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Volumn 16, Issue 6, 2015, Pages

Detection of miRNA regulatory effect on triple negative breast cancer transcriptome

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 103A 3P; MICRORNA 106 5P; MICRORNA 107; MICRORNA 130B 3P; MICRORNA 135B 5P; MICRORNA 141 3P; MICRORNA 150 5P; MICRORNA 15B 5P; MICRORNA 16 5P; MICRORNA 17 5P; MICRORNA 18A 5P; MICRORNA 193A 3P; MICRORNA 19A 3P; MICRORNA 19B 3P; MICRORNA 200C 3P; MICRORNA 20A 5P; MICRORNA 20B 5P; MICRORNA 222 3P; MICRORNA 26A 5P; MICRORNA 29B 3P; MICRORNA 301A 3P; MICRORNA 326; MICRORNA 331 3P; MICRORNA 361 3P; MICRORNA 9 5P; MICRORNA 92A 3P; MICRORNA 93 5P; TRANSCRIPTOME; UNCLASSIFIED DRUG; 3' UNTRANSLATED REGION;

EID: 84969160195     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-16-S6-S4     Document Type: Article
Times cited : (12)

References (46)
  • 1
    • 18044377963 scopus 로고    scopus 로고
    • Principles of microRNA-target recognition
    • Brennecke J, Stark A, Russell RB, Cohen SM: Principles of microRNA-target recognition. PLOS Biology. 2005, 3 (3): e85-10.1371/journal.pbio.0030085.
    • (2005) PLOS Biology , vol.3 , Issue.3 , pp. e85
    • Brennecke, J.1    Stark, A.2    Russell, R.B.3    Cohen, S.M.4
  • 2
    • 58849093262 scopus 로고    scopus 로고
    • Revisiting the principles of microRNA target recognition and mode of action
    • Brodersen P, Voinnet O: Revisiting the principles of microRNA target recognition and mode of action. Nature Reviews Molecular Cell Biology. 2009, 10 (2): 141-148. 10.1038/nrm2619.
    • (2009) Nature Reviews Molecular Cell Biology , vol.10 , Issue.2 , pp. 141-148
    • Brodersen, P.1    Voinnet, O.2
  • 3
    • 84876935138 scopus 로고    scopus 로고
    • Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
    • Helwak A, Kudla G, Dudnakova T, Tollervey D: Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell. 2013, 153 (3): 654-65. 10.1016/j.cell.2013.03.043.
    • (2013) Cell , vol.153 , Issue.3 , pp. 654-665
    • Helwak, A.1    Kudla, G.2    Dudnakova, T.3    Tollervey, D.4
  • 6
    • 77955644289 scopus 로고    scopus 로고
    • Mammalian microRNAs predominantly act to decrease target mRNA levels
    • Guo H, Ingolia NT, Weissman JS, Bartel DP: Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature. 2010, 466 (7308): 835-840. 10.1038/nature09267.
    • (2010) Nature , vol.466 , Issue.7308 , pp. 835-840
    • Guo, H.1    Ingolia, N.T.2    Weissman, J.S.3    Bartel, D.P.4
  • 7
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel DP: MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004, 116 (2): 281-297. 10.1016/S0092-8674(04)00045-5.
    • (2004) Cell , vol.116 , Issue.2 , pp. 281-297
    • Bartel, D.P.1
  • 9
    • 84887120736 scopus 로고    scopus 로고
    • Dampening of expression oscillations by synchronous regulation of a microRNA and its target
    • Kim Dh, Grun D, van Oudenaarden A: Dampening of expression oscillations by synchronous regulation of a microRNA and its target. Nat Genet. 2013, 45 (11): 1337-44. 10.1038/ng.2763.
    • (2013) Nat Genet , vol.45 , Issue.11 , pp. 1337-1344
    • Kim, D.1    Grun, D.2    van Oudenaarden, A.3
  • 10
    • 53549097349 scopus 로고    scopus 로고
    • MicroRNAs: key players in the immune system, differentiation, tumorigenesis and cell death
    • Schickel R, Boyerinas B, Park SM, Peter ME: MicroRNAs: key players in the immune system, differentiation, tumorigenesis and cell death. Oncogene. 2008, 27 (45): 5959-5974. 10.1038/onc.2008.274.
    • (2008) Oncogene , vol.27 , Issue.45 , pp. 5959-5974
    • Schickel, R.1    Boyerinas, B.2    Park, S.M.3    Peter, M.E.4
  • 11
    • 33645294070 scopus 로고    scopus 로고
    • Oncomirs - microRNAs with a role in cancer
    • Esquela-Kerscher A, Slack FJ: Oncomirs - microRNAs with a role in cancer. Nat Rev Cancer. 2006, 6 (4): 259-269. 10.1038/nrc1840.
    • (2006) Nat Rev Cancer , vol.6 , Issue.4 , pp. 259-269
    • Esquela-Kerscher, A.1    Slack, F.J.2
  • 12
    • 57049175013 scopus 로고    scopus 로고
    • Detecting microRNA binding and siRNA off-target effects from expression data
    • van Dongen S, Abreu-Goodger C, Enright AJ: Detecting microRNA binding and siRNA off-target effects from expression data. Nat Methods. 2008, 5 (12): 1023-5. 10.1038/nmeth.1267.
    • (2008) Nat Methods , vol.5 , Issue.12 , pp. 1023-1025
    • van Dongen, S.1    Abreu-Goodger, C.2    Enright, A.J.3
  • 13
    • 79960028760 scopus 로고    scopus 로고
    • mirAct: a web tool for evaluating microRNA activity based on gene expression data
    • Liang Z, Zhou H, He Z, Zheng H, Wu J: mirAct: a web tool for evaluating microRNA activity based on gene expression data. Nucleic Acids Res. 2011, 39: W139-44. 10.1093/nar/gkr351.
    • (2011) Nucleic Acids Res , vol.39 , pp. W139-W144
    • Liang, Z.1    Zhou, H.2    He, Z.3    Zheng, H.4    Wu, J.5
  • 14
    • 84877849011 scopus 로고    scopus 로고
    • cWords - systematic microRNA regulatory motif discovery from mRNA expression data
    • Rasmussen SH, Jacobsen A, Krogh A: cWords - systematic microRNA regulatory motif discovery from mRNA expression data. Silence. 2013, 4 (1): 2-10.1186/1758-907X-4-2.
    • (2013) Silence , vol.4 , Issue.1 , pp. 2
    • Rasmussen, S.H.1    Jacobsen, A.2    Krogh, A.3
  • 16
    • 84884735952 scopus 로고    scopus 로고
    • Circular RNA and miR-7 in cancer
    • Hansen TB, Kjems J, Damgaard CK: Circular RNA and miR-7 in cancer. Cancer Res. 2013, 73 (18): 5609-12. 10.1158/0008-5472.CAN-13-1568.
    • (2013) Cancer Res , vol.73 , Issue.18 , pp. 5609-5612
    • Hansen, T.B.1    Kjems, J.2    Damgaard, C.K.3
  • 17
    • 84892573723 scopus 로고    scopus 로고
    • The multilayered complexity of ceRNA crosstalk and competition
    • Tay Y, Rinn J, Pandolfi PP: The multilayered complexity of ceRNA crosstalk and competition. Nature. 2014, 505 (7483): 344-52. 10.1038/nature12986.
    • (2014) Nature , vol.505 , Issue.7483 , pp. 344-352
    • Tay, Y.1    Rinn, J.2    Pandolfi, P.P.3
  • 24
    • 84877028141 scopus 로고    scopus 로고
    • Comprehensive molecular portraits of human breast tumours
    • Cancer Genome Atlas Network: Comprehensive molecular portraits of human breast tumours. Nature. 2012, 490 (7418): 61-70. 10.1038/nature11412.
    • (2012) Nature , vol.490 , Issue.7418 , pp. 61-70
  • 25
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: determinants beyond seed pairing
    • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP: MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell. 2007, 27 (1): 91-105. 10.1016/j.molcel.2007.06.017.
    • (2007) Mol Cell , vol.27 , Issue.1 , pp. 91-105
    • Grimson, A.1    Farh, K.K.2    Johnston, W.K.3    Garrett-Engele, P.4    Lim, L.P.5    Bartel, D.P.6
  • 26
    • 36649025655 scopus 로고    scopus 로고
    • OncomiRs: the discovery and progress of microRNAs in cancers
    • Cho WC: OncomiRs: the discovery and progress of microRNAs in cancers. Mol Cancer. 2007, 25 (6): 60-
    • (2007) Mol Cancer , vol.25 , Issue.6 , pp. 60
    • Cho, W.C.1
  • 28
    • 34547555796 scopus 로고    scopus 로고
    • Global and local architecture of the mammalian microRNA-transcription factor regulatory network
    • Shalgi R, Lieber D, Oren M, Pilpel Y: Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comput Biol. 2007, 3 (7): e131-10.1371/journal.pcbi.0030131.
    • (2007) PLoS Comput Biol , vol.3 , Issue.7 , pp. e131
    • Shalgi, R.1    Lieber, D.2    Oren, M.3    Pilpel, Y.4
  • 29
    • 70349334678 scopus 로고    scopus 로고
    • Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human
    • Re A, Corá D, Taverna D, Caselle M: Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human. Mol Biosyst. 2009, 5 (8): 854-67. 10.1039/b900177h.
    • (2009) Mol Biosyst , vol.5 , Issue.8 , pp. 854-867
    • Re, A.1    Corá, D.2    Taverna, D.3    Caselle, M.4
  • 30
    • 84895770460 scopus 로고    scopus 로고
    • A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes
    • Riba A, Bosia C, El Baroudi M, Ollino L, Caselle M: A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes. PLoS Comput Biol. 2014, 10 (2): e1003490-10.1371/journal.pcbi.1003490.
    • (2014) PLoS Comput Biol , vol.10 , Issue.2 , pp. e1003490
    • Riba, A.1    Bosia, C.2    El Baroudi, M.3    Ollino, L.4    Caselle, M.5
  • 31
    • 79951712038 scopus 로고    scopus 로고
    • Minireview: Basal-like breast cancer: from molecular profiles to targeted therapies
    • Toft DJ, Cryns VL: Minireview: Basal-like breast cancer: from molecular profiles to targeted therapies. Mol Endocrinol. 2011, 25 (2): 199-211. 10.1210/me.2010-0164.
    • (2011) Mol Endocrinol , vol.25 , Issue.2 , pp. 199-211
    • Toft, D.J.1    Cryns, V.L.2
  • 32
    • 84894438170 scopus 로고    scopus 로고
    • Dysregulation of microRNA expression drives aberrant DNA hypermethylation in basal-like breast cancer
    • Sandhu R, Rivenbark AG, Mackler RM, Livasy CA, Coleman WB: Dysregulation of microRNA expression drives aberrant DNA hypermethylation in basal-like breast cancer. Int J Oncol. 2014, 44 (2): 563-72.
    • (2014) Int J Oncol , vol.44 , Issue.2 , pp. 563-572
    • Sandhu, R.1    Rivenbark, A.G.2    Mackler, R.M.3    Livasy, C.A.4    Coleman, W.B.5
  • 34
    • 36349001297 scopus 로고    scopus 로고
    • The oncogenic microRNA-27a targets genes that regulate specificity protein transcription factors and the G2-M checkpoint in MDA-MB-231 breast cancer cells
    • 15.
    • Mertens-Talcott SU1, Chintharlapalli S, Li X, Safe S: The oncogenic microRNA-27a targets genes that regulate specificity protein transcription factors and the G2-M checkpoint in MDA-MB-231 breast cancer cells. Cancer Res. 2007, 15;67 (22): 11001-11.
    • (2007) Cancer Res , vol.67 , Issue.22 , pp. 11001-11011
    • Mertens-Talcott, S.U.1    Chintharlapalli, S.2    Li, X.3    Safe, S.4
  • 37
    • 67349149082 scopus 로고    scopus 로고
    • MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells
    • Xu N, Papagiannakopoulos T, Pan G, Thomson JA, Kosik KS: MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells. Cell. 2009, 137 (4): 647-658. 10.1016/j.cell.2009.02.038.
    • (2009) Cell , vol.137 , Issue.4 , pp. 647-658
    • Xu, N.1    Papagiannakopoulos, T.2    Pan, G.3    Thomson, J.A.4    Kosik, K.S.5
  • 40
  • 43
    • 84969211266 scopus 로고    scopus 로고
    • [ http://acsn.curie.fr ]
  • 44
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Statist Soc B. 1995, 57 (1): 289-300.
    • (1995) J R Statist Soc B , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


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