Molecular detection and characterization of aichi viruses in sewage-polluted waters of Venezuela

Applied and Environmental Microbiology

Volumn 76, Issue 12, 2010, Pages 4113-4115

  Alcalá, Ana ^a   Vizzi, Esmeralda ^a   Rodríguez Díaz, Jesús ^a   Zambrano, José L ^a   Betancourt, Walter ^b   Liprandi, Ferdinando ^a  

^a Instituto Venezolano de Investigaciones Cientificas Centro de Microbiologia y Biologia Celular   (Venezuela)

^b Lab de Genética Humana   (Venezuela)

Author keywords

[No Author keywords available]

Indexed keywords

CARACAS; GEOGRAPHICAL AREA; MOLECULAR DETECTION; PHYLOGENETIC ANALYSIS; POLLUTED WATER; SEWAGE DISCHARGES; SEWAGE WATER; URBAN AREAS; VENEZUELA; WATER SAMPLES;

SEWAGE; VIRUSES; WATER POLLUTION;

COMPUTER VIRUSES;

VIRUS RNA; SEWAGE;

FECES; GENOTYPE; MOLECULAR ANALYSIS; PATHOGENICITY; PHYLOGENETICS; RIVER DISCHARGE; RIVER POLLUTION; SAMPLE PREPARATION; SEWAGE; URBAN AREA; VIRUS;

ARTICLE; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; KOBUVIRUS; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY; SEWAGE; URBAN POPULATION; VENEZUELA; VIROLOGY;

CLUSTER ANALYSIS; GENOTYPE; KOBUVIRUS; MOLECULAR SEQUENCE DATA; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SEWAGE; URBAN POPULATION; VENEZUELA; WATER MICROBIOLOGY;

CARACAS; FEDERAL DISTRICT [VENEZUELA]; VENEZUELA;

AICHI VIRUS; KOBUVIRUS;

EID: 77953628756     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.00501-10     Document Type: Article

References (28)

1. Ambert-Balay, K., M. Lorrot, F. Bon, M. Giraudon, J. Kaplon, M. Wolfer, P. Lebon, D. Gendrel, and P. Pothier. 2008. Prevalence and genetic diversity of Aichi virus strains in stool samples from community and hospitalized patients. J. Clin. Microbiol. 46: 1252-1258.
2. Betancourt, W. Q., L. Querales, Y. F. Sulbaran, J. Rodriguez-Diaz, L. Carabailo, and F. H. Pujol. 2010. Molecular characterization of sewage-borne pathogens and detection of sewage markers in an urban stream in Caracas, Venezuela. Appl. Environ. Microbiol. 76: 2023-2026.
3. Blinkova, O., K. Rosario, L. Li, A. Kapoor, B. Slikas, F. Bernardin, M. Breitbart, and E. Delwart. 2009. Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the United States. J. Clin. Microbiol. 47: 3507-3513.
4. Braham, S., M. Iturriza-Gómara, and J. Gray. 2009. Detection of TT virus by single-primer sequence-independent amplification in multiple samples collected from an outbreak of gastroenteritis. Arch. Virol. 154: 981-985.
5. Drexler, J. F., K. Grywna, A. Stöcker, P. S. Almeida, T. C. Medrado-Ribeiro, M. Eschbach-Bludau, N. Petersen, H. da Costa-Ribeiro, Jr., and C. Drosten. 2009. Novel human parechovirus from Brazil. Emerg. Infect. Dis. 15: 310-313.
6. Reference deleted.
7. Goyer, M., L. S. Aho, J. B. Bour, K. Ambert-Balay, and P. Pothier. 2008. Seroprevalence distribution of Aichi virus among a French population in 2006-2007. Arch. Virol. 153: 1171-1174.
8. Hansman, G. S., T. Oka, T. C. Li, O. Nishio, M. Noda, and N. Takeda. 2008. Detection of human enteric viruses in Japanese clams. J. Food Prot. 71: 1689-1695.
9. Haramoto, E., M. Kitajima, H. Katayama, and S. Ohgaki. 2010. Real-time PCR detection of adenoviruses, polyomaviruses, and torque teno viruses in river water in Japan. Water Res. 44: 1747-1752.
10. Holtz, L., S. Finkbeiner, G. Zhao, C. Kirkwood, R. Girones, J. Pipas, and D. Wang. 2009. Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread. Virol. J. 6: 86.
11. Hurst, C., and P. Murphy. 1997. The transmission and prevention of infectious disease, p. 3-54. In C. J. Hurst (ed.), Modeling disease transmission and its prevention by disinfection, 1st ed. Cambridge University Press, New York, NY.
12. ICTVdB Management. 2006. 00.052.0.08. Kobuvirus. In C. Büchen-Osmond (ed.), ICTVdB - The Universal Virus Database, version 4. Columbia University, New York, NY. http://www.ncbi.nlm.nih.gov/ICTVdb/ICTVdB/.
13. Kaikkonen, S., S. Rasanen, M. Ramet, and T. Vesikari. 2009. Aichi virus infection in children with acute gastroenteritis in Finland. Epidemiol. Infect. 7: 1-6.
14. Khamrin, P., N. Maneekarn, A. Kongkaew, S. Kongkaew, S. Okitsu, and H. Ushtjima. 2009. Porcine kobuvirus in piglets, Thailand. Emerg. Infect. Dis. 15: 2075-2076.
15. Le Guyader, F. S., J. C. Le Saux, K. Ambert-Balay, J. Krol, O. Serais, S. Parnaudeau, H. Giraudon, G. Delmas, M. Pommepuy, P. Pothier, and R. L. Atmar. 2008. Aichi virus, norovirus, astrovirus, enterovirus, and rotavirus involved in clinical cases from a French oyster-related gastroenteritis outbreak. J. Clin. Microbiol. 46: 4011-4017.
16. Li, L., J. Victoria, A. Kapoor, O. Blinkova, C. Wang, F. Babrzadeh, C. J. Mason, P. Pandey, H. Triki, O. Bahri, B. S. Oderinde, M. M. Baba, D. N. Bukbuk, J. M. Besser, J. M. Bartkus, and E. L. Delwart. 2009. A novel Picornavirus associated with gastroenteritis. J. Virol. 83: 12002-12006.
17. Oh, D. Y., P. A. Silva, B. Hauroeder, S. Diedrich, D. D. Cardoso, and E. Schreier. 2006. Molecular characterization of the first Aichi viruses isolated in Europe and in South America. Arch. Virol. 151: 1199-1206.
18. Pham, N. T., Q. D. Trinh, P. Khamrin, T. A. Nguyen, S. K. Dey, T. G. Phan, P. Hoang le, N. Maneekarn, S. Okitsu, M. Mizuguchi, and H. Ushijima. 2008. Sequence analysis of the capsid gene of Aichi viruses detected from Japan, Bangladesh, Thailand, and Vietnam. J. Med. Virol. 80: 1222-1227.
19. Reuter, G., A. Boldizsár, and P. Pankovics. 2009. Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch. Virol. 154: 101-108.
20. Reuter, G., A. Boldizsár, G. Papp, and P. Pankovics. 2009. Detection of Aichi virus shedding in a child with enteric and extraintestinal symptoms in Hungary. Arch. Virol. 154: 1529-1532.
21. Roda-Husman, A. M., and J. Bartram. 2007. Global supply of virus-safe drinking water, p. 127-162. In A. Bosh (ed.), Human viruses in water, 1st ed. Elsevier, Amsterdam, Netherlands.
22. Rodríguez-Díaz, J., L. Caraballo, E. Vizzi, L. Querales, F. Liprandi, H. Takiff, and W. Betancourt. 2009. Detection and characterization of waterborne gastroenteritis viruses in urban sewage and sewage-polluted river waters in Caracas, Venezuela. Appl. Environ. Microbiol. 75: 387-394.
23. Sdiri-Loulizi, K., M. Hassine, H. Gharbi-Khelifi, N. Sakly, S. Chouchane, M. N. Guericke, P. Pothier, M. Aouni, and K. Ambert-Balay. 2009. Detection and genomic characterization of Aichi viruses in stool samples from children in Monastir, Tunisia. J. Clin. Microbiol. 47: 2275-2278.
24. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24: 1596-1599.
25. Yamashita, T., M. Sugiyama, H. Tsuzuki, K. Sakae, Y. Suzuki, and Y. Miyazaki. 2000. Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the Picornavirus family associated with gastroenteritis in humans. J. Clin. Microbiol. 38: 2955-2961.
26. Yamashita, T., K. Sakae, S. Kobayashi, Y. Ishihara, T. Miyake, A. Mubina, and S. Isomura. 1995. Isolation of cytopathic small round virus (Aichi virus) from Pakistani children and Japanese travelers from Southeast Asia. Microbiol. Immunol. 39: 433-435.
27. Yamashita, T., K. Sakae, Y. Ishihara, S. Isomura, and E. Utagawa. 1993. Prevalence of newly isolated, cytopathic small round virus (Aichi strain) in Japan. J. Clin. Microbiol. 31: 2938-2943.
28. Yamashita, T., S. Kobayashi, K. Sakae, S. Nakata, S. Chiba, Y. Ishihara, and S. Isomura. 1991. Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J. Infect. Dis. 164: 954-957.