메뉴 건너뛰기




Volumn 43, Issue 14, 2015, Pages

Synthesis of 2′-fluoro RNA by Syn5 RNA polymerase

Author keywords

[No Author keywords available]

Indexed keywords

MAGNESIUM ION; MANGANESE; PHENYLALANINE; RNA POLYMERASE; SYN5 PROTEIN; TYROSINE; UNCLASSIFIED DRUG; DEOXYRIBONUCLEOTIDE; DNA DIRECTED RNA POLYMERASE; FLUORINE; RNA;

EID: 84965086167     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv367     Document Type: Article
Times cited : (27)

References (26)
  • 4
    • 0242409220 scopus 로고    scopus 로고
    • Neutralization of infectivity of diverse R5 clinical isolates of human immunodeficiency virus type 1 by gp120-binding 2′F-RNA aptamers
    • Khati, M., Schüman, M., Ibrahim, J., Sattentau, Q., Gordon, S. and James, W. (2003) Neutralization of infectivity of diverse R5 clinical isolates of human immunodeficiency virus type 1 by gp120-binding 2′F-RNA aptamers. J. Virol., 77, 12 692-12 698.
    • (2003) J. Virol. , vol.77 , pp. 12692-12698
    • Khati, M.1    Schüman, M.2    Ibrahim, J.3    Sattentau, Q.4    Gordon, S.5    James, W.6
  • 5
    • 0041331496 scopus 로고    scopus 로고
    • SiRNA function in RNAi: A chemical modification analysis
    • Chiu, Y.L. and Rana, T.M. (2003) siRNA function in RNAi: a chemical modification analysis. RNA, 9, 1034-1048.
    • (2003) RNA , vol.9 , pp. 1034-1048
    • Chiu, Y.L.1    Rana, T.M.2
  • 6
    • 0035872208 scopus 로고    scopus 로고
    • Hybridization of 2′-ribose modified mixed-sequence oligonucleotides: Thermodynamic and kinetic studies
    • Sabahi, A., Guidry, J., Inamati, G.B., Manoharan, M. and Wittung-Stafshede, P. (2001) Hybridization of 2′-ribose modified mixed-sequence oligonucleotides: thermodynamic and kinetic studies. Nucleic Acids Res., 29, 2163-2170.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2163-2170
    • Sabahi, A.1    Guidry, J.2    Inamati, G.B.3    Manoharan, M.4    Wittung-Stafshede, P.5
  • 7
    • 0032493654 scopus 로고    scopus 로고
    • 2′-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain
    • Ruckman, J., Green, L.S., Beeson, J., Waugh, S., Gillette, W.L., Henninger, D.D., Claesson-Welsh, L. and Janjić, N. (1998) 2′-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain. J. Biol. Chem., 273, 20556-20567.
    • (1998) J. Biol. Chem. , vol.273 , pp. 20556-20567
    • Ruckman, J.1    Green, L.S.2    Beeson, J.3    Waugh, S.4    Gillette, W.L.5    Henninger, D.D.6    Claesson-Welsh, L.7    Janjić, N.8
  • 8
    • 0026337408 scopus 로고
    • Kinetic characterization of ribonuclease-resistant 2′-modified hammerhead ribozymes
    • Pieken, W.A., Olsen, D.B., Benseler, F., Aurup, H. and Eckstein, F. (1991) Kinetic characterization of ribonuclease-resistant 2′-modified hammerhead ribozymes. Science, 253, 314-317.
    • (1991) Science , vol.253 , pp. 314-317
    • Pieken, W.A.1    Olsen, D.B.2    Benseler, F.3    Aurup, H.4    Eckstein, F.5
  • 9
    • 80052710778 scopus 로고    scopus 로고
    • Bovine pancreatic ribonuclease: Fifty years of the first enzymatic reaction mechanism
    • Cuchillo, C.M., Nogués, M.V. and Raines, R.T. (2011) Bovine pancreatic ribonuclease: fifty years of the first enzymatic reaction mechanism. Biochemistry, 50, 7835-7841.
    • (2011) Biochemistry , vol.50 , pp. 7835-7841
    • Cuchillo, C.M.1    Nogués, M.V.2    Raines, R.T.3
  • 10
    • 0030825878 scopus 로고    scopus 로고
    • 2′-Fluoro modified nucleic acids: Polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry
    • Ono, T., Scalf, M. and Smith, L.M. (1997) 2′-Fluoro modified nucleic acids: polymerase-directed synthesis, properties and stability to analysis by matrix-assisted laser desorption/ionization mass spectrometry. Nucleic Acids Res., 25, 4581-4588.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4581-4588
    • Ono, T.1    Scalf, M.2    Smith, L.M.3
  • 11
    • 84921963336 scopus 로고    scopus 로고
    • Highly stable aptamers selected from a 20-fully modified fGmH RNA library for targeting biomaterials
    • Friedman, A.D., Kim, D. and Liu, R. (2015) Highly stable aptamers selected from a 20-fully modified fGmH RNA library for targeting biomaterials. Biomaterials, 36, 110-123.
    • (2015) Biomaterials , vol.36 , pp. 110-123
    • Friedman, A.D.1    Kim, D.2    Liu, R.3
  • 13
    • 0029091457 scopus 로고
    • A mutant T7 RNA polymerase as a DNA polymerase
    • Sousa, R. and Padilla, R. (1995) A mutant T7 RNA polymerase as a DNA polymerase. EMBO J., 14, 4609-4621.
    • (1995) EMBO J. , vol.14 , pp. 4609-4621
    • Sousa, R.1    Padilla, R.2
  • 14
    • 0033559119 scopus 로고    scopus 로고
    • Efficient synthesis of nucleic acids heavily modified with non-canonical ribose 2′-groups using a mutantT7 RNA polymerase (RNAP)
    • Padilla, R. and Sousa, R. (1999) Efficient synthesis of nucleic acids heavily modified with non-canonical ribose 2′-groups using a mutantT7 RNA polymerase (RNAP). Nucleic Acids Res., 27, 1561-1563.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1561-1563
    • Padilla, R.1    Sousa, R.2
  • 16
    • 84898998425 scopus 로고    scopus 로고
    • Syn5 RNA polymerase synthesizes precise run-off RNA products
    • Zhu, B., Tabor, S. and Richardson, C.C. (2014) Syn5 RNA polymerase synthesizes precise run-off RNA products. Nucleic Acids Res. 42, e33.
    • (2014) Nucleic Acids Res. , vol.42 , pp. e33
    • Zhu, B.1    Tabor, S.2    Richardson, C.C.3
  • 17
    • 70549112913 scopus 로고    scopus 로고
    • The structural changes of T7 RNA polymerase from transcription initiation to elongation
    • Steitz, T.A. (2009) The structural changes of T7 RNA polymerase from transcription initiation to elongation. Curr. Opin. Struct. Biol., 19, 683-690.
    • (2009) Curr. Opin. Struct. Biol. , vol.19 , pp. 683-690
    • Steitz, T.A.1
  • 18
    • 0035803474 scopus 로고    scopus 로고
    • T7 promoter release mediated by DNA scrunching
    • Brieba, L.G. and Sousa, R. (2001) T7 promoter release mediated by DNA scrunching. EMBO J., 20, 6826-6835.
    • (2001) EMBO J. , vol.20 , pp. 6826-6835
    • Brieba, L.G.1    Sousa, R.2
  • 19
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • Milligan, J.F., Groebe, D.R., Witherell, G.W. and Uhlenbeck, O.C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res., 15, 8783-8798.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 20
    • 34147098884 scopus 로고    scopus 로고
    • Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: A "horned" bacteriophage of marine synechococcus
    • Pope, W.H., Weigele, P.R., Chang, J., Pedulla, M.L., Ford, M.E., Houtz, J.M., Jiang, W., Chiu, W., Hatfull, G.F., Hendrix, R.W. et al. (2007) Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine synechococcus. J. Mol. Biol., 368, 966-981.
    • (2007) J. Mol. Biol. , vol.368 , pp. 966-981
    • Pope, W.H.1    Weigele, P.R.2    Chang, J.3    Pedulla, M.L.4    Ford, M.E.5    Houtz, J.M.6    Jiang, W.7    Chiu, W.8    Hatfull, G.F.9    Hendrix, R.W.10
  • 21
    • 0024819449 scopus 로고
    • Synthesis of small RNAs using T7 RNA polymerase
    • Milligan, J.F. and Uhlenbeck, O.C. (1989) Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol., 180, 51-62.
    • (1989) Methods Enzymol. , vol.180 , pp. 51-62
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 22
    • 0006962619 scopus 로고
    • Effect of manganese ions on the incorporation of dideoxynucleotides by bacteriophage T7 DNA polymerase and Escherichia coli DNA polymerase i
    • Tabor, S. and Richardson, C.C. (1989) Effect of manganese ions on the incorporation of dideoxynucleotides by bacteriophage T7 DNA polymerase and Escherichia coli DNA polymerase I. Proc. Natl. Acad. Sci. U.S.A., 86, 4076-4080.
    • (1989) Proc. Natl. Acad. Sci. U.S.A. , vol.86 , pp. 4076-4080
    • Tabor, S.1    Richardson, C.C.2
  • 23
    • 7044251795 scopus 로고    scopus 로고
    • Template-dependent incorporation of 8-N3AMP into RNA with bacteriophage T7 RNA polymerase
    • Gopalakrishna, S., Gusti, V., Nair, S., Sahar, S. and Gaur, R.K. (2004) Template-dependent incorporation of 8-N3AMP into RNA with bacteriophage T7 RNA polymerase. RNA, 10, 1820-1830.
    • (2004) RNA , vol.10 , pp. 1820-1830
    • Gopalakrishna, S.1    Gusti, V.2    Nair, S.3    Sahar, S.4    Gaur, R.K.5
  • 24
    • 84867453498 scopus 로고    scopus 로고
    • Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs
    • Afonin, K.A., Kireeva, M., Grabow, W.W., Kashlev, M., Jaeger, L. and Shapiro, B.A. (2012) Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs. Nano Lett., 12, 5192-5195.
    • (2012) Nano Lett. , vol.12 , pp. 5192-5195
    • Afonin, K.A.1    Kireeva, M.2    Grabow, W.W.3    Kashlev, M.4    Jaeger, L.5    Shapiro, B.A.6
  • 25
    • 2242482888 scopus 로고    scopus 로고
    • A light-dependent mechanism for massive accumulation of manganese in the photosynthetic bacterium Synechocystis sp. PCC 6803
    • Keren, N., Kidd, M.J., Penner-Hahn, J.E. and Pakrasi, H.B. (2002) A light-dependent mechanism for massive accumulation of manganese in the photosynthetic bacterium Synechocystis sp. PCC 6803. Biochemistry, 41, 15 085-15 092.
    • (2002) Biochemistry , vol.41 , pp. 15085-15092
    • Keren, N.1    Kidd, M.J.2    Penner-Hahn, J.E.3    Pakrasi, H.B.4
  • 26
    • 84872376390 scopus 로고    scopus 로고
    • Comparative study of cyanobacterial and E. Coli RNA polymerases: Misincorporation, abortive transcription, and dependence on divalent cations
    • Imashimizu, M., Tanaka, K. and Shimamoto, N. (2011) Comparative study of cyanobacterial and E. coli RNA polymerases: misincorporation, abortive transcription, and dependence on divalent cations. Genet. Res. Int. 2011, 572689.
    • (2011) Genet. Res. Int. , vol.2011 , pp. 572689
    • Imashimizu, M.1    Tanaka, K.2    Shimamoto, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.