메뉴 건너뛰기




Volumn 29, Issue 10, 2001, Pages 2163-2170

Hybridization of 2′-ribose modified mixed-sequence oligonucleotides: Thermodynamic and kinetic studies

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; COMPLEMENTARY RNA; DNA; DOUBLE STRANDED DNA; OLIGONUCLEOTIDE; RIBOSE; RNA;

EID: 0035872208     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.10.2163     Document Type: Article
Times cited : (33)

References (31)
  • 1
    • 0027711598 scopus 로고
    • Oligonucleotide analogs containing dephospho-internucleoside linkages
    • Uhlmann, E. and Peyman, A. (1993) Oligonucleotide analogs containing dephospho-internucleoside linkages. Methods Mol. Biol., 20, 355-389.
    • (1993) Methods Mol. Biol. , vol.20 , pp. 355-389
    • Uhlmann, E.1    Peyman, A.2
  • 2
    • 0025941284 scopus 로고
    • Sequence-selective DNA recognition by synthetic ligands
    • Nielsen, P.E. (1991) Sequence-selective DNA recognition by synthetic ligands. Bioconjug. Chem., 2, 1-12.
    • (1991) Bioconjug. Chem. , vol.2 , pp. 1-12
    • Nielsen, P.E.1
  • 3
    • 0041582974 scopus 로고
    • Inhibition of Rous sarcoma virus replication and cell transformation by a specific oligodeoxynucleotide
    • Zamecnik, P.C. and Stephenson, M.L. (1978) Inhibition of Rous sarcoma virus replication and cell transformation by a specific oligodeoxynucleotide. Proc. Natl Acad. Sci. USA, 75, 280-284.
    • (1978) Proc. Natl Acad. Sci. USA , vol.75 , pp. 280-284
    • Zamecnik, P.C.1    Stephenson, M.L.2
  • 4
    • 0033990403 scopus 로고    scopus 로고
    • Progress in antisense technology: The end of the beginning
    • Crooke, S.T. (2000) Progress in antisense technology: the end of the beginning. Methods Enzymol., 313, 3-45.
    • (2000) Methods Enzymol. , vol.313 , pp. 3-45
    • Crooke, S.T.1
  • 6
    • 0027254030 scopus 로고
    • Antisense oligonucleotides made of 2'-O-alkyl RNA: Their properties and applications in RNA biochemistry
    • Lamond, A.I. and Sproat, B.S. (1993) Antisense oligonucleotides made of 2'-O-alkyl RNA: their properties and applications in RNA biochemistry. FEBS Lett., 325, 123-127.
    • (1993) FEBS Lett. , vol.325 , pp. 123-127
    • Lamond, A.I.1    Sproat, B.S.2
  • 8
    • 0033517730 scopus 로고    scopus 로고
    • Triplex formation of chemically modified homopyrimidine oligonucleotides: Thermodynamic and kinetic studies
    • Torigoe, H., Shimizume, R., Sarai, A. and Shindo, H. (1999) Triplex formation of chemically modified homopyrimidine oligonucleotides: thermodynamic and kinetic studies. Biochemistry, 38, 14653-14659.
    • (1999) Biochemistry , vol.38 , pp. 14653-14659
    • Torigoe, H.1    Shimizume, R.2    Sarai, A.3    Shindo, H.4
  • 9
    • 0028908157 scopus 로고
    • Relative stabilities of triple helices composed of combinations of DNA, RNA and 2'-O-methyl-RNA backbones: Chimeric circular oligonucleotides as probes
    • Wang, S. and Kool, E.T. (1995) Relative stabilities of triple helices composed of combinations of DNA, RNA and 2'-O-methyl-RNA backbones: chimeric circular oligonucleotides as probes. Nucleic Acids Res., 23, 1157-1164.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1157-1164
    • Wang, S.1    Kool, E.T.2
  • 10
    • 0032750621 scopus 로고    scopus 로고
    • 2'-carbohydrate modifications in antisense oligonucleotide therapy: Importance of conformation, configuration and conjugation
    • Manoharan, M. (1999) 2'-carbohydrate modifications in antisense oligonucleotide therapy: importance of conformation, configuration and conjugation. Biochim. Biophys. Acta, 1489, 117-130.
    • (1999) Biochim. Biophys. Acta , vol.1489 , pp. 117-130
    • Manoharan, M.1
  • 11
    • 0030727765 scopus 로고    scopus 로고
    • The ups and downs of nucleic acid duplex stability: Structure-stability studies on chemically-modified DNA:RNA duplexes
    • Freier, S.M. and Altmann, K.H. (1997) The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexes. Nucleic Acids Res., 25, 4429-4443.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4429-4443
    • Freier, S.M.1    Altmann, K.H.2
  • 12
    • 0027479864 scopus 로고
    • Uniformly modified 2'-deoxy-2'-fluoro phosphorothioate oligonucleotides as nuclease-resistant antisense compounds with high affinity and specificity for RNA targets
    • Kawasaki, A.M., Casper, M.D., Freier, S.M., Lesnik, E.A., Zounes, M.C., Cummins, L.L., Gonzalez, C. and Cook, P.D. (1993) Uniformly modified 2'-deoxy-2'-fluoro phosphorothioate oligonucleotides as nuclease-resistant antisense compounds with high affinity and specificity for RNA targets. J. Med. Chem., 36, 831-841.
    • (1993) J. Med. Chem. , vol.36 , pp. 831-841
    • Kawasaki, A.M.1    Casper, M.D.2    Freier, S.M.3    Lesnik, E.A.4    Zounes, M.C.5    Cummins, L.L.6    Gonzalez, C.7    Cook, P.D.8
  • 14
    • 0026323898 scopus 로고
    • Synthesis and biophysical and biological evaluation of 2'-modified antisense oligonucleotides
    • Guinosso, C., Hoke, G., Frier, S., Martin, J., Ecker, D., Mirabelli, C., Crooke, S. and Cook, P. (1991) Synthesis and biophysical and biological evaluation of 2'-modified antisense oligonucleotides. Nucl. Nucl., 10, 259-262.
    • (1991) Nucl. Nucl. , vol.10 , pp. 259-262
    • Guinosso, C.1    Hoke, G.2    Frier, S.3    Martin, J.4    Ecker, D.5    Mirabelli, C.6    Crooke, S.7    Cook, P.8
  • 15
    • 0029955524 scopus 로고    scopus 로고
    • Stereoselective synthesis of 2'-O-(2-methoxyethyl)ribonucleosides
    • Martin, P. (1996) Stereoselective synthesis of 2'-O-(2-methoxyethyl)ribonucleosides. Helv. Chim. Acta, 79, 1930-1938.
    • (1996) Helv. Chim. Acta , vol.79 , pp. 1930-1938
    • Martin, P.1
  • 16
    • 0030463954 scopus 로고    scopus 로고
    • 2'-O-aminopropyl ribonucleotides: A zwitterionic modification that enhances the exonuclease resistance and biological activity of antisense oligonucleotides
    • Griffey, R.H., Monia, B.P., Cummins, L.L., Freier, S., Greig, M.J., Guinosso, C.J., Lesnik, E., Manalili, S.M., Mohan, V., Owens, S. et al. (1996) 2'-O-aminopropyl ribonucleotides: a zwitterionic modification that enhances the exonuclease resistance and biological activity of antisense oligonucleotides. J. Med. Chem., 39, 5100-5109.
    • (1996) J. Med. Chem. , vol.39 , pp. 5100-5109
    • Griffey, R.H.1    Monia, B.P.2    Cummins, L.L.3    Freier, S.4    Greig, M.J.5    Guinosso, C.J.6    Lesnik, E.7    Manalili, S.M.8    Mohan, V.9    Owens, S.10
  • 19
    • 0030463954 scopus 로고    scopus 로고
    • 2'-O-aminopropyl ribonucleotides: A zwitterionic modification that enhances the exonuclease resistance and biological activity of antisense oligonucleotides
    • Griffey, R.H., Monia, B.P., Cummins, L.L., Freier, S., Greig, M.J., Guinosso, C.J., Lesnik, E., Manalili, S.M., Mohan, V., Owens, S. et al. (1996) 2'-O-aminopropyl ribonucleotides: a zwitterionic modification that enhances the exonuclease resistance and biological activity of antisense oligonucleotides. J. Med. Chem., 39, 5100-5109.
    • (1996) J. Med. Chem. , vol.39 , pp. 5100-5109
    • Griffey, R.H.1    Monia, B.P.2    Cummins, L.L.3    Freier, S.4    Greig, M.J.5    Guinosso, C.J.6    Lesnik, E.7    Manalili, S.M.8    Mohan, V.9    Owens, S.10
  • 21
    • 0013769174 scopus 로고
    • Theory of the effects of concentration and chain length on helix-coil equilibria in two-stranded nucleic acids
    • Applequist, J. and Damle, V. (1963) Theory of the effects of concentration and chain length on helix-coil equilibria in two-stranded nucleic acids. J. Chem. Phys., 39, 2719-2721.
    • (1963) J. Chem. Phys. , vol.39 , pp. 2719-2721
    • Applequist, J.1    Damle, V.2
  • 22
    • 0024804759 scopus 로고
    • Absorbance melting curves of RNA
    • Puglisi, J.D. and Tinoco, I.,Jr (1989) Absorbance melting curves of RNA. Methods Enzymol., 180, 304-325.
    • (1989) Methods Enzymol. , vol.180 , pp. 304-325
    • Puglisi, J.D.1    Tinoco I., Jr.2
  • 23
    • 0029121625 scopus 로고
    • Relative thermodynamic stability of DNA, RNA and DNA:RNA hybrid duplexes: Relationship with base composition and structure
    • Lesnik, E.A. and Freier, S.M. (1995) Relative thermodynamic stability of DNA, RNA and DNA:RNA hybrid duplexes: relationship with base composition and structure. Biochemistry, 34, 10807-10815.
    • (1995) Biochemistry , vol.34 , pp. 10807-10815
    • Lesnik, E.A.1    Freier, S.M.2
  • 25
    • 0027469785 scopus 로고
    • Sensitive fluorescence-based lhermodynamic and kinetic measurements of DNA hybridization in solution
    • Morrison, L.E. and Stols, L.M. (1993) Sensitive fluorescence-based lhermodynamic and kinetic measurements of DNA hybridization in solution. Biochemistry, 32, 3095-3104.
    • (1993) Biochemistry , vol.32 , pp. 3095-3104
    • Morrison, L.E.1    Stols, L.M.2
  • 27
    • 0023201684 scopus 로고
    • Stereochemical features controlling binding and intrinsic activity properties of benzodiazepine-receptor ligands
    • Borea, P.A., Gilli, G., Bertolasi, V. and Ferretti, V. (1987) Stereochemical features controlling binding and intrinsic activity properties of benzodiazepine-receptor ligands. Mol. Pharmacol., 31, 334-344.
    • (1987) Mol. Pharmacol. , vol.31 , pp. 334-344
    • Borea, P.A.1    Gilli, G.2    Bertolasi, V.3    Ferretti, V.4
  • 28
    • 0342618762 scopus 로고    scopus 로고
    • Kinetics for hybridization of peptide nucleic acids (PNA) with DNA and RNA studied with the BlAcore technique
    • Jensen, K.K., Orum, H., Nielsen, P.E. and Norden, B. (1997) Kinetics for hybridization of peptide nucleic acids (PNA) with DNA and RNA studied with the BlAcore technique. Biochemistry, 36, 5072-5077.
    • (1997) Biochemistry , vol.36 , pp. 5072-5077
    • Jensen, K.K.1    Orum, H.2    Nielsen, P.E.3    Norden, B.4
  • 29
    • 0026621339 scopus 로고
    • Implication of RNA structure on antisense oligonucleotide hybridization kinetics
    • Lima, W.F., Monia, B.P., Ecker, D.J. and Freier, S.M. (1992) Implication of RNA structure on antisense oligonucleotide hybridization kinetics. Biochemistry, 31, 12055-12061.
    • (1992) Biochemistry , vol.31 , pp. 12055-12061
    • Lima, W.F.1    Monia, B.P.2    Ecker, D.J.3    Freier, S.M.4
  • 31
    • 1542606746 scopus 로고    scopus 로고
    • Kinetic measurements of DNA hybridization on an oligonucleotide-immobilized 27-MHz quartz crystal microbalance
    • Okahata, Y., Kawase, M., Niikura, K., Ohtake, F., Furusawa, H. and Ebara, Y. (1998) Kinetic measurements of DNA hybridization on an oligonucleotide-immobilized 27-MHz quartz crystal microbalance. Anal. Chem., 70, 1288-1296.
    • (1998) Anal. Chem. , vol.70 , pp. 1288-1296
    • Okahata, Y.1    Kawase, M.2    Niikura, K.3    Ohtake, F.4    Furusawa, H.5    Ebara, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.