Unraveling aspects of Bacillus amyloliquefaciens mediated enhanced production of rice under biotic stress of Rhizoctonia solani

Frontiers in Plant Science

Volumn 7, Issue MAY2016, 2016, Pages

  Srivastava, Suchi ^a   Bist, Vidisha ^a   Srivastava, Sonal ^a   Singh, Poonam C ^a   Trivedi, Prabodh K ^a   Asif, Mehar H ^a   Chauhan, Puneet S ^a   Nautiyal, Chandra S ^a  

^a CSIR NATIONAL BOTANICAL RESEARCH INSTITUTE   (India)

Author keywords

B. amyloliquefaciens; Biological control; Plant growth promotion; Rhizoctonia solani; Sheath blight

Indexed keywords

EID: 84966280679     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2016.00587     Document Type: Article

References (58)

1. Aebi, H. (1984). Catalase in vitro. Method Enzymol. 105, 121-126. doi: 10. 1016/S0076-6879(84)05016-3
2. Alteri, C. J., Himpsl, S. D., and Mobley, H. L. T. (2015). Preferential use of central metabolism in vivo reveals a nutritional basis for polymicrobial infection. PLoS Pathog. 11: e1004601. doi: 10. 1371/journal. ppat. 1004601
3. Bari, R., and Jones, J. D. G. (2009). Role of plant hormones in plant defence responses. Plant Mol. Biol. 69, 473-488. doi: 10. 1007/s11103-008-9435-0
4. Beauchamp, C., and Fridovich, I. (1971). Superoxide Dismutase: improved assays and an assay applicable to acrylamide gels. Anal. Biochem. 144, 276-287. doi: 10. 1016/0003-2697(71)90370-8
5. Bellincampi, D., Cervone, F., and Lionetti, V. (2014). Plant cell wall dynamics and wall-related susceptibility in plant-pathogen interactions. Front. Plant Sci. 5: 228. doi: 10. 3389/fpls. 2014. 00228
6. Bolouri-Moghaddam, M. R., Le, R. K., Xiang, L., Rolland, F., and Ende, V. D. W. (2010). Sugar signalling and antioxidant network connections in plant cells. FEBS J. 277, 2022-2037. doi: 10. 1111/j. 1742-4658. 2010. 07633. x
7. Bruggeman, Q., Prunier, F., Mazubert, C., de Bont, L., Garmier, M., Lugan, R., et al. (2015). Involvement of Arabidopsis hexokinase1 in cell death mediated by myo-inositol accumulation. Plant Cell 27, 1801-1814. doi: 10. 1105/tpc. 15. 00068
8. Carvalhais, L. C., Dennis, P. G., Fan, B., Fedoseyenko, D., Kierul, K., Becker, A., et al. (2013). Linking plant nutritional status to plant-microbe interactions. PLoS ONE 8: e68555. doi: 10. 1371/journal. pone. 0068555
9. Chowdhury, S. P., Hartmann, A., Gao, X. W., and Borriss, R. (2015). Biocontrol mechanism by root-associated Bacillus amyloliquefaciens FZB42-a review. Front. Microbiol. 6: 780. doi: 10. 3389/fmicb. 2015. 00780
10. Datta, K., Tu, J., Oliva, N., Ona, I., Velazhahan, R., Mew, T. W., et al. (2001). Enhanced resistance to sheath blight by constitutive expression of infection-related rice chitinase in transgenic elite indica rice cultivars. Plant Sci. 160, 405-414. doi: 10. 1016/S0168-9452(00)00413-1
11. de Souza, E. M., Granada, C. E., and Sperotto, R. A. (2016). Plant pathogens affecting the establishment of plant-symbiont interaction. Front. Plant Sci. 7: 15. doi: 10. 3389/fpls. 2016. 00015
12. Dubois, M., Gilles, K. A., Hamilton, J. K., Rebers, P. A., and Smith, F. (1956). Colorimetric method for determination of sugars and related substances. Anal. Chem. 28, 350-356. doi: 10. 1021/ac60111a017
13. Frey-Klett, P., Burlinson, P., Deveau, A., Barret, M., Tarkka, M., and Samiguet, A. (2011). Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists. Microbiol. Mol. Biol. Rev. 75, 4583-4609. doi: 10. 1128/MMBR. 00020-11
14. Fujita, M., Fujita, Y., Noutoshi, Y., Takahashi, F., Narusaka, Y., Shinozaki, Y. K., et al. (2006). Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. Curr. Opin. Plant Biol. 9, 436-442. doi: 10. 1016/j. pbi. 2006. 05. 014
15. Fukusaki, E., Jumtee, K., Bamba, T., Yamaji, T., and Kobayashi, A. (2006). Metabolic fingerprinting and profiling of Arabidopsis thaliana leaf and its cultured cells T87 by GC/MS. Z. Naturforsch. C 61, 267-272. doi: 10. 1515/znc-2006-3-419
16. Gewin, V. (2003). Genetically modified corn environmental benefits and risks. PLoS Biol. 1: e8. doi: 10. 1371/journal. pbio. 0000008
17. Hamzehzarghani, H., Kushalappa, A. C., Dion, Y., Rioux, S., Comeau, A., Yaylayan, V., et al. (2005). Metabolic profiling and factor analysis to discriminate quantitative resistance in wheat cultivars against fusarium head blight. Physiol. Mol. Plant Pathol. 66, 119-133. doi: 10. 1016/j. pmpp. 2005. 05. 005
18. Hare, P. D., and Cress, W. A. (1997). Metabolic implications of stress-induced proline accumulation in plants. Plant Growth Regul. 21, 79-102. doi: 10. 1016/j. plaphy. 2013. 05. 028
19. Herman, M. A. B., Nault, B. A., and Smart, C. D. (2008). Effects of plant growth-promoting rhizobacteria on bell pepper production and green peach aphid infestations in New York. Crop Protect. 27, 996-1002. doi: 10. 1016/j. cropro. 2007. 12. 004
20. Hossain, M. D. K., Tze, O. S., Nadarajah, K., Jena, K., Bhuiyan, M. D. A. R., and Ratnam, W. (2014). Identification and validation of sheath blight resistance in rice (Oryza sativa L.) cultivars against Rhizoctonia solani. Can. J. Plant Pathol. 36, 482-490. doi: 10. 1080/07060661. 2014. 970577
21. Iriti, M., and Faoro, F. (2009). Chemical diversity and defence metabolism: how plants cope with pathogens and ozone pollution. Int. J. Mol. Sci. 10, 3371-3399. doi: 10. 3390/ijms10083371
22. Kalpana, K., Maruthasalam, S., Thangaswamy, R., Poovannan, K., Kumar, K. K., Kokiladevi, E., et al. (2006). Engineering sheath blight resistance in elite indica rice cultivars using genes encoding defense protein. Plant Sci. 170, 203-215. doi: 10. 1016/j. plantsci. 2005. 08. 002
23. Kumar, K. V. K., Raju, S. K., Reddy, M. S., Kloepper, J. W., Lawrence, K. S., Groth, D. E., et al. (2009). Evaluation of commercially available PGPR for control of rice sheath blight caused by Rhizoctonia solani. J. Pure Appl. Microbiol. 3, 485-488.
24. Kurata, T., and Yamamoto, K. T. (1998). petit1, a conditional growth mutant of Arabidopsis defective in sucrose-dependent elongation growth. Plant Physiol. 118, 793-801. doi: 10. 1104/pp. 118. 3. 793
25. Lee, F. N., and Rush, M. C. (1983). Rice sheath blight: a major rice disease. Plant Dis. 67, 829-832. doi: 10. 1094/PD-67-829
26. Li, P., Wind, J. J., Shi, X., Zhang, H., Hanson, J., Smeekens, S. C., et al. (2011). Fructose sensitivity is suppressed in Arabidopsis by the transcription factor NAC089 lacking the membrane-bound domain. Proc. Natl. Acad. Sci. U. S. A. 108, 3436-3441. doi: 10. 1073/pnas. 1018665108
27. Marshall, D. S., and Rush, M. C. (1980). Relation between infection by Rhizoctonia solani and R. oryzae and disease severity in rice. Cytol. Histol. 70, 941-946.
28. Mchunu, N. P., Permaul, K., Alam, M., and Singh, S. (2013). Carbon utilization profile of a thermophilic fungus, Thermomyces lanuginosus using phenotypic microarray. Adv. Biosci. Biotechnol. 4, 24-32. doi: 10. 4236/abb. 2013. 49A004
29. Nafisi, M., Fimognari, L., and Sakuragi, Y. (2015). Interplays between the cell wall and phytohormones in interaction between plants and necrotrophic pathogens. Phytochemistry 112, 63-71. doi: 10. 1016/j. phytochem. 2014. 11. 008
30. Nakano, Y., and Asada, K. (1981). Hydrogen peroxide is scavenged by ascorbate-specific peroxidase in spinach chloroplasts. Plant Cell Physiol. 22, 867-880.
31. Nakano, Y., Nishikubo, N., Sato-Izawa, K., Mase, K., Kitano, H., Kajita, S., et al. (2013). Transcription profiling identifies candidate genes for secondary cell wall formation and hydroxyl cinnamoyl arabinoxylan biosynthesis in the rice internode. Plant Biotechnol. 30, 433-446. doi: 10. 5511/plantbiotechnology. 13. 0620a
32. Naseem, M., Srivastava, M., Tehseen, M., and Ahmed, N. (2015). Auxin crosstalk to plant immune networks: a plant-pathogen interaction perspective. Curr. Protein Pept. Sci. 16, 389-394. doi: 10. 2174/1389203716666150330124911
33. Nautiyal, C. S., Srivastava, S., Chauhan, P. S., Seem, K., Mishra, A., and Sopory, S. K. (2013). Plant growth-promoting bacteria Bacillus amyloliquefaciens NBRISN13 modulates gene expression profile of leaf and rhizosphere community in rice during salt stress. Plant Physiol. Biochem. 66, 1-9. doi: 10. 1016/j. plaphy. 2013. 01. 020
34. Parker, D., Beckmann, M., Zubair, H., Enot, D. P., Caracuel-Rios, Z., Overy, D. P., et al. (2009). Metabolomic analysis reveals a common pattern of metabolic re-programming during invasion of three host plant species by Magnaporthe grisea. Plant J. 59, 723-737. doi: 10. 1111/j. 1365-313X. 2009. 03912. x
35. Pauly, N., Pucciariello, C., Mandon, K., Innocenti, G., Jamet, A., Baudouin, E., et al. (2006). Reactive oxygen and nitrogen species and glutathione: key players in the legume-Rhizobium symbiosis. J. Exp. Bot. 57, 1769-1776. doi: 10. 1093/jxb/erj184
36. Raiola, A., Lionetti, V., Elmaghraby, I., Immerzeel, P., Mellerowicz, E. J., Salvi, G., et al. (2011). Pectin methylesterase is induced in Arabidopsis upon infection and is necessary for a successful colonization by necrotrophic pathogens. Mol. Plant Microbe Interact. 24, 432-440. doi: 10. 1094/MPMI-07-10-0157
37. Sairanen, I., Novák, O., Pencik, A., Ikeda, Y., Jones, B., Sandberg, G., et al. (2012). Soluble carbohydrates regulate auxin biosynthesis via PIF proteins in Arabidopsis. Plant Cell 24, 4907-4916. doi: 10. 1105/tpc. 112. 104794
38. Sauter, A., Dietz, K. J., and Hartung, W. (2002). A possible stress physiological role of abscisic acid conjugates in root-to-shoot signalling. Plant Cell Environ. 25, 223-228. doi: 10. 1046/j. 1365-3040. 2002. 00747. x
39. Sayari, M., Babaeizad, V., Ghanbari, M. A. T., and Rahimian, H. (2014). Expression of the pathogenesis related proteins, NH-1, PAL, and lipoxygenase in the iranian Tarom and Khazar rice cultivars, in reaction to Rhizoctonia solani-the causal agent of rice sheath blight. J. Plant Protect. Res. 54, 36-54. doi: 10. 2478/jppr-2014-0006
40. Schmidt, K., Pflugmacher, M., Klages, S., Mäser, A., Mock, A., and Stahl, D. J. (2008). Accumulation of the hormone abscisic acid (ABA) at the infection site of the fungus Cercospora beticola supports the role of ABA as a repressor of plant defence in sugar beet. Mol. Plant Pathol. 9, 661-673. doi: 10. 1111/j. 1364-3703. 2008. 00491. x
41. Slaton, N. A., Cartwright, R. D., Meng, J., Gbur, E. E., and Norman, R. J. (2003). Sheath blight severity and rice yield as affected by nitrogen fertilizer rate, application method, and fungicide. Agron. J. 95, 1489-1496. doi: 10. 2134/agronj2003. 1489
42. Smitha, M. S., and Singh, R. (2014). Biocontrol of phytopathogenic fungi using mycolytic enzymes produced by rhizospheric bacteria of Cicer arietinum. Int. J. Agric. Biochem. 27, 215-218.
43. Srivastava, S., Chaudhry, V., Mishra, A., Chauhan, P. S., Rehman, A., Yadav, A., et al. (2012). Gene expression profiling through microarray analysis in Arabidopsis thaliana colonized by Pseudomonas putida MTCC5279, a plant growth promoting rhizobacterium. Plant Signal. Behav. 7, 235-245. doi: 10. 4161/psb. 18957
44. Suarez, M. B., Sanz, L., Chamorro, M. I., Rey, M., Gonzalez, F. J., Llobell, A., et al. (2005). Proteomic analysis of secreted protease from Trichoderma harzianum. Identification of a fungal cell wall-induced aspartic protease. Fungal Gen. Biol. 42, 924-934. doi: 10. 1016/j. fgb. 2005. 08. 002
45. Sun, Y., Wang, C., Yang, B., Wu, F., Hao, X., Liang, W., et al. (2014). Identification and functional analysis of mitogen-activated protein kinase kinase kinase (MAPKKK) genes in canola (Brassica napus L.). J. Exp. Bot. 65, 2171-2188. doi: 10. 1093/jxb/eru092
46. Tauzin, S. A., and Giardina, T. (2014). Sucrose and invertases, a part of the plant defense response to the biotic stresses. Front. Plant Sci. 5: 293. doi: 10. 3389/fpls. 2014. 00293
47. Tholl, D., Sohrabi, R., Huh, J., and Lee, S. (2011). The biochemistry of homoterpenes common constituents of floral and herbivore-induced plant volatile bouquets. Phytochemistry 72, 1635-1646. doi: 10. 1016/j. phytochem. 2011. 01. 019
48. Ton, J., and Mauch-Mani, B. (2004). Beta-amino-butyric acid-induced resistance against necrotrophic pathogens is based on ABA-dependent priming for callose. Plant J. 38, 119-130. doi: 10. 1111/j. 1365-313X. 2004. 02028. x
49. Tóth, K., and Stacey, G. (2015). Does plant immunity play a critical role during initiation of the legume-rhizobium symbiosis? Front. Plant Sci. 6: 401. doi: 10. 3389/fpls. 2015. 00401
50. Trafford, K., Haleux, P., Henderson, M., Parker, M., Shirley, N. J., Tucker, M. R., et al. (2013). Grain development in Brachypodium and other grasses: possible interactions between cell expansion, starch deposition, and cell-wall synthesis. J. Exp. Bot. 64, 5033-5047. doi: 10. 1093/jxb/ert292
51. Vasudevan, K., Vera-Cruz, C. M., Gruissem, W., and Bhullar, N. K. (2014). Large scale germplasm screening for identification of novel rice blast resistance sources. Front. Plant Sci. 5: 505. doi: 10. 3389/fpls. 2014. 00505
52. Vera, J., Castro, J., Gonzalez, A., and Moenne, A. (2011). Seaweed polysaccharides and derived oligosaccharides stimulate defense responses and protection against pathogens in Plants. Mar. Drugs 9, 2514-2525. doi: 10. 3390/md9122514
53. Wu, Y., and Hu, B. (2009). Simultaneous determination of several phytohormones in natural coconut juice by hollow fiber-based liquid-liquid-liquid microextraction-high performance liquid chromatography. J. Chromat. 1216, 7657-7663. doi: 10. 1016/j. chroma. 2009. 09. 008
54. XiaoXing, L., Ping, L., and Aiping, Z. (2013). In vitro selection of sheath blight resistance germplasm in rice. Afr. J. Microbiol. Res. 7, 4422-4429.
55. Yadav, S., Anuradha, G., Kumar, R. R., Vemireddy, L. R., Sudhakar, R., Donempudi, K., et al. (2015). Identification of QTLs and possible candidate genes conferring sheath blight resistance in rice (Oryza sativa L.). Springer Plus 4: 175. doi: 10. 1186/s40064-015-0954-2
56. Zhang, H., Cui, F., Wu, Y., Lou, L., Liu, L., Tian, M., et al. (2015). The ring finger ubiquitin E3 ligase SDIR1 targets SDIR1-interacting protein1for degradation to modulate the salt stress response and ABA signalling in Arabidopsis. Plant Cell 27, 214-227. doi: 10. 1105/tpc. 114. 134163
57. Zheng, A., Lin, R., Zhang, D., Qin, P., Xu, L., Ai, P., et al. (2013). The evolution and pathogenic mechanisms of the rice sheath blight pathogen. Nat. Commun. 4: 1424. doi: 10. 1038/ncomms2427
58. Zheng, A., and Wang, Y. (2011). The research of infection process and biological characteristics of Rhizoctonia solani AG-1 IB on soybean. J. Yeast Fungal Res. 2, 93-98.