Aichi virus 1: Environmental occurrence and behavior

Pathogens

Volumn 4, Issue 2, 2015, Pages 256-268

  Kitajima, Masaaki ^a,b   Gerba, Charles P ^a  

^a UNIVERSITY OF ARIZONA   (United States)

^b SINGAPORE MIT ALLIANCE FOR RESEARCH AND TECHNOLOGY   (Singapore)

Author keywords

Aichivirus; Kobuvirus; Occurrence; qPCR; Surface waters; Wastewater treatment

Indexed keywords

GROUND WATER; RIVER WATER;

AICHI VIRUS; AICHI VIRUS 1; ANTIGENICITY; BEHAVIOR; DISEASE TRANSMISSION; ENTERIC VIRUS; ENVIRONMENTAL MONITORING; ENZYME LINKED IMMUNOSORBENT ASSAY; GASTROENTERITIS; GENETIC SIMILARITY; GENOME ANALYSIS; INTERNAL RIBOSOME ENTRY SITE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PREVALENCE; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; REVIEW; SEWAGE; SHELLFISH; VIRAL CONTAMINATION;

AICHI VIRUS; KOBUVIRUS; PICORNAVIRIDAE;

EID: 84969305011     PISSN: None     EISSN: 20760817     Source Type: Journal    
DOI: 10.3390/pathogens4020256     Document Type: Review

References (58)

1. Tapparel, C., Siegrist, F., Petty, T.J., Kaiser, L. Picornavirus and enterovirus diversity with associated human diseases. Infect. Genet. Evol. 2013, 14, 282-293.
2. Reuter, G., Boros, A., Pankovics, P. Kobuviruses—A comprehensive review. Rev. Med. Virol. 2011, 21, 32-41.
3. Adams, M.J., King, A.M.Q., Carstens, E.B. Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2013). Arch. Virol. 2013, 158, 2023-2030.
4. Yamashita, T., Kobayashi, S., Sakae, K., Nakata, S., Chiba, S., Ishihara, Y., Isomura, S. Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J. Infect. Dis. 1991, 164, 954-957.
5. Kapoor, A., Simmonds, P., Dubovi, E.J., Qaisar, N., Henriquez, J.A., Medina, J., Shields, S., Lipkin, W.I. Characterization of a canine homolog of human Aichivirus. J. Virol. 2011, 85, 11520-11525.
6. Phan, T.G., Kapusinszky, B., Wang, C., Rose, R.K., Lipton, H.L., Delwart, E.L. The fecal viral flora of wild rodents. PLoS Pathog. 2011, 7, e1002218.
7. Yamashita, T., Sakae, K., Tsuzuki, H., Suzuki, Y., Ishikawa, N., Takeda, N., Miyamura, T., Yamazaki, S. Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans. J. Virol. 1998, 72, 8408-8412.
8. Sasaki, J., Kusuhara, Y., Maeno, Y., Kobayashi, N., Yamashita, T., Sakae, K. Construction of an infectious cDNA clone of Aichi virus (a new member of the family Picornaviridae) and mutational analysis of a stem-loop structure at the 5ʹ end of the genome. J. Virol. 2001, 75, 8021-8030.
9. Yamashita, T., Sakae, K. Molecular biology and epidemiology of Aichi virus and other diarrhoeogenic enteroviruses. In Perspectives in Medical Virology; Desselberger, U., Gray, J., Eds., Elsevier: Amsterdam, The Netherlands, 2003; pp. 645-657.
10. Yamashita, T., Sugiyama, M., Tsuzuki, H., Sakae, K., Suzuki, Y., Miyazaki, Y. Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the Picornavirus family associated with gastroenteritis in humans. J. Clin. Microbiol. 2000, 38, 2955-2961.
11. Ambert-Balay, K., Lorrot, M., Bon, F., Giraudon, H., Kaplon, J., Wolfer, M., Lebon, P., Gendrel, D., Pothier, P. Prevalence and genetic diversity of Aichi virus strains in stool samples from community and hospitalized patients. J. Clin. Microbiol. 2008, 46, 1252-1258.
12. Pham, N.T.K., Khamrin, P., Nguyen, T.A., Kanti, D.S., Phan, T.G., Okitsu, S., Ushijima, H. Isolation and molecular characterization of Aichi viruses from fecal specimens collected in Japan, Bangladesh, Thailand, and Vietnam. J. Clin. Microbiol. 2007, 45, 2287-2288.
13. Pham, N.T.K., Trinh, Q.D., Khamrin, P., Nguyen, T.A., Dey, S.K., Phan, T.G., Hoang, L.P., Maneekarn, N., Okitsu, S., Mizuguchi, M., et al. Sequence analysis of the capsid gene of Aichi viruses detected from Japan, Bangladesh, Thailand, and Vietnam. J. Med. Virol. 2008, 1227, 1222-1227.
14. Yamashita, T., Sakae, K., Kobayashi, S., Ishihara, Y., Miyake, T., Mubina, A., Isomura, S. Isolation of cytopathic small round virus (Aichi virus) from Pakistani children and Japanese travelers from Southeast Asia. Microbiol. Immunol. 1995, 39, 433-435.
15. Yang, S., Zhang, W., Shen, Q., Yang, Z., Zhu, J., Cui, L., Hua, X. Aichi virus strains in children with gastroenteritis, China. Emerg. Infect. Dis. 2009, 15, 1703-1705.
16. Kaikkonen, S., Räsänen, S., Rämet, M. Aichi virus infection in children with acute gastroenteritis in Finland. Epidemiol. Infect. 2010, 138, 1166-1171.
17. Le Guyader, F.S., le Saux, J.-C., Ambert-Balay, K., Krol, J., Serais, O., Parnaudeau, S., Giraudon, H., Delmas, G., Pommepuy, M., Pothier, P., et al. Aichi virus, norovirus, astrovirus, enterovirus, and rotavirus involved in clinical cases from a French oyster-related gastroenteritis outbreak. J. Clin. Microbiol. 2008, 46, 4011-4017.
18. Oh, D.-Y., Silva, P.A., Hauroeder, B., Diedrich, S., Cardoso, D.D.P., Schreier, E. Molecular characterization of the first Aichi viruses isolated in Europe and in South America. Arch. Virol. 2006, 151, 1199-1206.
19. Reuter, G., Boldizsár, A., Papp, G., Pankovics, P. Detection of Aichi virus shedding in a child with enteric and extraintestinal symptoms in Hungary. Arch. Virol. 2009, 154, 1529-1532.
20. Räsänen, S., Lappalainen, S., Kaikkonen, S., Hämäläinen, M., Salminen, M., Vesikari, T. Mixed viral infections causing acute gastroenteritis in children in a waterborne outbreak. Epidemiol. Infect. 2010, 138, 1227-1234.
21. Sdiri-Loulizi, K., Gharbi-Khélifi, H., de Rougemont, A., Chouchane, S., Sakly, N., Ambert-Balay, K., Hassine, M., Guédiche, M.N., Aouni, M., Pothier, P. Acute Infantile Gastroenteritis Associated with Human Enteric Viruses in Tunisia. J. Clin. Microbiol. 2008, 46, 1349-1355.
22. Sdiri-Loulizi, K., Hassine, M., Gharbi-Khelifi, H., Sakly, N., Chouchane, S., Guediche, M.N., Pothier, P., Aouni, M., Ambert-Balay, K. Detection and Genomic Characterization of Aichi Viruses in Stool Samples from Children in Monastir, Tunisia. J. Clin. Microbiol. 2009, 47, 2275-2278.
23. Yamashita, T., Sakae, K., Ishihara, Y., Isomura, S., Utagawa, E. Prevalence of newly isolated, cytopathic small round virus (Aichi strain) in Japan. J. Clin. Microbiol. 1993, 31, 2938-2943.
24. Goyer, M., Aho, L.-S., Bour, J.-B., Ambert-Balay, K., Pothier, P. Seroprevalence distribution of Aichi virus among a French population in 2006-2007. Arch. Virol. 2008, 153, 1171-1174.
25. Ribes, J.M., Montava, R., Téllez-Castillo, C.J., Fernández-Jiménez, M., Buesa, J. Seroprevalence of Aichi Virus in a Spanish Population from 2007 to 2008. Clin. Vaccine Immunol. 2010, 17, 545-549.
26. Sdiri-Loulizi, K., Hassine, M., Bour, J.-B., Ambert-Balay, K., Mastouri, M., Aho, L.-S., Gharbi-Khelifi, H., Aouni, Z., Sakly, N., Chouchane, S., et al. Aichi virus IgG seroprevalence in Tunisia parallels genomic detection and clinical presentation in children with gastroenteritis. Clin. Vaccine Immunol. 2010, 17, 1111-1116.
27. Yamashita, T., Ito, M., Tsuzuki, H. Identification of Aichi virus infection by measurement of immunoglobulin responses in an enzyme-linked immunosorbent assay. J. Clin. Microbiol. 2001, 39, 4178-4180.
28. Pham, N.T.K., Trinh, Q.D., Nguyen, T.A., Dey, S.K., Phan, T.G., Hoang, L.P., Khamrin, P., Maneekarn, N., Okitsu, S., Mizuguchi, M., et al. Development of genotype-specific primers for differentiation of genotypes A and B of Aichi viruses. J. Virol. Methods 2009, 156, 107-110.
29. Verma, H., Chitambar, S.D., Gopalkrishna, V. Circulation of Aichi virus genotype B strains in children with acute gastroenteritis in India. Epidemiol. Infect. 2011, 139, 1687-1691.
30. Drexler, J.F., Baumgarte, S., de Souza Luna, L.K., Eschbach-Bludau, M., Lukashev, A.N., Drosten, C. Aichi virus shedding in high concentrations in patients with acute diarrhea. Emerg. Infect. Dis. 2011, 17, 1544-1548.
31. Kitajima, M., Haramoto, E., Phanuwan, C., Katayama, H. Prevalence and genetic diversity of Aichi viruses in wastewater and river water in Japan. Appl. Environ. Microbiol. 2011, 77, 2184-2187.
32. Lodder, W.J., Rutjes, S.A., Takumi, K., de Roda Husman, A.M. Aichi virus in sewage and surface water, the Netherlands. Emerg. Infect. Dis. 2013, 19, 1222-1230.
33. Lukashev, A.N., Drexler, J.F., Belalov, I.S., Eschbach-Bludau, M., Baumgarte, S., Drosten, C. Genetic variation and recombination in Aichi virus. J. Gen. Virol. 2012, 93, 1226-1235.
34. Nielsen, A.C.Y., Gyhrs, M.L., Nielsen, L.P., Pedersen, C., Böttiger, B. Gastroenteritis and the novel picornaviruses aichi virus, cosavirus, saffold virus, and salivirus in young children. J. Clin. Virol. 2013, 57, 239-242.
35. Kitajima, M., Hata, A., Yamashita, T., Haramoto, E., Minagawa, H., Katayama, H. Development of a reverse transcription-quantitative PCR system for detection and genotyping of Aichi viruses in clinical and environmental samples. Appl. Environ. Microbiol. 2013, 79, 3952-3958.
36. Hata, A., Katayama, H., Kojima, K., Sano, S., Kasuga, I., Kitajima, M., Furumai, H. Effects of rainfall events on the occurrence and detection efficiency of viruses in river water impacted by combined sewer overflows. Sci. Total Environ. 2014, 468, 757-763.
37. Hata, A., Katayama, H., Kitajima, M., Visvanathan, C., Nol, C., Furumai, H. Validation of internal controls for extraction and amplification of nucleic acids from enteric viruses in water samples. Appl. Environ. Microbiol. 2011, 77, 4336-4343.
38. Alcalá, A., Vizzi, E., Rodríguez-Díaz, J., Zambrano, J.L., Betancourt, W., Liprandi, F. Molecular detection and characterization of Aichi viruses in sewage-polluted waters of Venezuela. Appl. Environ. Microbiol. 2010, 76, 4113-4115.
39. Sdiri-Loulizi, K., Hassine, M., Aouni, Z., Gharbi-Khelifi, H., Sakly, N., Chouchane, S., Guédiche, M.N., Pothier, P., Aouni, M., Ambert-Balay, K. First molecular detection of Aichi virus in sewage and shellfish samples in the Monastir region of Tunisia. Arch. Virol. 2010, 155, 1509-1513.
40. Hansman, G.S., Oka, T., Li, T.-C., Nishio, O., Noda, M., Takeda, N. Detection of human enteric viruses in Japanese clams. J. Food Prot. 2008, 71, 1689-1695.
41. Sinclair, R.G., Choi, C.Y., Riley, M.R., Gerba, C.P. Pathogen surveillance through monitoring of sewer systems. Adv. Appl. Microbiol. 2008, 65, 249-269.
42. Yamashita, T., Adachi, H., Hirose, E., Nakamura, N., Ito, M., Yasui, Y., Kobayashi, S., Minagawa, H. Molecular detection and nucleotide sequence analysis of a new Aichi virus closely related to canine kobuvirus in sewage samples. J. Med. Microbiol. 2014, 63, 715-720.
43. Di Martino, B., di Profio, F., Ceci, C., di Felice, E., Marsilio, F. Molecular detection of Aichi virus in raw sewage in Italy. Arch. Virol. 2013, 158, 2001-2005.
44. Kitajima, M., Iker, B.C., Pepper, I.L., Gerba, C.P. Relative abundance and treatment reduction of viruses during wastewater treatment processes—Identification of potential viral indicators. Sci. Total Environ. 2014, 488-489, 290-296.
45. Cantalupo, P.G., Calgua, B., Zhao, G. Raw sewage harbors diverse viral populations. MBio 2011. 2, e00180-11.
46. Ng, T.F.F., Marine, R., Wang, C., Simmonds, P., Kapusinszky, B., Bodhidatta, L., Oderinde, B.S., Wommack, K.E., Delwart, E. High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage. J. Virol. 2012, 86, 12161-12175.
47. Prevost, B., Lucas, F.S., Goncalves, A., Richard, F., Moulin, L., Wurtzer, S. Large scale survey of enteric viruses in river and waste water underlines the health status of the local population. Environ. Int. 2015, 79, 42-50.
48. Rosario, K., Nilsson, C., Lim, Y.W., Ruan, Y., Breitbart, M. Metagenomic analysis of viruses in reclaimed water. Environ. Microbiol. 2009, 11, 2806-2820.
49. Bibby, K., Viau, E., Peccia, J. Viral metagenome analysis to guide human pathogen monitoring in environmental samples. Lett. Appl. Microbiol. 2011, 52, 386-392.
50. Bibby, K., Peccia, J. Identification of viral pathogen diversity in sewage sludge by metagenome analysis. Environ. Sci. Technol. 2013, 47, 1945-1951.
51. Vilariño, M.L., le Guyader, F.S., Polo, D., Schaeffer, J., Kröl, J., Romalde, J.L. Assessment of human enteric viruses in cultured and wild bivalve molluscs. Int. Microbiol. 2009, 12, 145-151.
52. Benabbes, L., Ollivier, J., Schaeffer, J., Parnaudeau, S., Rhaissi, H., Nourlil, J., le Guyader, F.S. Norovirus and other human enteric viruses in moroccan shellfish. Food Environ. Virol. 2013, 5, 35-40.
53. Betancourt, W.Q., Kitajima, M., Wing, A.D., Regnery, J., Drewes, J.E., Pepper, I.L., Gerba, C.P. Assessment of virus removal by managed aquifer recharge at three full-scale operations. J. Environ. Sci. Heal. Part A 2014, 49, 1685-1692.
54. Wei, J., Jin, Y., Sims, J.T., Kniel, K.E. Fate of human enteric viruses during dairy manure-based composting. J. Food Prot. 2010, 73, 1543-1547.
55. Kingsley, D.H., Chen, H., Hoover, D.G. Inactivation of selected picornaviruses by high hydrostatic pressure. Virus Res. 2004, 102, 221-224.
56. Kingsley, D.H., Li, X., Chen, H. Temperature effects for high-pressure processing of Picornaviruses. Food Environ. Virol. 2014, 6, 58-61.
57. Cromeans, T., Park, G.W., Costantini, V., Lee, D., Wang, Q., Farkas, T., Lee, A., Vinjé, J. Comprehensive comparison of cultivable norovirus surrogates in response to different inactivation and disinfection treatments. Appl. Environ. Microbiol. 2014, 80, 5743-5751.
58. U.S. Environmental Protection Agency. Federal Register; U.S. Environmental Protection Agency: Washington, DC, USA, 2009; pp. 51850-51862.