Characterization of a canine homolog of human Aichivirus

Journal of Virology

Volumn 85, Issue 21, 2011, Pages 11520-11525

  Kapoor, Amit ^a   Simmonds, Peter ^b   Dubovi, Edward J ^c   Qaisar, Natasha ^a   Henriquez, Jose A ^a   Medina, Jan ^a   Shields, Shelly ^d   Lipkin, W Ian ^a  

^a Och Spine at New York Presbyterian Hospitals   (United States)

^b UNIVERSITY OF EDINBURGH   (United Kingdom)

^c Department of Obstetrics Gynecology   (United States)

^d Pfizer Veterinary Medicine Research and Development   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

STRUCTURAL PROTEIN; VIRUS PROTEIN;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; AICHIVIRUS; AMINO ACID SEQUENCE; BAYES THEOREM; DIARRHEA; DOG; DOMESTICATION; FECES ANALYSIS; GENETIC VARIABILITY; KOBUVIRUS; MONTE CARLO METHOD; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; PHYLOGENY; PICORNAVIRUS; PRIORITY JOURNAL; PROBABILITY; SEQUENCE HOMOLOGY; VIRUS IDENTIFICATION;

3' UNTRANSLATED REGIONS; 5' UNTRANSLATED REGIONS; ANIMALS; CLUSTER ANALYSIS; DIARRHEA; DOG DISEASES; DOGS; FECES; GENOME, VIRAL; KOBUVIRUS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PICORNAVIRIDAE INFECTIONS; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

ANIMALIA; CANIS FAMILIARIS; KOBUVIRUS; MAMMALIA; PICORNAVIRIDAE;

EID: 80055107983     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.05317-11     Document Type: Note

References (31)

1. Albariño, C. G., et al. 2010. High diversity and ancient common ancestry of lymphocytic choriomeningitis virus. Emerg. Infect. Dis. 16:1093-1100.
2. Belyi, V. A., A. J. Levine, and A. M. Skalka. 2010. Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate genomes. PLoS Pathog. 6:e1001030.
3. Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
4. Drummond, A. J., A. Rambaut, B. Shapiro, and O. G. Pybus. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol. Biol. Evol. 22:1185-1192.
5. Epstein, J. H., et al. 2010. Identification of GBV-D, a novel GB-like flavivirus from Old World frugivorous bats (Pteropus giganteus) in Bangladesh. PLoS Pathog. 6:e1000972.
6. Greninger, A. L., et al. 2009. The complete genome of klassevirus-a novel picornavirus in pediatric stool. Virol. J. 6:82.
7. Hicks, A. L., and S. Duffy. 2011. Genus-specific substitution rate variability among picornaviruses. J. Virol. 85:7942-7947.
8. Ho, S. Y., M. J. Phillips, A. Cooper, and A. J. Drummond. 2005. Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol. Biol. Evol. 22:1561-1568.
9. Holtz, L. R., et al. 2009. Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread. Virol. J. 6:86.
10. Horie, M., et al. 2010. Endogenous non-retroviral RNA virus elements in mammalian genomes. Nature 463:84-87.
11. Jones, K. E., et al. 2008. Global trends in emerging infectious diseases. Nature 451:990-993.
12. Kapoor, A., et al. 2011. Characterization of a canine homolog of hepatitis C virus. Proc. Natl. Acad. Sci. U. S. A. 108:11608-11613.
13. Kapoor, A., P. Simmonds, and W. I. Lipkin. 2010. Discovery and characterization of mammalian endogenous parvoviruses. J. Virol. 84:12628-12635.
14. Kapoor, A., P. Simmonds, W. I. Lipkin, S. Zaidi, and E. Delwart. 2010. Use of nucleotide composition analysis to infer hosts for three novel picorna-like viruses. J. Virol. 84:10322-10328.
15. Kapoor, A., et al. 2008. A highly prevalent and genetically diversified Picornaviridae genus in South Asian children. Proc. Natl. Acad. Sci. U. S. A. 105:20482-20487.
16. Katzourakis, A., and R. J. Gifford. 2010. Endogenous viral elements in animal genomes. PLoS Genet. 6:e1001191.
17. Lemey, P., A. Rambaut, A. J. Drummond, and M. A. Suchard. 2009. Bayesian phylogeography finds its roots. PLoS Comput. Biol. 5:e1000520.
18. Lewis-Rogers, N., and K. A. Crandall. 2010. Evolution of Picornaviridae: an examination of phylogenetic relationships and cophylogeny. Mol. Phylogenet. Evol. 54:995-1005.
19. Li, L., et al. 2009. A novel picornavirus associated with gastroenteritis. J. Virol. 83:12002-12006.
20. Park, S. J., H. K. Kim, D. S. Song, H. J. Moon, and B. K. Park. 2011. Molecular detection and genetic characterization of kobuviruses in fecal samples collected from diarrheic cattle in Korea. Infect. Genet. Evol. 11: 1178-1182.
21. Parrish, C. R., et al. 2008. Cross-species virus transmission and the emergence of new epidemic diseases. Microbiol. Mol. Biol. Rev. 72:457-470.
22. Parrish, C. R., and Y. Kawaoka. 2005. The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses. Annu. Rev. Microbiol. 59:553-586.
23. Reuter, G., A. Boldizsar, I. Kiss, and P. Pankovics. 2008. Candidate new species of Kobuvirus in porcine hosts. Emerg. Infect. Dis. 14:1968-1970.
24. Reuter, G., A. Boldizsar, and P. Pankovics. 2009. Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch. Virol. 154:101-108.
25. Reuter, G., A. Boros, and P. Pankovics. 2011. Kobuviruses-a comprehensive review. Rev. Med. Virol. 21:32-41.
26. Sasaki, J., et al. 2001. Construction of an infectious cDNA clone of Aichi virus (a new member of the family Picornaviridae) and mutational analysis of a stem-loop structure at the 5' end of the genome. J. Virol. 75:8021-8030.
27. Simmonds, P. 2006. Recombination and selection in the evolution of picornaviruses and other mammalian positive-stranded RNA viruses. J. Virol. 80:11124-11140.
28. Tamura, K., et al. 4 May 2011, posting date. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. [Epub ahead of print.] doi: 10.1093/molbev/msr121.
29. Woo, P. C., et al. 2010. Comparative analysis of six genome sequences of three novel picornaviruses, turdiviruses 1, 2 and 3, in dead wild birds, and proposal of two novel genera, Orthoturdivirus and Paraturdivirus, in the family Picornaviridae. J. Gen. Virol. 91:2433-2448.
30. Yamashita, T., et al. 2003. Isolation and characterization of a new species of kobuvirus associated with cattle. J. Gen. Virol. 84:3069-3077.
31. Yamashita, T., et al. 1998. Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans. J. Virol. 72:8408-8412.