Development of genotype-specific primers for differentiation of genotypes A and B of Aichi viruses

Journal of Virological Methods

Volumn 156, Issue 1-2, 2009, Pages 107-110

  Pham, Ngan Thi Kim ^a   Trinh, Quang Duy ^a   Nguyen, Tuan Anh ^a   Dey, Shuvra Kanti ^a   Phan, Tung Gia ^a   Hoang, Le Phuc ^b   Khamrin, Pattara ^c   Maneekarn, Niwat ^d   Okitsu, Shoko ^c   Mizuguchi, Masashi ^a   Ushijima, Hiroshi ^c  

^a GRADUATE SCHOOL OF MEDICINE   (Japan)

^b Children's Hospital No 1   (Viet Nam)

^c AINO UNIVERSITY   (Japan)

^d Faculty of Medicine Chiang Mai University   (Thailand)

Author keywords

Aichi virus; Genotype specific primers; Genotyping

Indexed keywords

ARTICLE; CONTROLLED STUDY; DIFFERENTIATION; GENOTYPE; KOBUVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; VIRUS CAPSID; VIRUS GENE; VIRUS IDENTIFICATION;

CAPSID PROTEINS; DNA PRIMERS; GENOME, VIRAL; GENOTYPE; KOBUVIRUS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

AICHI VIRUS; MIRIDAE;

EID: 59749093977     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2008.11.005     Document Type: Article

References (16)

1. Ambert-Balay K., Lorrot M., Bon F., Giraudon H., Kaplon J., Wolfer M., Lebon P., Gendrel D., and Pothier P. Prevalence and genetic diversity of Aichi virus strains in stool samples from community and hospitalized patients. J. Clin. Microbiol. 46 (2008) 1252-1258
2. Dey S.K., Nguyen T.A., Phan T.G., Nishio O., Salim A.F., Rahman M., Yagyu F., Okitsu S., and Ushijima H. Molecular and epidemiological trend of norovirus associated gastroenteritis in Dhaka City, Bangladesh. J. Clin. Virol. 40 (2007) 218-223
3. Khamrin P., Peerakome S., Wongsawasdi L., Tonusin S., Sornchai P., Maneerat V., Khamwan C., Yagyu F., Okitsu S., Ushijima H., and Maneekarn N. Emergence of human G9 rotavirus with an exceptionally high frequency in children admitted to hospital with diarrhea in Chiang Mai, Thailand. J. Med. Virol. 78 (2006) 273-280
4. Nguyen T.A., Yagyu F., Okame M., Phan T.G., Trinh Q.D., Yan H., Hoang K.T., Cao A.T., Le Hoang P., Okitsu S., and Ushijima H. Diversity of viruses associated with acute gastroenteritis in children hospitalized with diarrhea in Ho Chi Minh City, Vietnam. J. Med. Virol. 79 (2007) 582-590
5. Oh D.Y., Silva P.A., Hauroeder B., Diedrich S., Cardoso D.D., and Schreier E. Molecular characterization of the first Aichi viruses isolated in Europe and in South America. Arch. Virol. 151 (2006) 1199-1206
6. Pham N.T., Khamrin P., Nguyen T.A., Kanti D.S., Phan T.G., Okitsu S., and Ushijima H. Isolation and molecular characterization of Aichi viruses from fecal specimens collected in Japan, Bangladesh, Thailand, and Vietnam. J. Clin. Microbiol. 45 (2007) 2287-2288
7. Pham N.T., Trinh Q.D., Khamrin P., Nguyen T.A., Dey S.K., Phan T.G., Hoang le P., Maneekarn N., Okitsu S., Mizuguchi M., and Ushijima H. Sequence analysis of the capsid gene of Aichi viruses detected from Japan, Bangladesh, Thailand, and Vietnam. J. Med. Virol. 80 (2008) 1222-1227
8. Phan T.G., Nguyen T.A., Kuroiwa T., Kaneshi K., Ueda Y., Nakaya S., Nishimura S., Nishimura T., Yamamoto A., Okitsu S., and Ushijima H. Viral diarrhea in Japanese children: results from a one-year epidemiologic study. Clin. Lab. 51 (2005) 183-191
9. Phan T.G., Nguyen T.A., Yan H., Yagyu F., Kozlov V., Kozlov A., Okitsu S., Muller W.E., and Ushuijma H. Development of a novel protocol for RT-multiplex PCR to detect diarrheal viruses among infants and children with acute gastroenteritis in Eastern Russia. Clin. Lab. 51 (2005) 429-435
10. Pringle C.R. Virus taxonomy at the XIth International Congress of Virology, Sydney, Australia, 1999. Arch. Virol. 144 (1999) 2065-2070
11. Sasaki J., Kusuhara Y., Maeno Y., Kobayashi N., Yamashita T., Sakae K., Takeda N., and Taniguchi K. Construction of an infectious cDNA clone of Aichi virus (a new member of the family Picornaviridae) and mutational analysis of a stem-loop structure at the 5' end of the genome. J. Virol. 75 (2001) 8021-8030
12. Sdiri-Loulizi K., Gharbi-Khelifi H., de Rougemont A., Chouchane S., Sakly N., Ambert-Balay K., Hassine M., Guediche M.N., Aouni M., and Pothier P. Acute infantile gastroenteritis associated with human enteric viruses in Tunisia. J. Clin. Microbiol. 46 (2008) 1349-1355
13. Yamashita T., Kobayashi S., Sakae K., Nakata S., Chiba S., Ishihara Y., and Isomura S. Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J. Infect. Dis. 164 (1991) 954-957
14. Yamashita T., Sakae K., Tsuzuki H., Suzuki Y., Ishikawa N., Takeda N., Miyamura T., and Yamazaki S. Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans. J. Virol. 72 (1998) 8408-8412
15. Yamashita T., Sugiyama M., Tsuzuki H., Sakae K., Suzuki Y., and Miyazaki Y. Application of a reverse transcription-PCR for identification and differentiation of Aichi virus, a new member of the Picornavirus family associated with gastroenteritis in humans. J. Clin. Microbiol. 38 (2000) 2955-2961
16. Yan H., Nguyen T.A., Phan T.G., Okitsu S., Li Y., and Ushijima H. Development of RT-multiplex PCR assay for detection of adenovirus and group A and C rotaviruses in diarrheal fecal specimens from children in China. Kansenshogaku Zasshi 78 (2004) 699-709