-
1
-
-
84875692043
-
MODOMICS: A database of RNA modification pathways-2013 update
-
Machnicka, M. A., et al. MODOMICS: a database of RNA modification pathways-2013 update. Nucleic Acids Res. 41, D262-D267 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D262-D267
-
-
Machnicka, M.A.1
-
2
-
-
84860779086
-
Topology of the human and mouse m6A RNA methylomes revealed by m6A seq
-
Dominissini, D., et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A seq. Nature 485, 201-206 (2012).
-
(2012)
Nature
, vol.485
, pp. 201-206
-
-
Dominissini, D.1
-
3
-
-
84862649489
-
Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons
-
Meyer, K. D., et al. Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons. Cell 149, 1635-1646 (2012).
-
(2012)
Cell
, vol.149
, pp. 1635-1646
-
-
Meyer, K.D.1
-
4
-
-
84860751168
-
Widespread occurrence of 5 methylcytosine in human coding and non-coding RNA
-
Squires, J. E., et al. Widespread occurrence of 5 methylcytosine in human coding and non-coding RNA. Nucleic Acids Res. 40, 5023-5033 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 5023-5033
-
-
Squires, J.E.1
-
5
-
-
84922180958
-
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
-
Carlile, T. M., et al. Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells. Nature 515, 143-146 (2014).
-
(2014)
Nature
, vol.515
, pp. 143-146
-
-
Carlile, T.M.1
-
6
-
-
84907527348
-
Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA
-
Schwartz, S., et al. Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA. Cell 159, 148-162 (2014).
-
(2014)
Cell
, vol.159
, pp. 148-162
-
-
Schwartz, S.1
-
7
-
-
84938417580
-
Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome
-
Linder, B., et al. Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome. Nat. Methods 12, 767-772 (2015).
-
(2015)
Nat. Methods
, vol.12
, pp. 767-772
-
-
Linder, B.1
-
8
-
-
84946228509
-
5' UTR m6A promotes cap-independent translation
-
Meyer, K. D., et al. 5' UTR m6A promotes cap-independent translation. Cell 163, 999-1010 (2015).
-
(2015)
Cell
, vol.163
, pp. 999-1010
-
-
Meyer, K.D.1
-
10
-
-
3543004084
-
Systematic identification of abundant A to i editing sites in the human transcriptome
-
Levanon, E. Y., et al. Systematic identification of abundant A to I editing sites in the human transcriptome. Nat. Biotechnol. 22, 1001-1005 (2004).
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1001-1005
-
-
Levanon, E.Y.1
-
11
-
-
84898814417
-
Gene expression regulation mediated through reversible m6A RNA methylation
-
Fu, Y., Dominissini, D., Rechavi, G., & He, C. Gene expression regulation mediated through reversible m6A RNA methylation. Nat. Rev. Genet. 15, 293-306 (2014).
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 293-306
-
-
Fu, Y.1
Dominissini, D.2
Rechavi, G.3
He, C.4
-
12
-
-
84899586607
-
The dynamic epitranscriptome: N6 methyladenosine and gene expression control
-
Meyer, K. D., & Jaffrey, S. R. The dynamic epitranscriptome: N6 methyladenosine and gene expression control. Nat. Rev. Mol. Cell Biol. 15, 313-326 (2014).
-
(2014)
Nat. Rev. Mol. Cell Biol.
, vol.15
, pp. 313-326
-
-
Meyer, K.D.1
Jaffrey, S.R.2
-
13
-
-
84892372347
-
N6 methyladenosine-dependent regulation of messenger RNA stability
-
Wang, X., et al. N6 methyladenosine-dependent regulation of messenger RNA stability. Nature 505, 117-120 (2014).
-
(2014)
Nature
, vol.505
, pp. 117-120
-
-
Wang, X.1
-
14
-
-
81355146483
-
N6 methyladenosine in nuclear RNA is a major substrate of the obesity-Associated FTO
-
Jia, G., et al. N6 methyladenosine in nuclear RNA is a major substrate of the obesity-Associated FTO. Nat. Chem. Biol. 7, 885-887 (2011).
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 885-887
-
-
Jia, G.1
-
15
-
-
84959386536
-
The dynamic N1 methyladenosine methylome in eukaryotic messenger RNA
-
Dominissini, D., et al The dynamic N1 methyladenosine methylome in eukaryotic messenger RNA Nature 530, 441-446 (2016).
-
(2016)
Nature
, vol.530
, pp. 441-446
-
-
Dominissini, D.1
-
16
-
-
84941424170
-
HNRNPA2B1 is a mediator of m6A dependent nuclear RNA processing events
-
Alarcón, C. R., et al. HNRNPA2B1 is a mediator of m6A dependent nuclear RNA processing events. Cell 162, 1299-1308 (2015).
-
(2015)
Cell
, vol.162
, pp. 1299-1308
-
-
Alarcón, C.R.1
-
17
-
-
84924072927
-
N6-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions
-
Liu, N., et al. N6-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions. Nature 518, 560-564 (2015).
-
(2015)
Nature
, vol.518
, pp. 560-564
-
-
Liu, N.1
-
18
-
-
84868207785
-
Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type i interferon signature
-
Rice, G. I., et al. Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature. Nat. Genet. 44, 1243-1248 (2012).
-
(2012)
Nat. Genet.
, vol.44
, pp. 1243-1248
-
-
Rice, G.I.1
-
19
-
-
84919457819
-
M6A RNA modification controls cell fate transition in mammalian embryonic stem cells
-
Batista, P. J., et al. m6A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell 15, 707-719 (2014).
-
(2014)
Cell Stem Cell
, vol.15
, pp. 707-719
-
-
Batista, P.J.1
-
20
-
-
84922342926
-
M6A mRNA methylation facilitates resolution of naive pluripotency toward differentiation
-
Geula, S., et al. m6A mRNA methylation facilitates resolution of naive pluripotency toward differentiation. Science 347, 1002-1006 (2015).
-
(2015)
Science
, vol.347
, pp. 1002-1006
-
-
Geula, S.1
-
21
-
-
80755168383
-
Adenosine-To inosine RNA editing meets cancer
-
Dominissini, D., Moshitch-Moshkovitz, S., Amariglio, N., & Rechavi, G. Adenosine-To inosine RNA editing meets cancer. Carcinogenesis. 32, 1569-1577 (2011).
-
(2011)
Carcinogenesis.
, vol.32
, pp. 1569-1577
-
-
Dominissini, D.1
Moshitch-Moshkovitz, S.2
Amariglio, N.3
Rechavi, G.4
-
22
-
-
84959540513
-
RNA epigenetics-chemical messages for posttranscriptional gene regulation
-
Roundtree, I. A., & He, C. RNA epigenetics-chemical messages for posttranscriptional gene regulation. Curr. Opin. Chem. Biol. 30, 46-51 (2016).
-
(2016)
Curr. Opin. Chem. Biol.
, vol.30
, pp. 46-51
-
-
Roundtree, I.A.1
He, C.2
-
23
-
-
84959441309
-
Epigenetics: A new methyl mark on messengers
-
Kietrys, A. M., & Kool, E. T. Epigenetics: a new methyl mark on messengers. Nature 530, 423-424 (2016).
-
(2016)
Nature
, vol.530
, pp. 423-424
-
-
Kietrys, A.M.1
Kool, E.T.2
-
24
-
-
84942293253
-
Transcriptome-wide dynamics of RNA pseudouridylation
-
Karijolich, J., Yi, C., & Yu, Y. T. Transcriptome-wide dynamics of RNA pseudouridylation. Nat. Rev. Mol. Cell Biol. 16, 581-585 (2015).
-
(2015)
Nat. Rev. Mol. Cell Biol.
, vol.16
, pp. 581-585
-
-
Karijolich, J.1
Yi, C.2
Yu, Y.T.3
-
25
-
-
84953639032
-
The emerging epitranscriptomics of long noncoding RNAs
-
Shafik, A., Schumann, U., Evers, M., Sibbritt, T., & Preiss, T. The emerging epitranscriptomics of long noncoding RNAs. Biochim. Biophys. Acta 1859, 59-70 (2016).
-
(2016)
Biochim. Biophys. Acta
, vol.1859
, pp. 59-70
-
-
Shafik, A.1
Schumann, U.2
Evers, M.3
Sibbritt, T.4
Preiss, T.5
-
26
-
-
84901601146
-
Role of tRNA modifications in human diseases
-
Torres, A. G., Batlle, E., & Ribas de Pouplana, L. Role of tRNA modifications in human diseases. Trends Mol. Med. 20, 306-314 (2014).
-
(2014)
Trends Mol. Med.
, vol.20
, pp. 306-314
-
-
Torres, A.G.1
Batlle, E.2
Ribas De Pouplana, L.3
-
27
-
-
80755169463
-
Human mitochondrial tRNAs: Biogenesis, function, structural aspects, and diseases
-
Suzuki, T., Nagao, A., & Suzuki, T. Human mitochondrial tRNAs: biogenesis, function, structural aspects, and diseases. Annu. Rev. Genet. 45, 299-329 (2011).
-
(2011)
Annu. Rev. Genet.
, vol.45
, pp. 299-329
-
-
Suzuki, T.1
Nagao, A.2
Suzuki, T.3
-
28
-
-
77952734936
-
High-Throughput DNA sequencing-Concepts and limitations
-
Kircher, M., & Kelso, J. High-Throughput DNA sequencing-concepts and limitations. Bioessays 32, 524-536 (2010).
-
(2010)
Bioessays
, vol.32
, pp. 524-536
-
-
Kircher, M.1
Kelso, J.2
-
29
-
-
84888791449
-
Characterizing 5 methylcytosine in the mammalian epitranscriptome
-
Hussain, S., Aleksic, J., Blanco, S., Dietmann, S., & Frye, M. Characterizing 5 methylcytosine in the mammalian epitranscriptome. Genome Biol. 14, 215 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. 215
-
-
Hussain, S.1
Aleksic, J.2
Blanco, S.3
Dietmann, S.4
Frye, M.5
-
30
-
-
84951734126
-
The reverse transcription signature of N-1 methyladenosine in RNA-Seq is sequence dependent
-
Hauenschild, R., et al. The reverse transcription signature of N-1 methyladenosine in RNA-Seq is sequence dependent. Nucleic Acids Res. 43, 9950-9964 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 9950-9964
-
-
Hauenschild, R.1
-
31
-
-
84877350071
-
Identification of direct targets and modified bases of RNA cytosine methyltransferases
-
Khoddami, V., & Cairns, B. R. Identification of direct targets and modified bases of RNA cytosine methyltransferases. Nat. Biotechnol. 31, 458-464 (2013).
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 458-464
-
-
Khoddami, V.1
Cairns, B.R.2
-
32
-
-
84937002114
-
RNA N6 methyladenosine methylation in post-Transcriptional gene expression regulation
-
Yue, Y., Liu, J., & He, C. RNA N6 methyladenosine methylation in post-Transcriptional gene expression regulation. Genes Dev. 29, 1343-1355 (2015).
-
(2015)
Genes Dev.
, vol.29
, pp. 1343-1355
-
-
Yue, Y.1
Liu, J.2
He, C.3
-
33
-
-
84936744064
-
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
-
Sugimoto, Y., et al. Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions. Genome Biol. 13, R67 (2012).
-
(2012)
Genome Biol.
, vol.13
, pp. R67
-
-
Sugimoto, Y.1
-
34
-
-
84880791572
-
NSun2 mediated cytosine 5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs
-
Hussain, S., et al. NSun2 mediated cytosine 5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs. Cell Rep. 4, 255-261 (2013).
-
(2013)
Cell Rep.
, vol.4
, pp. 255-261
-
-
Hussain, S.1
-
35
-
-
84863821425
-
Use of specific chemical reagents for detection of modified nucleotides in RNA
-
Behm-Ansmant, I., Helm, M., & Motorin, Y. Use of specific chemical reagents for detection of modified nucleotides in RNA. J. Nucleic Acids 2011, 408053 (2011).
-
(2011)
J. Nucleic Acids
, vol.2011
, pp. 408053
-
-
Behm-Ansmant, I.1
Helm, M.2
Motorin, Y.3
-
36
-
-
84890107723
-
High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis
-
Schwartz, S., et al. High-resolution mapping reveals a conserved, widespread, dynamic mRNA methylation program in yeast meiosis. Cell 155, 1409-1421 (2013).
-
(2013)
Cell
, vol.155
, pp. 1409-1421
-
-
Schwartz, S.1
-
37
-
-
84943570207
-
A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation
-
Ke, S., et al. A majority of m6A residues are in the last exons, allowing the potential for 3' UTR regulation. Genes Dev. 29, 2037-2053 (2015).
-
(2015)
Genes Dev.
, vol.29
, pp. 2037-2053
-
-
Ke, S.1
-
38
-
-
84858328300
-
Comment on Widespread RNA & DNA sequence differences in the human transcriptome
-
Pickrell, J. K., Gilad, Y., & Pritchard, J. K. Comment on 'Widespread RNA & DNA sequence differences in the human transcriptome'. Science 335, 1302 (2012).
-
(2012)
Science
, vol.335
, pp. 1302
-
-
Pickrell, J.K.1
Gilad, Y.2
Pritchard, J.K.3
-
39
-
-
77956897387
-
Inosine cyanoethylation identifies A to i RNA editing sites in the human transcriptome
-
Sakurai, M., Yano, T., Kawabata, H., Ueda, H., & Suzuki, T. Inosine cyanoethylation identifies A to I RNA editing sites in the human transcriptome. Nat. Chem. Biol. 6, 733-740 (2010).
-
(2010)
Nat. Chem. Biol.
, vol.6
, pp. 733-740
-
-
Sakurai, M.1
Yano, T.2
Kawabata, H.3
Ueda, H.4
Suzuki, T.5
-
40
-
-
84866074106
-
RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
-
Tuorto, F., et al. RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat. Struct. Mol. Biol. 19, 900-905 (2012).
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 900-905
-
-
Tuorto, F.1
-
41
-
-
84908153517
-
Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
-
Blanco, S., et al. Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders. EMBO J. 33, 2020-2039 (2014).
-
(2014)
EMBO J.
, vol.33
, pp. 2020-2039
-
-
Blanco, S.1
-
42
-
-
77955884641
-
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
-
Schaefer, M., et al. RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev. 24, 1590-1595 (2010).
-
(2010)
Genes Dev.
, vol.24
, pp. 1590-1595
-
-
Schaefer, M.1
-
43
-
-
0016592074
-
N6 O2'-dimethyladenosine a novel methylated ribonucleoside next to the 5' terminal of animal cell and virus mRNAs
-
Wei, C., Gershowitz, A., & Moss, B. N6, O2'-dimethyladenosine a novel methylated ribonucleoside next to the 5' terminal of animal cell and virus mRNAs. Nature 257, 251-253 (1975).
-
(1975)
Nature
, vol.257
, pp. 251-253
-
-
Wei, C.1
Gershowitz, A.2
Moss, B.3
-
44
-
-
84913568580
-
Programmable RNA recognition and cleavage by CRISPR/Cas9
-
O'Connell, M. R., et al. Programmable RNA recognition and cleavage by CRISPR/Cas9. Nature 516, 263-266 (2014).
-
(2014)
Nature
, vol.516
, pp. 263-266
-
-
O'Connell, M.R.1
|