, Antileo ER, Schuman EM, Dieterich DC. BONCAT: metabolic labeling, click chemistry, and affinity purification of newly synthesized proteomes. Methods Mol Biol. 2015; 1266:199-215. doi: 10. 1007/978-1-4939-2272-7-14 PMID: 25560077
-
(2015)
Methods Mol Biol
, vol.1266
, Issue.199-215
-
-
Landgraf, P.1
Antileo, E.R.2
Schuman, E.M.3
Dieterich, D.C.4
-
5
-
-
84929129370
-
Multidimensional proteomics for cell biology
-
Apr Available from: PMID: 25857810
-
Larance M, Lamond AI. Multidimensional proteomics for cell biology. Nature Reviews Molecular Cell Biology. 2015 Apr; 16(5):269-280. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25857810. doi: 10.1038/nrm3970 PMID: 25857810
-
(2015)
Nature Reviews Molecular Cell Biology
, vol.16
, Issue.5
, pp. 269-280
-
-
Larance, M.1
Lamond, A.I.2
-
6
-
-
50649118115
-
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
-
Sep PMID: 18658122
-
Dölken L, Ruzsics Z, Rädle B, Friedel CC, Zimmer R, Mages J, et al. High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA. 2008 Sep; 14 (9):1959-1972. doi: 10.1261/rna.1136108 PMID: 18658122
-
(2008)
RNA
, vol.14
, Issue.9
, pp. 1959-1972
-
-
Dölken, L.1
Ruzsics, Z.2
Rädle, B.3
Friedel, C.C.4
Zimmer, R.5
Mages, J.6
-
7
-
-
84868252050
-
Genome-wide technology for determining RNA stability in mammalian cells: Historical perspective and recent advantages based on modified nucleotide labeling
-
Oct PMID: 23034600
-
Tani H, Akimitsu N. Genome-wide technology for determining RNA stability in mammalian cells: historical perspective and recent advantages based on modified nucleotide labeling. RNA Biol. 2012 Oct; 9 (10):1233-1238. doi: 10.4161/rna.22036 PMID: 23034600
-
(2012)
RNA Biol
, vol.9
, Issue.10
, pp. 1233-1238
-
-
Tani, H.1
Akimitsu, N.2
-
8
-
-
84873620982
-
Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA
-
PMID: 23408982
-
Deneke C, Lipowsky R, Valleriani A. Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA. PLoS One. 2013; 8(2):e55442. doi: 10. 1371/journal.pone.0055442 PMID: 23408982
-
(2013)
PLoS One
, vol.8
, Issue.2
, pp. e55442
-
-
Deneke, C.1
Lipowsky, R.2
Valleriani, A.3
-
9
-
-
0019218158
-
Kinetics of degradation of short-" and "long-livedproteins in cultured mammalian cells
-
PMID: 7460022
-
Wheatley DN, Giddings MR, Inglis MS. Kinetics of degradation of "short-" and "long-lived" proteins in cultured mammalian cells. Cell Biology International Reports. 1980; 4(12):1081-1090. doi: 10.1016/ 0309-1651(80)90045-4 PMID: 7460022
-
(1980)
Cell Biology International Reports
, vol.4
, Issue.12
, pp. 1081-1090
-
-
Wheatley, D.N.1
Giddings, M.R.2
Inglis, M.S.3
-
10
-
-
78751477191
-
Gene silencing by microRNAs: Contributions of translational repression and mRNA decay
-
PMID: 21245828
-
Huntzinger E, Izaurralde E. Gene silencing by microRNAs: Contributions of translational repression and mRNA decay. Nature Reviews Genetics. 2011; 12(2):99-110. doi: 10.1038/nrg2936 PMID: 21245828
-
(2011)
Nature Reviews Genetics
, vol.12
, Issue.2
, pp. 99-110
-
-
Huntzinger, E.1
Izaurralde, E.2
-
11
-
-
84864867339
-
Elucidating the temporal order of silencing
-
PMID: 22722480
-
Izaurralde E. Elucidating the temporal order of silencing. EMBO Reports. 2012; 13(8):662-663. doi: 10. 1038/embor.2012.91 PMID: 22722480
-
(2012)
EMBO Reports
, vol.13
, Issue.8
, pp. 662-663
-
-
Izaurralde, E.1
-
12
-
-
77957813967
-
Advances in protein turnover analysis at the global level and biological insights
-
PMID: 19757418
-
Li Q. Advances in protein turnover analysis at the global level and biological insights. Mass Spectrom Rev. 2010; 29(5):717-736. doi: 10.1002/mas.20261 PMID: 19757418
-
(2010)
Mass Spectrom Rev
, vol.29
, Issue.5
, pp. 717-736
-
-
Li, Q.1
-
13
-
-
84893519818
-
Polyubiquitin chain assembly and organization determine the dynamics of protein activation and degradation
-
PMID: 24478717
-
Nguyen LK, Dobrzyński M, Fey D, Kholodenko BN. Polyubiquitin chain assembly and organization determine the dynamics of protein activation and degradation. Front Physiol. 2014; 5:4. doi: 10.3389/ fphys.2014.00004 PMID: 24478717
-
(2014)
Front Physiol
, vol.5
, pp. 4
-
-
Nguyen, L.K.1
Dobrzyński, M.2
Fey, D.3
Kholodenko, B.N.4
-
14
-
-
84906701492
-
Networks of gene expression regulation in Trypanosoma brucei
-
Jul PMID: 24995711
-
Clayton CE. Networks of gene expression regulation in Trypanosoma brucei. Mol Biochem Parasitol. 2014 Jul; 195(2):96-106. doi: 10.1016/j.molbiopara.2014.06.005 PMID: 24995711
-
(2014)
Mol Biochem Parasitol
, vol.195
, Issue.2
, pp. 96-106
-
-
Clayton, C.E.1
-
15
-
-
84916606564
-
Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels
-
Oct PMID: 25145465
-
Fadda A, Ryten M, Droll D, Rojas F, Färber V, Haanstra JR, et al. Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels. Mol Microbiol. 2014 Oct; 94(2):307-326. doi: 10.1111/ mmi.12764 PMID: 25145465
-
(2014)
Mol Microbiol
, vol.94
, Issue.2
, pp. 307-326
-
-
Fadda, A.1
Ryten, M.2
Droll, D.3
Rojas, F.4
Färber, V.5
Haanstra, J.R.6
-
16
-
-
84899678173
-
The silicon trypanosome: A test case of iterative model extension in systems biology
-
PMID: 24797926
-
Achcar F, Fadda A, Haanstra JR, Kerkhoven EJ, Kim DH, Leroux AE, et al. The silicon trypanosome: a test case of iterative model extension in systems biology. Adv Microb Physiol. 2014; 64:115-143. doi: 10.1016/B978-0-12-800143-1.00003-8 PMID: 24797926
-
(2014)
Adv Microb Physiol
, vol.64
, pp. 115-143
-
-
Achcar, F.1
Fadda, A.2
Haanstra, J.R.3
Kerkhoven, E.J.4
Kim, D.H.5
Leroux, A.E.6
-
17
-
-
84882715121
-
Intrinsic noise of microRNA-regulated genes and the ceRNA hypothesis
-
PMID: 23991139
-
Noorbakhsh J, Lang AH, Mehta P. Intrinsic noise of microRNA-regulated genes and the ceRNA hypothesis. PLoS One. 2013; 8(8):e72676. doi: 10.1371/journal.pone.0072676 PMID: 23991139
-
(2013)
PLoS One
, vol.8
, Issue.8
, pp. e72676
-
-
Noorbakhsh, J.1
Lang, A.H.2
Mehta, P.3
-
19
-
-
84859957290
-
Transient phenomena in gene expression after induction of transcription
-
PMID: 22558114
-
Deneke C, Rudorf S, Valleriani A. Transient phenomena in gene expression after induction of transcription. PLoS One. 2012; 7(4):e35044. doi: 10.1371/journal.pone.0035044 PMID: 22558114
-
(2012)
PLoS One
, vol.7
, Issue.4
, pp. e35044
-
-
Deneke, C.1
Rudorf, S.2
Valleriani, A.3
-
20
-
-
84881488106
-
Effect of ribosome shielding on mRNA stability
-
Aug
-
Deneke C, Lipowsky R, Valleriani A. Effect of ribosome shielding on mRNA stability. Phys Biol. 2013 Aug; 10(4):46008. doi: 10.1088/1478-3975/10/4/046008
-
(2013)
Phys Biol
, vol.10
, Issue.4
, pp. 46008
-
-
Deneke, C.1
Lipowsky, R.2
Valleriani, A.3
-
21
-
-
84961576918
-
Single-molecule modeling of mRNA degradation by miRNA: Lessons from data
-
http://www.biomedcentral.com/content/pdf/1752-0509-9-S3-S2.pdf PMID:26050661
-
Sin C, Chiarugi D, Valleriani A. Single-molecule modeling of mRNA degradation by miRNA: Lessons from data. BMC Systems Biology. 2015; 9(Suppl 3):S2. Available from: http://www.biomedcentral.com/ 1752-0509/9/S3/S2 http://www.biomedcentral.com/content/pdf/1752-0509-9-S3-S2.pdf. doi: 10.1186/ 1752-0509-9-S3-S2 PMID: 26050661
-
(2015)
BMC Systems Biology
, vol.9
, pp. S2
-
-
Sin, C.1
Chiarugi, D.2
Valleriani, A.3
-
23
-
-
69249245933
-
Model selection and multimodel inference: A practical information-theoretic approach
-
Burnham KP, Anderson DR. Model selection and multimodel inference: a practical information-theoretic approach. Springer Science & Business Media; 2003.
-
(2003)
Springer Science and Business Media
-
-
Burnham, K.P.1
Anderson, D.R.2
-
24
-
-
0015501894
-
High Stability of Messenger RNA in growing Cultured Cells
-
PMID: 4564814
-
Greenberg JR. High Stability of Messenger RNA in growing Cultured Cells. Nature. 1972; 240:102-104. doi: 10.1038/240102a0 PMID: 4564814
-
(1972)
Nature
, vol.240
, pp. 102-104
-
-
Greenberg, J.R.1
-
25
-
-
84907199058
-
Determination of in vivo RNA kinetics using RATE-seq
-
PMID: 25161313
-
Neymotin B, Athanasiadou R, Gresham D. Determination of in vivo RNA kinetics using RATE-seq. RNA. 2014; 20:1645-1652. doi: 10.1261/rna.045104.114 PMID: 25161313
-
(2014)
RNA
, vol.20
, pp. 1645-1652
-
-
Neymotin, B.1
Athanasiadou, R.2
Gresham, D.3
-
26
-
-
84903441668
-
Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation
-
Jun PMID: 24945926
-
Schott J, Reitter S, Philipp J, Haneke K, Schäfer H, Stoecklin G. Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation. PLoS Genet. 2014 Jun; 10(6):e1004368. doi: 10.1371/journal.pgen.1004368 PMID: 24945926
-
(2014)
PLoS Genet
, vol.10
, Issue.6
, pp. e1004368
-
-
Schott, J.1
Reitter, S.2
Philipp, J.3
Haneke, K.4
Schäfer, H.5
Stoecklin, G.6
-
27
-
-
84904538283
-
Contributions of cell growth and biochemical reactions to nongenetic variability of cells
-
Jul PMID: 25028872
-
Schwabe A, Bruggeman FJ. Contributions of cell growth and biochemical reactions to nongenetic variability of cells. Biophys J. 2014 Jul; 107(2):301-313. doi: 10.1016/j.bpj.2014.05.004 PMID: 25028872
-
(2014)
Biophys J
, vol.107
, Issue.2
, pp. 301-313
-
-
Schwabe, A.1
Bruggeman, F.J.2
|