Prevalence and genetic diversity of Aichi virus strains in stool samples from community and hospitalized patients

Journal of Clinical Microbiology

Volumn 46, Issue 4, 2008, Pages 1252-1258

  Ambert Balay, K ^a,c   Lorrot, M ^b   Bon, F ^a   Giraudon, H ^a   Kaplon, J ^a   Wolfer, M ^b   Lebon, P ^b   Gendrel, D ^b   Pothier, P ^a  

^a National Reference Centre for Enteric Viruses   (France)

^b HÔPITAL SAINT VINCENT DE PAUL   (France)

^c DIJON UNIVERSITY HOSPITAL   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN VP1; VIRUS PROTEIN;

ACUTE DIARRHEA; ADOLESCENT; ARTICLE; CHILD; CONTROLLED STUDY; FECES ANALYSIS; FEMALE; GASTROENTERITIS; GENETIC VARIABILITY; GENOTYPE; HOSPITAL PATIENT; HUMAN; INFANT; KOBUVIRUS; MAJOR CLINICAL STUDY; MALE; MIXED INFECTION; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS DETECTION; VIRUS STRAIN; ANIMAL; CLASSIFICATION; COMMUNICABLE DISEASE; CROSS INFECTION; DIARRHEA; DNA SEQUENCE; EPIDEMIC; FECES; FRANCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NEWBORN; OYSTER; PICORNAVIRUS INFECTION; PRESCHOOL CHILD; SEA FOOD; VIROLOGY;

AICHI VIRUS; OSTREIDAE;

ADOLESCENT; ANIMALS; CHILD; CHILD, PRESCHOOL; COMMUNITY-ACQUIRED INFECTIONS; CROSS INFECTION; DIARRHEA; DISEASE OUTBREAKS; FECES; FRANCE; GASTROENTERITIS; HUMANS; INFANT; INFANT, NEWBORN; KOBUVIRUS; MOLECULAR SEQUENCE DATA; OSTREIDAE; PHYLOGENY; PICORNAVIRIDAE INFECTIONS; PREVALENCE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEAFOOD; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

EID: 42449094602     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.02140-07     Document Type: Article

References (23)

1. Allard, A., B. Albinsson, and G. Wadell. 2001. Rapid typing of human adenoviruses by a general PCR combined with restriction endonuclease analysis. J. Clin. Microbiol. 39:498-505.
2. Chapman, N. M., S. Tracy, C. J. Gauntt, and U. Fortmueller. 1990. Molecular detection and identification of enteroviruses using enzymatic amplification and nucleic acid hybridization. J. Clin. Microbiol. 28:843-850.
3. Gentsch, J. R., R. I. Glass, P. Woods, V. Gouvea, M. Gorziglia, J. Flores, B. K. Das, and M. K. Bhan. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 30:1365-1373.
4. Glass, R. I., J. Bresee, B. Jiang, J. Gentsch, T. Ando, R. Fankhauser, J. Noel, U. Parashar, B. Rosen, and S. S. Monroe. 2001. Gastroenteritis virus: an overview. Novartis Found. Symp. 238:5-19.
5. Gouvea, V., R. I. Glass, P. Woods, K. Taniguchi, H. F. Clark, B. Forrester, and Z. Y. Fang. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J. Clin. Microbiol. 28:276-282.
6. Kojinia, S., T. Kageyama, S. Fukushi, F. B. Hoshino, M. Shinohara, K. Uchida, K. Natori, N. Takeda, and K. Katayama. 2002. Genogroup-specific PCR primers for detection of Norwalk-like viruses. J. Virol. Methods 100: 107-114.
7. Le Guyader, F., M. K. Estes, M. E. Hardy, F. H. Neill, J. Green, D. W. Brown, and R. L. Atmar. 1996. Evaluation of a degenerate primer for the PCR detection of human caliciviruses. Arch. Virol. 141:2225-2235.
8. Noel, J. S., T. W. Lee, J. B. Kurtz, R. I. Glass, and S. S. Monroe. 1995. Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J. Clin. Microbiol. 33:797-801.
9. Noel, J. S., B. L. Liu, C. D. Humphrey, E. M. Rodriguez, P. R. Lambden, I. N. Clarke, D. M. Dwyer, T. Ando, R. I. Glass, and S. S. Monroe. 1997. Parkville virus: a novel genetic variant of human calicivirus in the Sapporo virus clade, associated with an outbreak of gastroenteritis in adults. J. Med. Virol. 52:173-178.
10. Oberste, M. S., K. Maher, D. R. Kilpatrick, and M. A. Pallansch. 1999. Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to Picornavirus classification. J. Virol. 73:1941-1948.
11. Oh, D. Y., P. A. Silva, B. Hauroeder, S. Diedrich, D. D. Cardoso, and E. Schreier. 2006. Molecular characterization of the first Aichi viruses isolated in Europe and in South America. Arch. Virol. 151:1199-1206.
12. Pham, N. T., P. Khamrin, T. A. Nguyen, D. S. Kanti, T. G. Phan, S. Okitsu, and H. Ushijima. 2007. Isolation and molecular characterization of Aichi viruses from fecal specimens collected in Japan, Bangladesh, Thailand, and Vietnam. J. Clin. Microbiol. 45:2287-2288.
13. Pothier, P., and E. Drouet. 1987. Development and evaluation on a rapid one-step ELISA for rotavirus detection in stool specimens using monoclonal antibodies. Ann. Inst. Pasteur Virol. 13:285-295.
14. Pringle, C. R. 1999. Virus taxonomy at the XIth International Congress of Virology, Sydney, Australia, 1999. Arch. Virol. 144:2065- 2070.
15. Robertson, B. H., V. K. Brown, and B. Khanna. 1989. Altered hepatitis A VP1 protein resulting from cell culture propagation of virus. Virus Res. 13:207-212.
16. Sasaki, J., Y. Kusuhara, Y. Maeno, N. Kobayashi, T. Yamashita, K. Sakae, N. Takeda, and K. Taniguchi. 2001. Construction of an infectious cDNA clone of Aichi virus (a new member of the family Picornaviridae) and mutational analysis of a stem-loop structure at the 5′ end of the genome. J. Virol. 75:8021-8030.
17. Vinje, J., and M. P. Koopmans. 1996. Molecular detection and epidemiology of small round-structured viruses in outbreaks of gastroenteritis in The Netherlands. J. Infect. Dis. 174:610-615.
18. Yamashita, T., M. Ito, Y. Kabashima, H. Tsuzuki, A. Fujiura, and K. Sakae. 2003. Isolation and characterization of a new species of kobuvirus associated with cattle. J. Gen. Virol. 84:3069-3077.
19. Yamashita, T., S. Kobayashi, K. Sakae, S. Nakata, S. Chiba, Y. Ishihara, and S. Isomura. 1991. Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J. Infect. Dis. 164:954-957.
20. Yamashita, T., K. Sakae, Y. Ishihara, S. Isomura, and E. Utagawa. 1993. Prevalence of newly isolated, cytopathic small round virus (Aichi strain) in Japan. J. Clin. Microbiol. 31:2938-2943.
21. Yamashita, T., K. Sakae, S. Kobayashi, Y. Ishihara, T. Miyake, A. Mubina, and S. Isomura. 1995. Isolation of cytopathic small round virus (Aichi virus) from Pakistani children and Japanese travelers from Southeast Asia. Microbiol. Immunol. 39:433-435.
22. Yamashita, T., K. Sakae, H. Tsuzuki, Y. Suzuki, N. Ishikawa, N. Takeda, T. Miyamura, and S. Yamazaki. 1998. Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picomaviridae associated with acute gastroenteritis in humans. J. Virol. 72:8408-8412.
23. Yamashita, T., M. Sugiyama, H. Tsuzuki, K. Sakae, Y. Suzuki, and Y. Miyazaki. 2000. Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the Picornavirus family associated with gastroenteritis in humans. J. Clin. Microbiol. 38:2955-2961.