-
1
-
-
49349113285
-
Ribosome collisions and translation efficiency: Optimization by codon usage and mRNA destabilization
-
Mitarai N, Sneppen K, Pedersen S, (2008) Ribosome collisions and translation efficiency: Optimization by codon usage and mRNA destabilization. J Mol Biol 382: 236-245.
-
(2008)
J Mol Biol
, vol.382
, pp. 236-245
-
-
Mitarai, N.1
Sneppen, K.2
Pedersen, S.3
-
2
-
-
79051470889
-
Turnover of messenger RNA: Polysome statistics beyond the steady state
-
Valleriani A, Ignatova Z, Nagar A, Lipowsky R, (2010) Turnover of messenger RNA: Polysome statistics beyond the steady state. EPL 89.
-
(2010)
EPL
, vol.89
-
-
Valleriani, A.1
Ignatova, Z.2
Nagar, A.3
Lipowsky, R.4
-
3
-
-
82255191639
-
Translation by ribosomes with mRNA degradation: Exclusion processes on aging tracks
-
Nagar A, Valleriani A, Lipowsky R, (2011) Translation by ribosomes with mRNA degradation: Exclusion processes on aging tracks. J Stat Phys 145: 1385-1404.
-
(2011)
J Stat Phys
, vol.145
, pp. 1385-1404
-
-
Nagar, A.1
Valleriani, A.2
Lipowsky, R.3
-
4
-
-
64549100262
-
Generic Algorithm to Predict the Speed of Translational Elongation: Implications for Protein Biogenesis
-
Zhang G, Ignatova Z, (2009) Generic Algorithm to Predict the Speed of Translational Elongation: Implications for Protein Biogenesis. PLoS ONE 4.
-
(2009)
PLoS ONE
, vol.4
-
-
Zhang, G.1
Ignatova, Z.2
-
5
-
-
77955781203
-
Global and local depletion of ternary complex limits translational elongation
-
Zhang G, Fedyunin I, Miekley O, Valleriani A, Moura A, et al. (2010) Global and local depletion of ternary complex limits translational elongation. Nucleic Acids Res 38: 4778-4787.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 4778-4787
-
-
Zhang, G.1
Fedyunin, I.2
Miekley, O.3
Valleriani, A.4
Moura, A.5
-
6
-
-
81055155799
-
Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
-
Ingolia NT, Lareau LF, Weissman JS, (2011) Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes. Cell 147: 789-802.
-
(2011)
Cell
, vol.147
, pp. 789-802
-
-
Ingolia, N.T.1
Lareau, L.F.2
Weissman, J.S.3
-
7
-
-
79961048104
-
Length-dependent translation of messenger RNA by ribosomes
-
Valleriani A, Zhang G, Nagar A, Ignatova Z, Lipowsky R, (2011) Length-dependent translation of messenger RNA by ribosomes. Phys Rev E 83.
-
(2011)
Phys Rev E
, vol.83
-
-
Valleriani, A.1
Zhang, G.2
Nagar, A.3
Ignatova, Z.4
Lipowsky, R.5
-
8
-
-
80052466643
-
Stationary Size Distributions of Growing Cells with Binary and Multiple Cell Division
-
Rading M, Engel T, Lipowsky R, Valleriani A, (2011) Stationary Size Distributions of Growing Cells with Binary and Multiple Cell Division. J Stat Phys 145: 1-22.
-
(2011)
J Stat Phys
, vol.145
, pp. 1-22
-
-
Rading, M.1
Engel, T.2
Lipowsky, R.3
Valleriani, A.4
-
9
-
-
0029041568
-
Transcriptional Regulation of the Il-2 Gene
-
Jain J, Loh C, Rao A, (1995) Transcriptional Regulation of the Il-2 Gene. Curr Opin Immunol 7: 333-342.
-
(1995)
Curr Opin Immunol
, vol.7
, pp. 333-342
-
-
Jain, J.1
Loh, C.2
Rao, A.3
-
10
-
-
77953884287
-
All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay
-
Belasco JG, (2010) All things must pass: contrasts and commonalities in eukaryotic and bacterial mRNA decay. Nat Rev Mol Cell Biol 11: 467-478.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 467-478
-
-
Belasco, J.G.1
-
11
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN, (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99: 9697-9702.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
12
-
-
0037315564
-
Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation
-
Selinger DW, Saxena RM, Cheung KJ, Church GM, Rosenow C, (2003) Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation. Genome Res 13: 216-223.
-
(2003)
Genome Res
, vol.13
, pp. 216-223
-
-
Selinger, D.W.1
Saxena, R.M.2
Cheung, K.J.3
Church, G.M.4
Rosenow, C.5
-
13
-
-
77952311196
-
Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus
-
Steglich C, Lindell D, Futschik M, Rector T, Steen R, et al. (2010) Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus. Genome Biol 11.
-
(2010)
Genome Biol
, vol.11
-
-
Steglich, C.1
Lindell, D.2
Futschik, M.3
Rector, T.4
Steen, R.5
-
14
-
-
0017833657
-
A model for the statistical fluctuations of protein numbers in a microbial population
-
Berg OG, (1978) A model for the statistical fluctuations of protein numbers in a microbial population. J Theor Biol 71: 587-603.
-
(1978)
J Theor Biol
, vol.71
, pp. 587-603
-
-
Berg, O.G.1
-
15
-
-
0035902599
-
Intrinsic noise in gene regulatory networks
-
Thattai M, van Oudenaarden A, (2001) Intrinsic noise in gene regulatory networks. PNAS 98: 8614-8619.
-
(2001)
PNAS
, vol.98
, pp. 8614-8619
-
-
Thattai, M.1
van Oudenaarden, A.2
-
16
-
-
33750247101
-
Linking Stochastic Dynamics to Population Distribution: An Analytical Framework of Gene Expression
-
Friedman N, Cai L, Xie XS, (2006) Linking Stochastic Dynamics to Population Distribution: An Analytical Framework of Gene Expression. Phys Rev Lett 97: 168302.
-
(2006)
Phys Rev Lett
, vol.97
, pp. 168302
-
-
Friedman, N.1
Cai, L.2
Xie, X.S.3
-
17
-
-
50649118115
-
High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
-
Dölken L, Ruzsics Z, Rädle B, Friedel CC, Zimmer R, et al. (2008) High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14: 1959-1972.
-
(2008)
RNA
, vol.14
, pp. 1959-1972
-
-
Dölken, L.1
Ruzsics, Z.2
Rädle, B.3
Friedel, C.C.4
Zimmer, R.5
-
19
-
-
0037388094
-
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae
-
Arava Y, Wang YL, Storey JD, Liu CL, Brown PO, et al. (2003) Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 100: 3889-3894.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 3889-3894
-
-
Arava, Y.1
Wang, Y.L.2
Storey, J.D.3
Liu, C.L.4
Brown, P.O.5
-
20
-
-
0034651795
-
Compartmentalization of transcription and translation in Bacillus subtilis
-
Lewis PJ, Thaker SD, Errington J, (2000) Compartmentalization of transcription and translation in Bacillus subtilis. EMBO J 19: 710-718.
-
(2000)
EMBO J
, vol.19
, pp. 710-718
-
-
Lewis, P.J.1
Thaker, S.D.2
Errington, J.3
-
21
-
-
79952066011
-
Translation-Independent Localization of mRNA in E. coli
-
Nevo-Dinur K, Nussbaum-Shochat A, Ben-Yehuda S, Amster-Choder O, (2011) Translation-Independent Localization of mRNA in E. coli. Science 331: 1081-1084.
-
(2011)
Science
, vol.331
, pp. 1081-1084
-
-
Nevo-Dinur, K.1
Nussbaum-Shochat, A.2
Ben-Yehuda, S.3
Amster-Choder, O.4
-
22
-
-
0029026714
-
The Stability of Escherichia-Coli Lacz Messenger-Rna Depends Upon the Simultaneity of Its Synthesis and Translation
-
Iost I, Dreyfus M, (1995) The Stability of Escherichia-Coli Lacz Messenger-Rna Depends Upon the Simultaneity of Its Synthesis and Translation. EMBO J 14: 3252-3261.
-
(1995)
EMBO J
, vol.14
, pp. 3252-3261
-
-
Iost, I.1
Dreyfus, M.2
-
23
-
-
58249090246
-
The Native 3D Organization of Bacterial Polysomes
-
Brandt F, Etchells SA, Ortiz JO, Elcock AH, Hartl FU, et al. (2009) The Native 3D Organization of Bacterial Polysomes. Cell 136: 261-271.
-
(2009)
Cell
, vol.136
, pp. 261-271
-
-
Brandt, F.1
Etchells, S.A.2
Ortiz, J.O.3
Elcock, A.H.4
Hartl, F.U.5
-
24
-
-
62549134121
-
Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
-
Ingolia NT, Ghaemmaghami S, Newman JRS, Weissman JS, (2009) Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling. Science 324: 218-223.
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.S.3
Weissman, J.S.4
-
25
-
-
0024988991
-
Translation Initiation in Escherichia coli - old and new questions
-
Jacques N, Dreyfus M, (1990) Translation Initiation in Escherichia coli- old and new questions. Mol Microbiol 4: 1063-1067.
-
(1990)
Mol Microbiol
, vol.4
, pp. 1063-1067
-
-
Jacques, N.1
Dreyfus, M.2
-
26
-
-
0034075255
-
mRNA Composition and Control of Bacterial Gene Expression
-
Liang S, Xu Y, Dennis P, Bremer H, (2000) mRNA Composition and Control of Bacterial Gene Expression. J Bacteriol 182: 3037-3044.
-
(2000)
J Bacteriol
, vol.182
, pp. 3037-3044
-
-
Liang, S.1
Xu, Y.2
Dennis, P.3
Bremer, H.4
|