-
1
-
-
77952379691
-
Small RNA duplexes function as mobile silencing signals between plant cells
-
Dunoyer P, Schott G, Himber C et al (2010) Small RNA duplexes function as mobile silencing signals between plant cells. Science 328:912-916
-
(2010)
Science
, vol.328
, pp. 912-916
-
-
Dunoyer, P.1
Schott, G.2
Himber, C.3
-
2
-
-
77952679512
-
Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate
-
Carlsbecker A, Lee JY, Roberts CJ et al (2010) Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate. Nature 465:316-321
-
(2010)
Nature
, vol.465
, pp. 316-321
-
-
Carlsbecker, A.1
Lee, J.Y.2
Roberts, C.J.3
-
3
-
-
73949105436
-
Viroids: Small probes for exploring the vast universe of RNA traffi cking in plants
-
Wang Y, Ding B (2010) Viroids: small probes for exploring the vast universe of RNA traffi cking in plants. J Integr Plant Biol 52:28-39
-
(2010)
J Integr Plant Biol
, vol.52
, pp. 28-39
-
-
Wang, Y.1
Ding, B.2
-
4
-
-
78751647617
-
Cellular pathways for viral transport through plasmodesmata
-
Niehl A, Heinlein M (2011) Cellular pathways for viral transport through plasmodesmata. Protoplasma 248:75-99
-
(2011)
Protoplasma
, vol.248
, pp. 75-99
-
-
Niehl, A.1
Heinlein, M.2
-
5
-
-
0029550602
-
Selective traffi cking of KNOTTED1 homeodomain protein and its mRNA through plasmodesmata
-
Lucas WJ, Bouché-Pillon S, Jackson DP et al (1995) Selective traffi cking of KNOTTED1 homeodomain protein and its mRNA through plasmodesmata. Science 270:1980-1983
-
(1995)
Science
, vol.270
, pp. 1980-1983
-
-
Lucas, W.J.1
Bouché-pillon, S.2
Jackson, D.P.3
-
6
-
-
17044374051
-
A novel cell-to-cell traffi cking assay indicates that the KNOX homeodomain is necessary and suffi-cient for intercellular protein and mRNA traffi cking
-
Kim JY, Rim Y, Wang J et al (2005) A novel cell-to-cell traffi cking assay indicates that the KNOX homeodomain is necessary and suffi-cient for intercellular protein and mRNA traffi cking. Genes Dev 19:788-793
-
(2005)
Genes Dev
, vol.19
, pp. 788-793
-
-
Kim, J.Y.1
Rim, Y.2
Wang, J.3
-
7
-
-
65449131152
-
Imaging intracellular RNA distribution and dynamics in living cells
-
Tyagi S (2009) Imaging intracellular RNA distribution and dynamics in living cells. Nat Methods 6:331-338
-
(2009)
Nat Methods
, vol.6
, pp. 331-338
-
-
Tyagi, S.1
-
9
-
-
0036498828
-
A PUF family portrait: 3′UTR regulation as a way of life
-
Wickens M, Bernstein DS, Kimble J et al (2002) A PUF family portrait: 3′UTR regulation as a way of life. Trends Genet 18:150-157
-
(2002)
Trends Genet
, vol.18
, pp. 150-157
-
-
Wickens, M.1
Bernstein, D.S.2
Kimble, J.3
-
10
-
-
70349241918
-
Molecular characterization of Arabidopsis thaliana PUF proteins—binding specifi city and target candidates
-
Francischini CW, Quaggio RB (2009) Molecular characterization of Arabidopsis thaliana PUF proteins—binding specifi city and target candidates. FEBS J 276:5456-5470
-
(2009)
FEBS J
, vol.276
, pp. 5456-5470
-
-
Francischini, C.W.1
Quaggio, R.B.2
-
11
-
-
77950931631
-
The Puf family of RNA-binding proteins in plants: Phylogeny, structural modeling, activity and subcellular localization
-
Tam P, Barrette-Ng I, Simon D et al (2010) The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. BMC Plant Biol 10:44
-
(2010)
BMC Plant Biol
, vol.10
, pp. 44
-
-
Tam, P.1
Barrette-ng, I.2
Simon, D.3
-
12
-
-
79956218301
-
Pumilio Puf domain RNA-binding proteins in Arabidopsis
-
Abbasi N, Park YI, Choi SB (2011) Pumilio Puf domain RNA-binding proteins in Arabidopsis. Plant Signal Behav 6:364-368
-
(2011)
Plant Signal Behav
, vol.6
, pp. 364-368
-
-
Abbasi, N.1
Park, Y.I.2
Choi, S.B.3
-
13
-
-
79151471434
-
PUF proteins: Repression, activation and mRNA localization
-
Quenault T, Lithgow T, Traven A (2011) PUF proteins: repression, activation and mRNA localization. Trends Cell Biol 21:104-112
-
(2011)
Trends Cell Biol
, vol.21
, pp. 104-112
-
-
Quenault, T.1
Lithgow, T.2
Traven, A.3
-
14
-
-
0037162703
-
Modular recognition of RNA by a human Pumilio-homology domain
-
Wang X, McLachlan J, Zamore PD et al (2002) Modular recognition of RNA by a human Pumilio-homology domain. Cell 110:501-512
-
(2002)
Cell
, vol.110
, pp. 501-512
-
-
Wang, X.1
McLachlan, J.2
Zamore, P.D.3
-
15
-
-
33748784359
-
Engineering RNA sequence specifi city of Pumilio repeats
-
Cheong CG, Tanaka Hall TM (2006) Engineering RNA sequence specifi city of Pumilio repeats. Proc Natl Acad Sci U S A 103:13635-13639
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 13635-13639
-
-
Cheong, C.G.1
Tanaka Hall, T.M.2
-
16
-
-
60349124749
-
Understanding and engineering RNA sequence specifi city of PUF proteins
-
Lu G, Dolgner SJ, Tanaka Hall TM (2009) Understanding and engineering RNA sequence specifi city of PUF proteins. Curr Opin Struct Biol 19:110-115
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 110-115
-
-
Lu, G.1
Dolgner, S.J.2
Tanaka Hall, T.M.3
-
17
-
-
79952363146
-
The prospects for designer single-stranded RNAbinding proteins
-
Mackay JP, Font J, Segal DJ (2011) The prospects for designer single-stranded RNAbinding proteins. Nat Struct Mol Biol 18: 256-261
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 256-261
-
-
Mackay, J.P.1
Font, J.2
Segal, D.J.3
-
19
-
-
79960671724
-
Specifi c and modular binding code for cytosine recognition in Pumilio/FBF (PUF) RNA-binding domains
-
Dong S, Wang Y, Cassidy-Amstutz C et al (2011) Specifi c and modular binding code for cytosine recognition in Pumilio/FBF (PUF) RNA-binding domains. J Biol Chem 286: 26732-26742
-
(2011)
J Biol Chem
, vol.286
, pp. 26732-26742
-
-
Dong, S.1
Wang, Y.2
Cassidy-amstutz, C.3
-
20
-
-
34250210525
-
Imaging dynamics of endogenous mitochondrial RNA in single living cells
-
Ozawa T, Natori Y, Sato M et al (2007) Imaging dynamics of endogenous mitochondrial RNA in single living cells. Nat Methods 4:413-419
-
(2007)
Nat Methods
, vol.4
, pp. 413-419
-
-
Ozawa, T.1
Natori, Y.2
Sato, M.3
-
21
-
-
79960361264
-
Visualization of nonengineered single mRNAs in living cells using genetically encoded fl uorescent probes
-
Yamada T, Yoshimura H, Inaguma A et al (2011) Visualization of nonengineered single mRNAs in living cells using genetically encoded fl uorescent probes. Anal Chem 83:5708-5714
-
(2011)
Anal Chem
, vol.83
, pp. 5708-5714
-
-
Yamada, T.1
Yoshimura, H.2
Inaguma, A.3
-
22
-
-
80055094816
-
The DEAD-box RNA helicase DDX6 is required for effi cient encapsidation of a retroviral genome
-
Yu SF, Lujan P, Jackson DL et al (2011) The DEAD-box RNA helicase DDX6 is required for effi cient encapsidation of a retroviral genome. PLoS Pathog 7:e1002303
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002303
-
-
Yu, S.F.1
Lujan, P.2
Jackson, D.L.3
-
23
-
-
84862531455
-
Fluorescent probes for imaging endogenous β-actin mRNA in living cells using fl uorescent protein-tagged Pumilio
-
Yoshimura H, Inaguma A, Yamada T et al (2012) Fluorescent probes for imaging endogenous β-actin mRNA in living cells using fl uorescent protein-tagged Pumilio. ACS Chem Biol 7:999-1005
-
(2012)
ACS Chem Biol
, vol.7
, pp. 999-1005
-
-
Yoshimura, H.1
Inaguma, A.2
Yamada, T.3
-
24
-
-
59149083312
-
Live-cell imaging of viral RNA genomes using a Pumilio-based reporter
-
Tilsner J, Linnik O, Christensen NM et al (2009) Live-cell imaging of viral RNA genomes using a Pumilio-based reporter. Plant J 57: 758-770
-
(2009)
Plant J
, vol.57
, pp. 758-770
-
-
Tilsner, J.1
Linnik, O.2
Christensen, N.M.3
-
25
-
-
73849139654
-
Sequential recruitment of the endoplasmic reticulum and chloroplasts for plant potyvirus replication
-
Wei T, Huang TS, McNeil J et al (2010) Sequential recruitment of the endoplasmic reticulum and chloroplasts for plant potyvirus replication. J Virol 84:799-809
-
(2010)
J Virol
, vol.84
, pp. 799-809
-
-
Wei, T.1
Huang, T.S.2
McNeil, J.3
-
26
-
-
84857989980
-
The TGB1 movement protein of potato virus X re-organises actin and endomembranes into the ‘X-body’ a viral replication factory
-
Tilsner J, Linnik O, Wright KM et al (2012) The TGB1 movement protein of potato virus X re-organises actin and endomembranes into the ‘X-body’ a viral replication factory. Plant Physiol 158:1359-1370
-
(2012)
Plant Physiol
, vol.158
, pp. 1359-1370
-
-
Tilsner, J.1
Linnik, O.2
Wright, K.M.3
-
27
-
-
84880030958
-
Replication and traffi cking of a plant virus are coupled at the entrances of plasmodesmata
-
Tilsner J, Linnik O, Louveaux M et al (2013) Replication and traffi cking of a plant virus are coupled at the entrances of plasmodesmata. J Cell Biol 201:981-995
-
(2013)
J Cell Biol
, vol.201
, pp. 981-995
-
-
Tilsner, J.1
Linnik, O.2
Louveaux, M.3
-
28
-
-
41449107841
-
Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity
-
Gupta YK, Nair DT, Wharton RP et al (2008) Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity. Structure 16:549-557
-
(2008)
Structure
, vol.16
, pp. 549-557
-
-
Gupta, Y.K.1
Nair, D.T.2
Wharton, R.P.3
-
29
-
-
79952460244
-
Alternate modes of cognate RNA recognition by human PUMILIO proteins
-
Lu G, Tanaka Hall TM (2011) Alternate modes of cognate RNA recognition by human PUMILIO proteins. Structure 19:361-367
-
(2011)
Structure
, vol.19
, pp. 361-367
-
-
Lu, G.1
Tanaka Hall, T.M.2
-
30
-
-
84885898647
-
Engineered proteins with Pumilio/fem-3 mRNA binding factor scaffold to manipulate RNA metabolism
-
Wang Y, Wang Z, Tanaka Hall TM (2013) Engineered proteins with Pumilio/fem-3 mRNA binding factor scaffold to manipulate RNA metabolism. FEBS J. doi: 10.1111/ febs.12367
-
(2013)
FEBS J
-
-
Wang, Y.1
Wang, Z.2
Tanaka Hall, T.M.3
-
31
-
-
84869238373
-
Bimolecular fl uorescence complementation (BiFC): A 5-year update and future perspectives
-
Kodama Y, Hu C-D (2012) Bimolecular fl uorescence complementation (BiFC): a 5-year update and future perspectives. Biotechniques 53:285-298
-
(2012)
Biotechniques
, vol.53
, pp. 285-298
-
-
Kodama, Y.1
Hu, C.-D.2
-
32
-
-
77149134956
-
Detection of in vivo interactions between Arabidopsis class A-HSFs, using a novel BiFC fragment, and identifi cation of novel class B-HSF interacting proteins
-
Li M, Doll J, Weckermann K et al (2010) Detection of in vivo interactions between Arabidopsis class A-HSFs, using a novel BiFC fragment, and identifi cation of novel class B-HSF interacting proteins. Eur J Cell Biol 89:126-132
-
(2010)
Eur J Cell Biol
, vol.89
, pp. 126-132
-
-
Li, M.1
Doll, J.2
Weckermann, K.3
-
33
-
-
84872576102
-
Tetramolecular fl uorescence complementation for detection of specifi c RNAs in vitro
-
Kellermann SJ, Rath AK, Rentmeister A (2013) Tetramolecular fl uorescence complementation for detection of specifi c RNAs in vitro. Chembiochem 14:200-204
-
(2013)
Chembiochem
, vol.14
, pp. 200-204
-
-
Kellermann, S.J.1
Rath, A.K.2
Rentmeister, A.3
-
34
-
-
0037995710
-
Simultaneous visualization of multiple protein interactions in living cells using multicolor fl uorescence complementation analysis
-
Hu CD, Kerppola TK (2003) Simultaneous visualization of multiple protein interactions in living cells using multicolor fl uorescence complementation analysis. Nat Biotechnol 21:539-545
-
(2003)
Nat Biotechnol
, vol.21
, pp. 539-545
-
-
Hu, C.D.1
Kerppola, T.K.2
-
35
-
-
54849417596
-
Vectors for multi-color bimolecular fl uorescence complementation to investigate proteinprotein interactions in living plant cells
-
Lee LY, Fang MJ, Kuang LY et al (2008) Vectors for multi-color bimolecular fl uorescence complementation to investigate proteinprotein interactions in living plant cells. Plant Methods 4:24
-
(2008)
Plant Methods
, vol.4
, pp. 24
-
-
Lee, L.Y.1
Fang, M.J.2
Kuang, L.Y.3
-
36
-
-
54349105689
-
Multicolor bimolecular fl uorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta
-
Waadt R, Schmidt LK, Lohse M et al (2008) Multicolor bimolecular fl uorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta. Plant J 56:505-516
-
(2008)
Plant J
, vol.56
, pp. 505-516
-
-
Waadt, R.1
Schmidt, L.K.2
Lohse, M.3
-
37
-
-
70349601671
-
New GATEWAY vectors for high throughput analyses of protein-protein interactions by bimolecular fl uorescence complementation
-
Gehl C, Waadt R, Kudla J et al (2009) New GATEWAY vectors for high throughput analyses of protein-protein interactions by bimolecular fl uorescence complementation. Mol Plant 2:1051-1058
-
(2009)
Mol Plant
, vol.2
, pp. 1051-1058
-
-
Gehl, C.1
Waadt, R.2
Kudla, J.3
-
38
-
-
66749111364
-
A new red bimolecular fl uorescence complementation based on TagRFP
-
Qin L, Chu J, Zheng Y et al (2009) A new red bimolecular fl uorescence complementation based on TagRFP. Proc SPIE 7191:71910G
-
(2009)
Proc SPIE
, vol.7191
, pp. 71910G
-
-
Qin, L.1
Chu, J.2
Zheng, Y.3
-
39
-
-
79955769528
-
An optimized mRFPbased bimolecular fl uorescence complementation system for the detection of protein-protein interactions in planta
-
Zilian E, Maiss E (2011) An optimized mRFPbased bimolecular fl uorescence complementation system for the detection of protein-protein interactions in planta. J Virol Methods 174:158-165
-
(2011)
J Virol Methods
, vol.174
, pp. 158-165
-
-
Zilian, E.1
Maiss, E.2
-
40
-
-
33746435428
-
An improved mRFP1 adds red to bimolecular fl uorescence complementation
-
Jach G, Pesch M, Richter K et al (2006) An improved mRFP1 adds red to bimolecular fl uorescence complementation. Nat Methods 3:597-600
-
(2006)
Nat Methods
, vol.3
, pp. 597-600
-
-
Jach, G.1
Pesch, M.2
Richter, K.3
-
41
-
-
44949255018
-
Ribonomic analysis of human Pum1 reveals cistrans conservation across species despite evolution of diverse mRNA target sets
-
Morris AR, Mukherjee N, Keene JD (2008) Ribonomic analysis of human Pum1 reveals cistrans conservation across species despite evolution of diverse mRNA target sets. Mol Cell Biol 28:4093-4103
-
(2008)
Mol Cell Biol
, vol.28
, pp. 4093-4103
-
-
Morris, A.R.1
Mukherjee, N.2
Keene, J.D.3
-
42
-
-
84872180375
-
Arabidopsis Pumilio protein APUM5 suppresses Cucumber mosaic virus infection via direct binding of viral RNAs
-
Huh SU, Kim MJ, Paek KH (2013) Arabidopsis Pumilio protein APUM5 suppresses Cucumber mosaic virus infection via direct binding of viral RNAs. Proc Natl Acad Sci U S A 110:779-784
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 779-784
-
-
Huh, S.U.1
Kim, M.J.2
Paek, K.H.3
-
43
-
-
84877095677
-
Role of Arabidopsis Pumilio RNA binding protein 5 in virus infection
-
Huh SU, Paek KH (2013) Role of Arabidopsis Pumilio RNA binding protein 5 in virus infection. Plant Signal Behav 8:e23975
-
(2013)
Plant Signal Behav
, vol.8
, pp. e23975
-
-
Huh, S.U.1
Paek, K.H.2
-
44
-
-
47849121275
-
Simultaneous transport of different localized mRNA species revealed by live-cell imaging
-
Lange S, Katayama Y, Schmid M et al (2008) Simultaneous transport of different localized mRNA species revealed by live-cell imaging. Traffi c 9:1256-1267
-
(2008)
Traffi c
, vol.9
, pp. 1256-1267
-
-
Lange, S.1
Katayama, Y.2
Schmid, M.3
-
45
-
-
81255210981
-
Designer RNA-binding proteins: New tools for manipulating the transcriptome
-
Filipovska A, Rackham O (2011) Designer RNA-binding proteins: new tools for manipulating the transcriptome. RNA Biol 8: 978-983
-
(2011)
RNA Biol
, vol.8
, pp. 978-983
-
-
Filipovska, A.1
Rackham, O.2
-
46
-
-
17844386362
-
pSAT vectors: A modular series of plasmids for autofl uorescent protein tagging and expression of multiple genes in plants
-
Tzfi ra T, Tian G-W, Lacroix B et al (2005) pSAT vectors: a modular series of plasmids for autofl uorescent protein tagging and expression of multiple genes in plants. Plant Mol Biol 57:503-516
-
(2005)
Plant Mol Biol
, vol.57
, pp. 503-516
-
-
Tzfi Ra, T.1
Tian, G.-W.2
Lacroix, B.3
-
47
-
-
36148954289
-
Improved Gateway binary vectors: Highperformance vectors for creation of fusion constructs in transgenic analysis of plants
-
Nakagawa T, Suzuki T, Murata S et al (2007) Improved Gateway binary vectors: highperformance vectors for creation of fusion constructs in transgenic analysis of plants. Biosci Biotechnol Biochem 71:2095-2100
-
(2007)
Biosci Biotechnol Biochem
, vol.71
, pp. 2095-2100
-
-
Nakagawa, T.1
Suzuki, T.2
Murata, S.3
-
48
-
-
0037012847
-
Partitioning of lipid-modifi ed monomeric GFPs into membrane microdomains of live cells
-
Zacharias DA, Violin JD, Newton AC et al (2002) Partitioning of lipid-modifi ed monomeric GFPs into membrane microdomains of live cells. Science 296:913-916
-
(2002)
Science
, vol.296
, pp. 913-916
-
-
Zacharias, D.A.1
Violin, J.D.2
Newton, A.C.3
-
50
-
-
79953008180
-
Stacking interactions in PUF-RNA complexes
-
Koh YY, Wang Y, Qiu C et al (2011) Stacking interactions in PUF-RNA complexes. RNA 17:718-727
-
(2011)
RNA
, vol.17
, pp. 718-727
-
-
Koh, Y.Y.1
Wang, Y.2
Qiu, C.3
-
51
-
-
37249086137
-
TRBO: A high-effi ciency Tobacco mosaic virus RNA-based overexpression vector
-
Lindbo JA (2007) TRBO: a high-effi ciency Tobacco mosaic virus RNA-based overexpression vector. Plant Physiol 145:1232-1240
-
(2007)
Plant Physiol
, vol.145
, pp. 1232-1240
-
-
Lindbo, J.A.1
-
52
-
-
70350719211
-
Engineering splicing factors with designed specifi cities
-
Wang Y, Cheong CG, Tanaka Hall TM et al (2009) Engineering splicing factors with designed specifi cities. Nat Methods 6: 825-830
-
(2009)
Nat Methods
, vol.6
, pp. 825-830
-
-
Wang, Y.1
Cheong, C.G.2
Tanaka Hall, T.M.3
|