메뉴 건너뛰기




Volumn 11, Issue 5, 2016, Pages

Degradation parameters from pulse-chase experiments

Author keywords

[No Author keywords available]

Indexed keywords

DEGRADATION; EXTRACT; ALGORITHM; BIOLOGICAL MODEL; COMPUTER SIMULATION; GENETIC PROCEDURES; KINETICS; MARKOV CHAIN; METABOLISM; PROTEIN DEGRADATION; RNA STABILITY;

EID: 84969523593     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0155028     Document Type: Article
Times cited : (9)

References (27)
  • 1
    • 79955536138 scopus 로고    scopus 로고
    • The dynamic state of protein turnover: It's about time
    • May Available from: PMID: 21474317
    • Hinkson IV, Elias JE. The dynamic state of protein turnover: It's about time. Trends in cell biology. 2011 May; 21(5):293-303. Available from: http://www.ncbi.nlm.nih.gov/pubmed/21474317. doi: 10.1016/j. tcb.2011.02.002 PMID: 21474317
    • (2011) Trends in cell biology , vol.21 , Issue.5 , pp. 293-303
    • Hinkson, I.V.1    Elias, J.E.2
  • 2
    • 84892386470 scopus 로고    scopus 로고
    • Pulse-chase analysis to measure protein degradation
    • PMID: 24423267
    • Simon E, Kornitzer D. Pulse-chase analysis to measure protein degradation. Methods Enzymol. 2014; 536:65-75. doi: 10.1016/B978-0-12-420070-8.00006-4 PMID: 24423267
    • (2014) Methods Enzymol , vol.536 , pp. 65-75
    • Simon, E.1    Kornitzer, D.2
  • 3
    • 84915766632 scopus 로고    scopus 로고
    • Global proteome turnover analyses of the Yeasts S. Cerevisiae and S. Pombe
    • Dec PMID: 25466257
    • Christiano R, Nagaraj N, Fröhlich F, Walther TC. Global proteome turnover analyses of the Yeasts S. cerevisiae and S. pombe. Cell Rep. 2014 Dec; 9(5):1959-1965. doi: 10.1016/j.celrep.2014.10.065 PMID: 25466257
    • (2014) Cell Rep , vol.9 , Issue.5 , pp. 1959-1965
    • Christiano, R.1    Nagaraj, N.2    Fröhlich, F.3    Walther, T.C.4
  • 4
    • 84921759405 scopus 로고    scopus 로고
    • BONCAT: Metabolic labeling, click chemistry, and affinity purification of newly synthesized proteomes
    • PMID: 25560077
    • Landgraf P, Antileo ER, Schuman EM, Dieterich DC. BONCAT: metabolic labeling, click chemistry, and affinity purification of newly synthesized proteomes. Methods Mol Biol. 2015; 1266:199-215. doi: 10. 1007/978-1-4939-2272-7-14 PMID: 25560077
    • (2015) Methods Mol Biol , vol.1266 , Issue.199-215
    • Landgraf, P.1    Antileo, E.R.2    Schuman, E.M.3    Dieterich, D.C.4
  • 5
    • 84929129370 scopus 로고    scopus 로고
    • Multidimensional proteomics for cell biology
    • Apr Available from: PMID: 25857810
    • Larance M, Lamond AI. Multidimensional proteomics for cell biology. Nature Reviews Molecular Cell Biology. 2015 Apr; 16(5):269-280. Available from: http://www.ncbi.nlm.nih.gov/pubmed/25857810. doi: 10.1038/nrm3970 PMID: 25857810
    • (2015) Nature Reviews Molecular Cell Biology , vol.16 , Issue.5 , pp. 269-280
    • Larance, M.1    Lamond, A.I.2
  • 6
    • 50649118115 scopus 로고    scopus 로고
    • High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
    • Sep PMID: 18658122
    • Dölken L, Ruzsics Z, Rädle B, Friedel CC, Zimmer R, Mages J, et al. High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA. 2008 Sep; 14 (9):1959-1972. doi: 10.1261/rna.1136108 PMID: 18658122
    • (2008) RNA , vol.14 , Issue.9 , pp. 1959-1972
    • Dölken, L.1    Ruzsics, Z.2    Rädle, B.3    Friedel, C.C.4    Zimmer, R.5    Mages, J.6
  • 7
    • 84868252050 scopus 로고    scopus 로고
    • Genome-wide technology for determining RNA stability in mammalian cells: Historical perspective and recent advantages based on modified nucleotide labeling
    • Oct PMID: 23034600
    • Tani H, Akimitsu N. Genome-wide technology for determining RNA stability in mammalian cells: historical perspective and recent advantages based on modified nucleotide labeling. RNA Biol. 2012 Oct; 9 (10):1233-1238. doi: 10.4161/rna.22036 PMID: 23034600
    • (2012) RNA Biol , vol.9 , Issue.10 , pp. 1233-1238
    • Tani, H.1    Akimitsu, N.2
  • 8
    • 84873620982 scopus 로고    scopus 로고
    • Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA
    • PMID: 23408982
    • Deneke C, Lipowsky R, Valleriani A. Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA. PLoS One. 2013; 8(2):e55442. doi: 10. 1371/journal.pone.0055442 PMID: 23408982
    • (2013) PLoS One , vol.8 , Issue.2 , pp. e55442
    • Deneke, C.1    Lipowsky, R.2    Valleriani, A.3
  • 9
    • 0019218158 scopus 로고
    • Kinetics of degradation of short-" and "long-livedproteins in cultured mammalian cells
    • PMID: 7460022
    • Wheatley DN, Giddings MR, Inglis MS. Kinetics of degradation of "short-" and "long-lived" proteins in cultured mammalian cells. Cell Biology International Reports. 1980; 4(12):1081-1090. doi: 10.1016/ 0309-1651(80)90045-4 PMID: 7460022
    • (1980) Cell Biology International Reports , vol.4 , Issue.12 , pp. 1081-1090
    • Wheatley, D.N.1    Giddings, M.R.2    Inglis, M.S.3
  • 10
    • 78751477191 scopus 로고    scopus 로고
    • Gene silencing by microRNAs: Contributions of translational repression and mRNA decay
    • PMID: 21245828
    • Huntzinger E, Izaurralde E. Gene silencing by microRNAs: Contributions of translational repression and mRNA decay. Nature Reviews Genetics. 2011; 12(2):99-110. doi: 10.1038/nrg2936 PMID: 21245828
    • (2011) Nature Reviews Genetics , vol.12 , Issue.2 , pp. 99-110
    • Huntzinger, E.1    Izaurralde, E.2
  • 11
    • 84864867339 scopus 로고    scopus 로고
    • Elucidating the temporal order of silencing
    • PMID: 22722480
    • Izaurralde E. Elucidating the temporal order of silencing. EMBO Reports. 2012; 13(8):662-663. doi: 10. 1038/embor.2012.91 PMID: 22722480
    • (2012) EMBO Reports , vol.13 , Issue.8 , pp. 662-663
    • Izaurralde, E.1
  • 12
    • 77957813967 scopus 로고    scopus 로고
    • Advances in protein turnover analysis at the global level and biological insights
    • PMID: 19757418
    • Li Q. Advances in protein turnover analysis at the global level and biological insights. Mass Spectrom Rev. 2010; 29(5):717-736. doi: 10.1002/mas.20261 PMID: 19757418
    • (2010) Mass Spectrom Rev , vol.29 , Issue.5 , pp. 717-736
    • Li, Q.1
  • 13
    • 84893519818 scopus 로고    scopus 로고
    • Polyubiquitin chain assembly and organization determine the dynamics of protein activation and degradation
    • PMID: 24478717
    • Nguyen LK, Dobrzyński M, Fey D, Kholodenko BN. Polyubiquitin chain assembly and organization determine the dynamics of protein activation and degradation. Front Physiol. 2014; 5:4. doi: 10.3389/ fphys.2014.00004 PMID: 24478717
    • (2014) Front Physiol , vol.5 , pp. 4
    • Nguyen, L.K.1    Dobrzyński, M.2    Fey, D.3    Kholodenko, B.N.4
  • 14
    • 84906701492 scopus 로고    scopus 로고
    • Networks of gene expression regulation in Trypanosoma brucei
    • Jul PMID: 24995711
    • Clayton CE. Networks of gene expression regulation in Trypanosoma brucei. Mol Biochem Parasitol. 2014 Jul; 195(2):96-106. doi: 10.1016/j.molbiopara.2014.06.005 PMID: 24995711
    • (2014) Mol Biochem Parasitol , vol.195 , Issue.2 , pp. 96-106
    • Clayton, C.E.1
  • 15
    • 84916606564 scopus 로고    scopus 로고
    • Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels
    • Oct PMID: 25145465
    • Fadda A, Ryten M, Droll D, Rojas F, Färber V, Haanstra JR, et al. Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels. Mol Microbiol. 2014 Oct; 94(2):307-326. doi: 10.1111/ mmi.12764 PMID: 25145465
    • (2014) Mol Microbiol , vol.94 , Issue.2 , pp. 307-326
    • Fadda, A.1    Ryten, M.2    Droll, D.3    Rojas, F.4    Färber, V.5    Haanstra, J.R.6
  • 16
    • 84899678173 scopus 로고    scopus 로고
    • The silicon trypanosome: A test case of iterative model extension in systems biology
    • PMID: 24797926
    • Achcar F, Fadda A, Haanstra JR, Kerkhoven EJ, Kim DH, Leroux AE, et al. The silicon trypanosome: a test case of iterative model extension in systems biology. Adv Microb Physiol. 2014; 64:115-143. doi: 10.1016/B978-0-12-800143-1.00003-8 PMID: 24797926
    • (2014) Adv Microb Physiol , vol.64 , pp. 115-143
    • Achcar, F.1    Fadda, A.2    Haanstra, J.R.3    Kerkhoven, E.J.4    Kim, D.H.5    Leroux, A.E.6
  • 17
    • 84882715121 scopus 로고    scopus 로고
    • Intrinsic noise of microRNA-regulated genes and the ceRNA hypothesis
    • PMID: 23991139
    • Noorbakhsh J, Lang AH, Mehta P. Intrinsic noise of microRNA-regulated genes and the ceRNA hypothesis. PLoS One. 2013; 8(8):e72676. doi: 10.1371/journal.pone.0072676 PMID: 23991139
    • (2013) PLoS One , vol.8 , Issue.8 , pp. e72676
    • Noorbakhsh, J.1    Lang, A.H.2    Mehta, P.3
  • 19
    • 84859957290 scopus 로고    scopus 로고
    • Transient phenomena in gene expression after induction of transcription
    • PMID: 22558114
    • Deneke C, Rudorf S, Valleriani A. Transient phenomena in gene expression after induction of transcription. PLoS One. 2012; 7(4):e35044. doi: 10.1371/journal.pone.0035044 PMID: 22558114
    • (2012) PLoS One , vol.7 , Issue.4 , pp. e35044
    • Deneke, C.1    Rudorf, S.2    Valleriani, A.3
  • 20
    • 84881488106 scopus 로고    scopus 로고
    • Effect of ribosome shielding on mRNA stability
    • Aug
    • Deneke C, Lipowsky R, Valleriani A. Effect of ribosome shielding on mRNA stability. Phys Biol. 2013 Aug; 10(4):46008. doi: 10.1088/1478-3975/10/4/046008
    • (2013) Phys Biol , vol.10 , Issue.4 , pp. 46008
    • Deneke, C.1    Lipowsky, R.2    Valleriani, A.3
  • 21
    • 84961576918 scopus 로고    scopus 로고
    • Single-molecule modeling of mRNA degradation by miRNA: Lessons from data
    • http://www.biomedcentral.com/content/pdf/1752-0509-9-S3-S2.pdf PMID:26050661
    • Sin C, Chiarugi D, Valleriani A. Single-molecule modeling of mRNA degradation by miRNA: Lessons from data. BMC Systems Biology. 2015; 9(Suppl 3):S2. Available from: http://www.biomedcentral.com/ 1752-0509/9/S3/S2 http://www.biomedcentral.com/content/pdf/1752-0509-9-S3-S2.pdf. doi: 10.1186/ 1752-0509-9-S3-S2 PMID: 26050661
    • (2015) BMC Systems Biology , vol.9 , pp. S2
    • Sin, C.1    Chiarugi, D.2    Valleriani, A.3
  • 23
    • 69249245933 scopus 로고    scopus 로고
    • Model selection and multimodel inference: A practical information-theoretic approach
    • Burnham KP, Anderson DR. Model selection and multimodel inference: a practical information-theoretic approach. Springer Science & Business Media; 2003.
    • (2003) Springer Science and Business Media
    • Burnham, K.P.1    Anderson, D.R.2
  • 24
    • 0015501894 scopus 로고
    • High Stability of Messenger RNA in growing Cultured Cells
    • PMID: 4564814
    • Greenberg JR. High Stability of Messenger RNA in growing Cultured Cells. Nature. 1972; 240:102-104. doi: 10.1038/240102a0 PMID: 4564814
    • (1972) Nature , vol.240 , pp. 102-104
    • Greenberg, J.R.1
  • 25
    • 84907199058 scopus 로고    scopus 로고
    • Determination of in vivo RNA kinetics using RATE-seq
    • PMID: 25161313
    • Neymotin B, Athanasiadou R, Gresham D. Determination of in vivo RNA kinetics using RATE-seq. RNA. 2014; 20:1645-1652. doi: 10.1261/rna.045104.114 PMID: 25161313
    • (2014) RNA , vol.20 , pp. 1645-1652
    • Neymotin, B.1    Athanasiadou, R.2    Gresham, D.3
  • 26
    • 84903441668 scopus 로고    scopus 로고
    • Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation
    • Jun PMID: 24945926
    • Schott J, Reitter S, Philipp J, Haneke K, Schäfer H, Stoecklin G. Translational regulation of specific mRNAs controls feedback inhibition and survival during macrophage activation. PLoS Genet. 2014 Jun; 10(6):e1004368. doi: 10.1371/journal.pgen.1004368 PMID: 24945926
    • (2014) PLoS Genet , vol.10 , Issue.6 , pp. e1004368
    • Schott, J.1    Reitter, S.2    Philipp, J.3    Haneke, K.4    Schäfer, H.5    Stoecklin, G.6
  • 27
    • 84904538283 scopus 로고    scopus 로고
    • Contributions of cell growth and biochemical reactions to nongenetic variability of cells
    • Jul PMID: 25028872
    • Schwabe A, Bruggeman FJ. Contributions of cell growth and biochemical reactions to nongenetic variability of cells. Biophys J. 2014 Jul; 107(2):301-313. doi: 10.1016/j.bpj.2014.05.004 PMID: 25028872
    • (2014) Biophys J , vol.107 , Issue.2 , pp. 301-313
    • Schwabe, A.1    Bruggeman, F.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.