-
1
-
-
84923198503
-
Right place at the right time: Visualizing and understanding mRNA localization
-
Buxbaum AR, Haimovich G, Singer RH (2015) In the right place at the right time: Visualizing and understanding mRNA localization. Nat Rev Mol Cell Biol 16(2):95-109.
-
(2015)
Nat Rev Mol Cell Biol
, vol.16
, Issue.2
, pp. 95-109
-
-
Buxbaum, A.R.1
Haimovich, G.2
Singer, R.H.3
-
2
-
-
79551537838
-
A transgenic mouse for in vivo detection of endogenous labeled mRNA
-
Lionnet T, et al. (2011) A transgenic mouse for in vivo detection of endogenous labeled mRNA. Nat Methods 8(2):165-170.
-
(2011)
Nat Methods
, vol.8
, Issue.2
, pp. 165-170
-
-
Lionnet, T.1
-
3
-
-
65449131152
-
Imaging intracellular RNA distribution and dynamics in living cells
-
Tyagi S (2009) Imaging intracellular RNA distribution and dynamics in living cells. Nat Methods 6(5):331-338.
-
(2009)
Nat Methods
, vol.6
, Issue.5
, pp. 331-338
-
-
Tyagi, S.1
-
4
-
-
84908519178
-
RNA-protein interactions: An overview
-
Re A, Joshi T, Kulberkyte E, Morris Q, Workman CT (2014) RNA-protein interactions: An overview. Methods Mol Biol 1097:491-521.
-
(2014)
Methods Mol Biol
, vol.1097
, pp. 491-521
-
-
Re, A.1
Joshi, T.2
Kulberkyte, E.3
Morris, Q.4
Workman, C.T.5
-
5
-
-
84885928855
-
Engineering RNA-binding proteins for biology
-
Chen Y, Varani G (2013) Engineering RNA-binding proteins for biology. FEBS J 280(16):3734-3754.
-
(2013)
FEBS J
, vol.280
, Issue.16
, pp. 3734-3754
-
-
Chen, Y.1
Varani, G.2
-
6
-
-
84905593100
-
A protein-RNA specificity code enables targeted activation of an endogenous human transcript
-
Campbell ZT, Valley CT, Wickens M (2014) A protein-RNA specificity code enables targeted activation of an endogenous human transcript. Nat Struct Mol Biol 21(8):732-738.
-
(2014)
Nat Struct Mol Biol
, vol.21
, Issue.8
, pp. 732-738
-
-
Campbell, Z.T.1
Valley, C.T.2
Wickens, M.3
-
7
-
-
84896734892
-
Modular assembly of designer PUF proteins for specific post-transcriptional regulation of endogenous RNA
-
Abil Z, Denard CA, Zhao H (2014) Modular assembly of designer PUF proteins for specific post-transcriptional regulation of endogenous RNA. J Biol Eng 8(1):7.
-
(2014)
J Biol Eng
, vol.8
, Issue.1
, pp. 7
-
-
Abil, Z.1
Denard, C.A.2
Zhao, H.3
-
8
-
-
84922741866
-
An artificial PPR scaffold for programmable RNA recognition
-
Coquille S, et al. (2014) An artificial PPR scaffold for programmable RNA recognition. Nat Commun 5:5729.
-
(2014)
Nat Commun
, vol.5
, pp. 5729
-
-
Coquille, S.1
-
9
-
-
84857198283
-
Modular recognition of nucleic acids by PUF, TALE and PPR proteins
-
Filipovska A, Rackham O (2012) Modular recognition of nucleic acids by PUF, TALE and PPR proteins. Mol Biosyst 8(3):699-708.
-
(2012)
Mol Biosyst
, vol.8
, Issue.3
, pp. 699-708
-
-
Filipovska, A.1
Rackham, O.2
-
10
-
-
0037457894
-
Human Pumilio-2 is expressed in embryonic stem cells and germ cells and interacts with DAZ (Deleted in AZoospermia) and DAZ-like proteins
-
Moore FL, et al. (2003) Human Pumilio-2 is expressed in embryonic stem cells and germ cells and interacts with DAZ (Deleted in AZoospermia) and DAZ-like proteins. Proc Natl Acad Sci USA 100(2):538-543.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.2
, pp. 538-543
-
-
Moore, F.L.1
-
11
-
-
34249316905
-
RNA-binding proteins: Modular design for efficient function
-
Lunde BM, Moore C, Varani G (2007) RNA-binding proteins: modular design for efficient function. Nat Rev Mol Cell Biol 8(6):479-490.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, Issue.6
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
12
-
-
0036498828
-
A PUF family portrait: 3'UTR regulation as a way of life
-
Wickens M, Bernstein DS, Kimble J, Parker R (2002) A PUF family portrait: 3'UTR regulation as a way of life. Trends Genet 18(3):150-157.
-
(2002)
Trends Genet
, vol.18
, Issue.3
, pp. 150-157
-
-
Wickens, M.1
Bernstein, D.S.2
Kimble, J.3
Parker, R.4
-
13
-
-
0037121055
-
Cloning and comparative sequence analysis of PUM1 and PUM2 genes, human members of the Pumilio family of RNA-binding proteins
-
Spassov DS, Jurecic R (2002) Cloning and comparative sequence analysis of PUM1 and PUM2 genes, human members of the Pumilio family of RNA-binding proteins. Gene 299(1-2):195-204.
-
(2002)
Gene
, vol.299
, Issue.1-2
, pp. 195-204
-
-
Spassov, D.S.1
Jurecic, R.2
-
14
-
-
0035022798
-
Crystal structure of a Pumilio homology domain
-
Wang X, Zamore PD, Hall TM (2001) Crystal structure of a Pumilio homology domain. Mol Cell 7(4):855-865.
-
(2001)
Mol Cell
, vol.7
, Issue.4
, pp. 855-865
-
-
Wang, X.1
Zamore, P.D.2
Hall, T.M.3
-
15
-
-
0037162703
-
Modular recognition of RNA by a human pumilio-homology domain
-
Wang X, McLachlan J, Zamore PD, Hall TMT (2002) Modular recognition of RNA by a human pumilio-homology domain. Cell 110(4):501-512.
-
(2002)
Cell
, vol.110
, Issue.4
, pp. 501-512
-
-
Wang, X.1
McLachlan, J.2
Zamore, P.D.3
Hall, T.M.T.4
-
16
-
-
33748784359
-
Engineering RNA sequence specificity of Pumilio repeats
-
Cheong C-G, Hall TMT (2006) Engineering RNA sequence specificity of Pumilio repeats. Proc Natl Acad Sci USA 103(37):13635-13639.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.37
, pp. 13635-13639
-
-
Cheong, C.-G.1
Hall, T.M.T.2
-
17
-
-
0031440357
-
The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins
-
Zamore PD, Williamson JR, Lehmann R (1997) The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins. RNA 3(12):1421-1433.
-
(1997)
RNA
, vol.3
, Issue.12
, pp. 1421-1433
-
-
Zamore, P.D.1
Williamson, J.R.2
Lehmann, R.3
-
18
-
-
41649092045
-
Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p
-
Miller MT, Higgin JJ, Hall TM (2008) Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p. Nat Struct Mol Biol 15(4): 397-402.
-
(2008)
Nat Struct Mol Biol
, vol.15
, Issue.4
, pp. 397-402
-
-
Miller, M.T.1
Higgin, J.J.2
Hall, T.M.3
-
19
-
-
84863116797
-
Divergence of Pumilio/fem-3 mRNA binding factor (PUF) protein specificity through variations in an RNA-binding pocket
-
Qiu C, et al. (2012) Divergence of Pumilio/fem-3 mRNA binding factor (PUF) protein specificity through variations in an RNA-binding pocket. J Biol Chem 287(9): 6949-6957.
-
(2012)
J Biol Chem
, vol.287
, Issue.9
, pp. 6949-6957
-
-
Qiu, C.1
-
20
-
-
79960962252
-
Finding the missing code of RNA recognition by PUF proteins
-
Chen Y, Varani G (2011) Finding the missing code of RNA recognition by PUF proteins. Chem Biol 18(7):821-823.
-
(2011)
Chem Biol
, vol.18
, Issue.7
, pp. 821-823
-
-
Chen, Y.1
Varani, G.2
-
21
-
-
79551685675
-
A TALE nuclease architecture for efficient genome editing
-
Miller JC, et al. (2011) A TALE nuclease architecture for efficient genome editing. Nat Biotechnol 29(2):143-148.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.2
, pp. 143-148
-
-
Miller, J.C.1
-
22
-
-
79961192836
-
Targeted gene disruption in somatic zebrafish cells using engineered TALENs
-
Sander JD, et al. (2011) Targeted gene disruption in somatic zebrafish cells using engineered TALENs. Nat Biotechnol 29(8):697-698.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.8
, pp. 697-698
-
-
Sander, J.D.1
-
23
-
-
34250210525
-
Imaging dynamics of endogenous mitochondrial RNA in single living cells
-
Ozawa T, Natori Y, Sato M, Umezawa Y (2007) Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat Methods 4(5):413-419.
-
(2007)
Nat Methods
, vol.4
, Issue.5
, pp. 413-419
-
-
Ozawa, T.1
Natori, Y.2
Sato, M.3
Umezawa, Y.4
-
24
-
-
79960361264
-
Visualization of nonengineered single mRNAs in living cells using genetically encoded fluorescent probes
-
Yamada T, Yoshimura H, Inaguma A, Ozawa T (2011) Visualization of nonengineered single mRNAs in living cells using genetically encoded fluorescent probes. Anal Chem 83(14):5708-5714.
-
(2011)
Anal Chem
, vol.83
, Issue.14
, pp. 5708-5714
-
-
Yamada, T.1
Yoshimura, H.2
Inaguma, A.3
Ozawa, T.4
-
25
-
-
84862531455
-
Fluorescent probes for imaging endogenous β-actin mRNA in living cells using fluorescent protein-tagged pumilio
-
Yoshimura H, Inaguma A, Yamada T, Ozawa T (2012) Fluorescent probes for imaging endogenous β-actin mRNA in living cells using fluorescent protein-tagged pumilio. ACS Chem Biol 7(6):999-1005.
-
(2012)
ACS Chem Biol
, vol.7
, Issue.6
, pp. 999-1005
-
-
Yoshimura, H.1
Inaguma, A.2
Yamada, T.3
Ozawa, T.4
-
26
-
-
59149083312
-
Live-cell imaging of viral RNA genomes using a Pumilio-based reporter
-
Tilsner J, et al. (2009) Live-cell imaging of viral RNA genomes using a Pumilio-based reporter. Plant J 57(4):758-770.
-
(2009)
Plant J
, vol.57
, Issue.4
, pp. 758-770
-
-
Tilsner, J.1
-
27
-
-
33845723065
-
Post-translational enzyme activation in an animal via optimized conditional protein splicing
-
Schwartz EC, Saez L, Young MW, Muir TW (2007) Post-translational enzyme activation in an animal via optimized conditional protein splicing. Nat Chem Biol 3(1):50-54.
-
(2007)
Nat Chem Biol
, vol.3
, Issue.1
, pp. 50-54
-
-
Schwartz, E.C.1
Saez, L.2
Young, M.W.3
Muir, T.W.4
-
28
-
-
0029834656
-
The steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system
-
Protein splicing involving the Saccharomyces cerevisiae VMA intein
-
Chong S, et al. (1996) Protein splicing involving the Saccharomyces cerevisiae VMA intein. The steps in the splicing pathway, side reactions leading to protein cleavage, and establishment of an in vitro splicing system. J Biol Chem 271(36):22159-22168.
-
(1996)
J Biol Chem
, vol.271
, Issue.36
, pp. 22159-22168
-
-
Chong, S.1
-
29
-
-
84878256923
-
Protein scaffold-activated protein trans-splicing in mammalian cells
-
Selgrade DF, Lohmueller JJ, Lienert F, Silver PA (2013) Protein scaffold-activated protein trans-splicing in mammalian cells. J Am Chem Soc 135(20):7713-7719.
-
(2013)
J Am Chem Soc
, vol.135
, Issue.20
, pp. 7713-7719
-
-
Selgrade, D.F.1
Lohmueller, J.J.2
Lienert, F.3
Silver, P.A.4
-
30
-
-
84883212789
-
Light-inducible activation of target mRNA translation in mammalian cells
-
Cao J, et al. (2013) Light-inducible activation of target mRNA translation in mammalian cells. Chem Commun (Camb) 49(75):8338-8340.
-
(2013)
Chem Commun (Camb)
, vol.49
, Issue.75
, pp. 8338-8340
-
-
Cao, J.1
-
31
-
-
84899983162
-
Bidirectional regulation of mRNA translation in mammalian cells by using PUF domains
-
Cao J, Arha M, Sudrik C, Schaffer DV, Kane RS (2014) Bidirectional regulation of mRNA translation in mammalian cells by using PUF domains. Angew Chem Int Ed Engl 53(19):4900-4904.
-
(2014)
Angew Chem Int Ed Engl
, vol.53
, Issue.19
, pp. 4900-4904
-
-
Cao, J.1
Arha, M.2
Sudrik, C.3
Schaffer, D.V.4
Kane, R.S.5
-
32
-
-
84921804074
-
Pumilio-based RNA in vivo imaging
-
Tilsner J (2015) Pumilio-based RNA in vivo imaging. Methods Mol Biol 1217:295-328.
-
(2015)
Methods Mol Biol
, vol.1217
, pp. 295-328
-
-
Tilsner, J.1
-
33
-
-
84869419167
-
Engineering RNA endonucleases with customized sequence specificities
-
Choudhury R, Tsai YS, Dominguez D, Wang Y, Wang Z (2012) Engineering RNA endonucleases with customized sequence specificities. Nat Commun 3:1147.
-
(2012)
Nat Commun
, vol.3
, pp. 1147
-
-
Choudhury, R.1
Tsai, Y.S.2
Dominguez, D.3
Wang, Y.4
Wang, Z.5
-
35
-
-
84897090228
-
Highly multiplexed subcellular RNA sequencing in situ
-
Lee JH, et al. (2014) Highly multiplexed subcellular RNA sequencing in situ. Science 343(6177):1360-1363.
-
(2014)
Science
, vol.343
, Issue.6177
, pp. 1360-1363
-
-
Lee, J.H.1
-
36
-
-
79960697001
-
Organization of intracellular reactions with rationally designed RNA assemblies
-
Delebecque CJ, Lindner AB, Silver PA, Aldaye FA (2011) Organization of intracellular reactions with rationally designed RNA assemblies. Science 333(6041):470-474.
-
(2011)
Science
, vol.333
, Issue.6041
, pp. 470-474
-
-
Delebecque, C.J.1
Lindner, A.B.2
Silver, P.A.3
Aldaye, F.A.4
-
37
-
-
84861705421
-
Cooperativity in RNA-protein interactions: Global analysis of RNA binding specificity
-
Campbell ZT, et al. (2012) Cooperativity in RNA-protein interactions: Global analysis of RNA binding specificity. Cell Reports 1(5):570-581.
-
(2012)
Cell Reports
, vol.1
, Issue.5
, pp. 570-581
-
-
Campbell, Z.T.1
-
38
-
-
73949159967
-
Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein
-
Wang Y, Opperman L, Wickens M, Hall TMT (2009) Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein. Proc Natl Acad Sci USA 106(48):20186-20191.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.48
, pp. 20186-20191
-
-
Wang, Y.1
Opperman, L.2
Wickens, M.3
Hall, T.M.T.4
-
39
-
-
33644991514
-
A single spacer nucleotide determines the specificities of two mRNA regulatory proteins
-
Opperman L, Hook B, DeFino M, Bernstein DS, Wickens M (2005) A single spacer nucleotide determines the specificities of two mRNA regulatory proteins. Nat Struct Mol Biol 12(11):945-951.
-
(2005)
Nat Struct Mol Biol
, vol.12
, Issue.11
, pp. 945-951
-
-
Opperman, L.1
Hook, B.2
DeFino, M.3
Bernstein, D.S.4
Wickens, M.5
-
40
-
-
15444365620
-
Binding specificity and mRNA targets of a C. Elegans PUF protein, FBF-1
-
Bernstein D, Hook B, Hajarnavis A, Opperman L, Wickens M (2005) Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1. RNA 11(4):447-458.
-
(2005)
RNA
, vol.11
, Issue.4
, pp. 447-458
-
-
Bernstein, D.1
Hook, B.2
Hajarnavis, A.3
Opperman, L.4
Wickens, M.5
-
41
-
-
80053159210
-
Targeted translational regulation using the PUF protein family scaffold
-
Cooke A, Prigge A, Opperman L, Wickens M (2011) Targeted translational regulation using the PUF protein family scaffold. Proc Natl Acad Sci USA 108(38):15870-15875.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.38
, pp. 15870-15875
-
-
Cooke, A.1
Prigge, A.2
Opperman, L.3
Wickens, M.4
-
42
-
-
79952460244
-
Alternate modes of cognate RNA recognition by human PUMILIO proteins
-
Lu G, Hall TMT (2011) Alternate modes of cognate RNA recognition by human PUMILIO proteins. Structure 19(3):361-367.
-
(2011)
Structure
, vol.19
, Issue.3
, pp. 361-367
-
-
Lu, G.1
Hall, T.M.T.2
-
43
-
-
0032055114
-
Nuclear history of a pre-mRNA determines the translational activity of cytoplasmic mRNA
-
Matsumoto K, Wassarman KM, Wolffe AP (1998) Nuclear history of a pre-mRNA determines the translational activity of cytoplasmic mRNA. EMBO J 17(7):2107-2121.
-
(1998)
EMBO J
, vol.17
, Issue.7
, pp. 2107-2121
-
-
Matsumoto, K.1
Wassarman, K.M.2
Wolffe, A.P.3
-
44
-
-
84861170955
-
A transcription activator-like effector toolbox for genome engineering
-
Sanjana NE, et al. (2012) A transcription activator-like effector toolbox for genome engineering. Nat Protoc 7(1):171-192.
-
(2012)
Nat Protoc
, vol.7
, Issue.1
, pp. 171-192
-
-
Sanjana, N.E.1
-
45
-
-
79952197871
-
Fluorescence polarization anisotropy to measure RNA dynamics
-
Shi X, Herschlag D (2009) Fluorescence polarization anisotropy to measure RNA dynamics. Methods Enzymol 469:287-302.
-
(2009)
Methods Enzymol
, vol.469
, pp. 287-302
-
-
Shi, X.1
Herschlag, D.2
-
46
-
-
0030337874
-
Fluorescence anisotropy: Rapid, quantitative assay for protein-DNA and protein-protein interaction
-
Heyduk T, Ma Y, Tang H, Ebright RH (1996) Fluorescence anisotropy: Rapid, quantitative assay for protein-DNA and protein-protein interaction. Methods Enzymol 274: 492-503.
-
(1996)
Methods Enzymol
, vol.274
, pp. 492-503
-
-
Heyduk, T.1
Ma, Y.2
Tang, H.3
Ebright, R.H.4
-
48
-
-
0033922698
-
Analysis of drug-DNA binding data
-
Qu X, Chaires JB (2000) Analysis of drug-DNA binding data. Methods Enzymol 321: 353-369.
-
(2000)
Methods Enzymol
, vol.321
, pp. 353-369
-
-
Qu, X.1
Chaires, J.B.2
-
50
-
-
64149097786
-
The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
-
Bustin SA, et al. (2009) The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55(4):611-622.
-
(2009)
Clin Chem
, vol.55
, Issue.4
, pp. 611-622
-
-
Bustin, S.A.1
-
51
-
-
84867771644
-
Real-time protein unfolding: A method for determining the kinetics of native protein denaturation using a quantitative realtime thermocycler
-
Biggar KK, Dawson NJ, Storey KB (2012) Real-time protein unfolding: A method for determining the kinetics of native protein denaturation using a quantitative realtime thermocycler. Biotechniques 53(4):231-238.
-
(2012)
Biotechniques
, vol.53
, Issue.4
, pp. 231-238
-
-
Biggar, K.K.1
Dawson, N.J.2
Storey, K.B.3
|