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Volumn 16, Issue 3, 2015, Pages

LncRNA2Function: A comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data

Author keywords

[No Author keywords available]

Indexed keywords

LONG UNTRANSLATED RNA; TRANSCRIPTOME;

EID: 84965186421     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-16-S3-S2     Document Type: Article
Times cited : (115)

References (45)
  • 4
    • 84904253761 scopus 로고    scopus 로고
    • High Expression of CAI2, a 9p21-Embedded Long Noncoding RNA, Contributes to Advanced-Stage Neuroblastoma
    • Barnhill LM, Williams RT, Cohen O, Kim Y, Batova A, Mielke JA, Messer K, Pu M, Bao L, Yu AL, et al: High Expression of CAI2, a 9p21-Embedded Long Noncoding RNA, Contributes to Advanced-Stage Neuroblastoma. Cancer research. 2014, 74 (14): 3753-3763. 10.1158/0008-5472.CAN-13-3447.
    • (2014) Cancer research , vol.74 , Issue.14 , pp. 3753-3763
    • Barnhill, L.M.1    Williams, R.T.2    Cohen, O.3    Kim, Y.4    Batova, A.5    Mielke, J.A.6    Messer, K.7    Pu, M.8    Bao, L.9    Yu, A.L.10
  • 7
    • 60349120914 scopus 로고    scopus 로고
    • Long non-coding RNAs: insights into functions
    • Mercer TR, Dinger ME, Mattick JS: Long non-coding RNAs: insights into functions. Nature reviews Genetics. 2009, 10 (3): 155-159. 10.1038/nrg2521.
    • (2009) Nature reviews Genetics , vol.10 , Issue.3 , pp. 155-159
    • Mercer, T.R.1    Dinger, M.E.2    Mattick, J.S.3
  • 8
    • 80054756754 scopus 로고    scopus 로고
    • Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions
    • Chu C, Qu K, Zhong FL, Artandi SE, Chang HY: Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. Molecular cell. 2011, 44 (4): 667-678. 10.1016/j.molcel.2011.08.027.
    • (2011) Molecular cell , vol.44 , Issue.4 , pp. 667-678
    • Chu, C.1    Qu, K.2    Zhong, F.L.3    Artandi, S.E.4    Chang, H.Y.5
  • 10
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P: Coexpression analysis of human genes across many microarray data sets. Genome research. 2004, 14 (6): 1085-1094. 10.1101/gr.1910904.
    • (2004) Genome research , vol.14 , Issue.6 , pp. 1085-1094
    • Lee, H.K.1    Hsu, A.K.2    Sajdak, J.3    Qin, J.4    Pavlidis, P.5
  • 13
    • 84875417100 scopus 로고    scopus 로고
    • Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks
    • Guo X, Gao L, Liao Q, Xiao H, Ma X, Yang X, Luo H, Zhao G, Bu D, Jiao F, et al: Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks. Nucleic acids research. 2013, 41 (2): e35-10.1093/nar/gks967.
    • (2013) Nucleic acids research , vol.41 , Issue.2 , pp. e35
    • Guo, X.1    Gao, L.2    Liao, Q.3    Xiao, H.4    Ma, X.5    Yang, X.6    Luo, H.7    Zhao, G.8    Bu, D.9    Jiao, F.10
  • 14
    • 79956010263 scopus 로고    scopus 로고
    • Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network
    • Liao Q, Liu C, Yuan X, Kang S, Miao R, Xiao H, Zhao G, Luo H, Bu D, Zhao H, et al: Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. Nucleic acids research. 2011, 39 (9): 3864-3878. 10.1093/nar/gkq1348.
    • (2011) Nucleic acids research , vol.39 , Issue.9 , pp. 3864-3878
    • Liao, Q.1    Liu, C.2    Yuan, X.3    Kang, S.4    Miao, R.5    Xiao, H.6    Zhao, G.7    Luo, H.8    Bu, D.9    Zhao, H.10
  • 18
    • 84876996918 scopus 로고    scopus 로고
    • TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL: TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome biology. 2013, 14 (4): R36-10.1186/gb-2013-14-4-r36.
    • (2013) Genome biology , vol.14 , Issue.4 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 20
    • 0035733108 scopus 로고    scopus 로고
    • the control of false discovery rate in multiple testing under dependency
    • Benjamini YaY D: the control of false discovery rate in multiple testing under dependency. Ann Stat. 2001, 29: 1165-1168. 10.1214/aos/1013699998.
    • (2001) Ann Stat , vol.29 , pp. 1165-1168
    • Benjamini YaY, D.1
  • 21
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing.
    • Benjamini Y, Hochberg Y: Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B. 1995, 289-300. 57
    • (1995) Journal of the Royal Statistical Society Series B. , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 22
    • 33847335554 scopus 로고    scopus 로고
    • Controlling the false discovery rate with constraints: the Newman-Keuls test revisited
    • Shaffer JP: Controlling the false discovery rate with constraints: the Newman-Keuls test revisited. Biom J. 2007, 49: 136-143. 10.1002/bimj.200610297.
    • (2007) Biom J , vol.49 , pp. 136-143
    • Shaffer, J.P.1
  • 23
    • 84864126183 scopus 로고    scopus 로고
    • Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease
    • Qureshi IA, Mehler MF: Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease. Nature reviews Neuroscience. 2012, 13 (8): 528-541. 10.1038/nrn3234.
    • (2012) Nature reviews Neuroscience , vol.13 , Issue.8 , pp. 528-541
    • Qureshi, I.A.1    Mehler, M.F.2
  • 24
    • 84255160602 scopus 로고    scopus 로고
    • Long noncoding RNA-mediated anti-apoptotic activity in murine erythroid terminal differentiation
    • Hu W, Yuan B, Flygare J, Lodish HF: Long noncoding RNA-mediated anti-apoptotic activity in murine erythroid terminal differentiation. Genes & development. 2011, 25 (24): 2573-2578. 10.1101/gad.178780.111.
    • (2011) Genes & development , vol.25 , Issue.24 , pp. 2573-2578
    • Hu, W.1    Yuan, B.2    Flygare, J.3    Lodish, H.F.4
  • 32
    • 77956542998 scopus 로고    scopus 로고
    • CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer
    • Wang J, Liu X, Wu H, Ni P, Gu Z, Qiao Y, Chen N, Sun F, Fan Q: CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer. Nucleic acids research. 2010, 38 (16): 5366-5383. 10.1093/nar/gkq285.
    • (2010) Nucleic acids research , vol.38 , Issue.16 , pp. 5366-5383
    • Wang, J.1    Liu, X.2    Wu, H.3    Ni, P.4    Gu, Z.5    Qiao, Y.6    Chen, N.7    Sun, F.8    Fan, Q.9
  • 38
    • 0030053512 scopus 로고    scopus 로고
    • High incidence of loss of heterozygosity and abnormal imprinting of H19 and IGF2 genes in invasive cervical carcinomas. Uncoupling of H19 and IGF2 expression and biallelic hypomethylation of H19
    • Douc-Rasy S, Barrois M, Fogel S, Ahomadegbe JC, Stehelin D, Coll J, Riou G: High incidence of loss of heterozygosity and abnormal imprinting of H19 and IGF2 genes in invasive cervical carcinomas. Uncoupling of H19 and IGF2 expression and biallelic hypomethylation of H19. Oncogene. 1996, 12 (2): 423-430.
    • (1996) Oncogene , vol.12 , Issue.2 , pp. 423-430
    • Douc-Rasy, S.1    Barrois, M.2    Fogel, S.3    Ahomadegbe, J.C.4    Stehelin, D.5    Coll, J.6    Riou, G.7
  • 39
    • 78651375982 scopus 로고    scopus 로고
    • Retrotransposon-specific DNA hypomethylation and two-step loss-of-imprinting during WW45 haploinsufficiency-induced hepatocarcinogenesis
    • Song JY, Lee JH, Joe CO, Lim DS, Chung JH: Retrotransposon-specific DNA hypomethylation and two-step loss-of-imprinting during WW45 haploinsufficiency-induced hepatocarcinogenesis. Biochemical and biophysical research communications. 2011, 404 (2): 728-734. 10.1016/j.bbrc.2010.12.052.
    • (2011) Biochemical and biophysical research communications , vol.404 , Issue.2 , pp. 728-734
    • Song, J.Y.1    Lee, J.H.2    Joe, C.O.3    Lim, D.S.4    Chung, J.H.5
  • 42
    • 63449087026 scopus 로고    scopus 로고
    • New genomic structure for prostate cancer specific gene PCA3 within BMCC1: implications for prostate cancer detection and progression
    • Clarke RA, Zhao Z, Guo AY, Roper K, Teng L, Fang ZM, Samaratunga H, Lavin MF, Gardiner RA: New genomic structure for prostate cancer specific gene PCA3 within BMCC1: implications for prostate cancer detection and progression. PloS one. 2009, 4 (3): e4995-10.1371/journal.pone.0004995.
    • (2009) PloS one , vol.4 , Issue.3 , pp. e4995
    • Clarke, R.A.1    Zhao, Z.2    Guo, A.Y.3    Roper, K.4    Teng, L.5    Fang, Z.M.6    Samaratunga, H.7    Lavin, M.F.8    Gardiner, R.A.9
  • 44
    • 3142540904 scopus 로고    scopus 로고
    • DD3PCA3 RNA analysis in urine--a new perspective for detecting prostate cancer
    • Tinzl M, Marberger M, Horvath S, Chypre C: DD3PCA3 RNA analysis in urine--a new perspective for detecting prostate cancer. European urology. 2004, 46 (2): 182-186. 10.1016/j.eururo.2004.06.004. discussion 187
    • (2004) European urology , vol.46 , Issue.2 , pp. 182-186
    • Tinzl, M.1    Marberger, M.2    Horvath, S.3    Chypre, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.