-
1
-
-
77956597651
-
High-Resolution Magic-Angle-Spinning NMR Spectroscopy for Metabolic Profiling of Intact Tissues
-
Beckonert, O.; Coen, M.; Keun, H. C.; Wang, Y.; Ebbels, T. M.; Holmes, E.; Lindon, J. C.; Nicholson, J. K. High-Resolution Magic-Angle-Spinning NMR Spectroscopy for Metabolic Profiling of Intact Tissues Nat. Protoc. 2010, 5, 1019-32 10.1038/nprot.2010.45
-
(2010)
Nat. Protoc.
, vol.5
, pp. 1019-1032
-
-
Beckonert, O.1
Coen, M.2
Keun, H.C.3
Wang, Y.4
Ebbels, T.M.5
Holmes, E.6
Lindon, J.C.7
Nicholson, J.K.8
-
2
-
-
77749302377
-
Profiling Polar and Semipolar Plant Metabolites Throughout Extraction Processes Using a Combined Solution-State and High-Resolution Magic Angle Spinning NMR Approach
-
Sekiyama, Y.; Chikayama, E.; Kikuchi, J. Profiling Polar and Semipolar Plant Metabolites Throughout Extraction Processes Using a Combined Solution-State and High-Resolution Magic Angle Spinning NMR Approach Anal. Chem. 2010, 82, 1643-52 10.1021/ac9019076
-
(2010)
Anal. Chem.
, vol.82
, pp. 1643-1652
-
-
Sekiyama, Y.1
Chikayama, E.2
Kikuchi, J.3
-
3
-
-
84935463934
-
Multidimensional High-Resolution Magic Angle Spinning and Solution-State NMR Characterization of 13C-Labeled Plant Metabolites and Lignocellulose
-
Mori, T.; Tsuboi, Y.; Ishida, N.; Nishikubo, N.; Demura, T.; Kikuchi, J. Multidimensional High-Resolution Magic Angle Spinning and Solution-State NMR Characterization of 13C-Labeled Plant Metabolites and Lignocellulose Sci. Rep. 2015, 5, 11848 10.1038/srep11848
-
(2015)
Sci. Rep.
, vol.5
, pp. 11848
-
-
Mori, T.1
Tsuboi, Y.2
Ishida, N.3
Nishikubo, N.4
Demura, T.5
Kikuchi, J.6
-
4
-
-
84930615736
-
Profiling Planktonic Biomass Using Element-Specific, Multicomponent Nuclear Magnetic Resonance Spectroscopy
-
Komatsu, T.; Kobayashi, T.; Hatanaka, M.; Kikuchi, J. Profiling Planktonic Biomass Using Element-Specific, Multicomponent Nuclear Magnetic Resonance Spectroscopy Environ. Sci. Technol. 2015, 49, 7056-62 10.1021/acs.est.5b00837
-
(2015)
Environ. Sci. Technol.
, vol.49
, pp. 7056-7062
-
-
Komatsu, T.1
Kobayashi, T.2
Hatanaka, M.3
Kikuchi, J.4
-
5
-
-
77954834827
-
Evaluation and Characterization of Bacterial Metabolic Dynamics with a Novel Profiling Technique, Real-Time Metabolotyping
-
Fukuda, S.; Nakanishi, Y.; Chikayama, E.; Ohno, H.; Hino, T.; Kikuchi, J. Evaluation and Characterization of Bacterial Metabolic Dynamics with a Novel Profiling Technique, Real-Time Metabolotyping PLoS One 2009, 4, e4893 10.1371/journal.pone.0004893
-
(2009)
PLoS One
, vol.4
-
-
Fukuda, S.1
Nakanishi, Y.2
Chikayama, E.3
Ohno, H.4
Hino, T.5
Kikuchi, J.6
-
6
-
-
79955400483
-
Dynamic Omics Approach Identifies Nutrition-Mediated Microbial Interactions
-
Nakanishi, Y.; Fukuda, S.; Chikayama, E.; Kimura, Y.; Ohno, H.; Kikuchi, J. Dynamic Omics Approach Identifies Nutrition-Mediated Microbial Interactions J. Proteome Res. 2011, 10, 824-36 10.1021/pr100989c
-
(2011)
J. Proteome Res.
, vol.10
, pp. 824-836
-
-
Nakanishi, Y.1
Fukuda, S.2
Chikayama, E.3
Kimura, Y.4
Ohno, H.5
Kikuchi, J.6
-
7
-
-
43749087841
-
Human Metabolic Phenotype Diversity and Its Association with Diet and Blood Pressure
-
Holmes, E.; Loo, R. L.; Stamler, J.; Bictash, M.; Yap, I. K.; Chan, Q.; Ebbels, T.; De Iorio, M.; Brown, I. J.; Veselkov, K. A. et al. Human Metabolic Phenotype Diversity and Its Association with Diet and Blood Pressure Nature 2008, 453, 396-400 10.1038/nature06882
-
(2008)
Nature
, vol.453
, pp. 396-400
-
-
Holmes, E.1
Loo, R.L.2
Stamler, J.3
Bictash, M.4
Yap, I.K.5
Chan, Q.6
Ebbels, T.7
De Iorio, M.8
Brown, I.J.9
Veselkov, K.A.10
-
8
-
-
84946594570
-
Identification of Reliable Components in Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS): A Data-Driven Approach across Metabolic Processes
-
Motegi, H.; Tsuboi, Y.; Saga, A.; Kagami, T.; Inoue, M.; Toki, H.; Minowa, O.; Noda, T.; Kikuchi, J. Identification of Reliable Components in Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS): A Data-Driven Approach across Metabolic Processes Sci. Rep. 2015, 5, 15710 10.1038/srep15710
-
(2015)
Sci. Rep.
, vol.5
, pp. 15710
-
-
Motegi, H.1
Tsuboi, Y.2
Saga, A.3
Kagami, T.4
Inoue, M.5
Toki, H.6
Minowa, O.7
Noda, T.8
Kikuchi, J.9
-
9
-
-
33846088138
-
Hmdb: The Human Metabolome Database
-
Wishart, D. S.; Tzur, D.; Knox, C.; Eisner, R.; Guo, A. C.; Young, N.; Cheng, D.; Jewell, K.; Arndt, D.; Sawhney, S. et al. Hmdb: The Human Metabolome Database Nucleic Acids Res. 2007, 35, D521-6 10.1093/nar/gkl923
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D521-D526
-
-
Wishart, D.S.1
Tzur, D.2
Knox, C.3
Eisner, R.4
Guo, A.C.5
Young, N.6
Cheng, D.7
Jewell, K.8
Arndt, D.9
Sawhney, S.10
-
10
-
-
38949178155
-
Metabolite Identification Via the Madison Metabolomics Consortium Database
-
Cui, Q.; Lewis, I. A.; Hegeman, A. D.; Anderson, M. E.; Li, J.; Schulte, C. F.; Westler, W. M.; Eghbalnia, H. R.; Sussman, M. R.; Markley, J. L. Metabolite Identification Via the Madison Metabolomics Consortium Database Nat. Biotechnol. 2008, 26, 162-4 10.1038/nbt0208-162
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 162-164
-
-
Cui, Q.1
Lewis, I.A.2
Hegeman, A.D.3
Anderson, M.E.4
Li, J.5
Schulte, C.F.6
Westler, W.M.7
Eghbalnia, H.R.8
Sussman, M.R.9
Markley, J.L.10
-
11
-
-
84901758933
-
Customized Metabolomics Database for the Analysis of NMR 1H-1H Tocsy and 13C-1H HSQC-TOCSY Spectra of Complex Mixtures
-
Bingol, K.; Bruschweiler-Li, L.; Li, D. W.; Bruschweiler, R. Customized Metabolomics Database for the Analysis of NMR 1H-1H Tocsy and 13C-1H HSQC-TOCSY Spectra of Complex Mixtures Anal. Chem. 2014, 86, 5494-501 10.1021/ac500979g
-
(2014)
Anal. Chem.
, vol.86
, pp. 5494-5501
-
-
Bingol, K.1
Bruschweiler-Li, L.2
Li, D.W.3
Bruschweiler, R.4
-
12
-
-
77749330381
-
Statistical Indices for Simultaneous Large-Scale Metabolite Detections for a Single NMR Spectrum
-
Chikayama, E.; Sekiyama, Y.; Okamoto, M.; Nakanishi, Y.; Tsuboi, Y.; Akiyama, K.; Saito, K.; Shinozaki, K.; Kikuchi, J. Statistical Indices for Simultaneous Large-Scale Metabolite Detections for a Single NMR Spectrum Anal. Chem. 2010, 82, 1653-8 10.1021/ac9022023
-
(2010)
Anal. Chem.
, vol.82
, pp. 1653-1658
-
-
Chikayama, E.1
Sekiyama, Y.2
Okamoto, M.3
Nakanishi, Y.4
Tsuboi, Y.5
Akiyama, K.6
Saito, K.7
Shinozaki, K.8
Kikuchi, J.9
-
13
-
-
84953410923
-
Spincouple: Development of a Web Tool for Analyzing Metabolite Mixtures Via Two-Dimensional J-Resolved NMR Database
-
Kikuchi, J.; Tsuboi, Y.; Komatsu, K.; Gomi, M.; Chikayama, E.; Date, Y. Spincouple: Development of a Web Tool for Analyzing Metabolite Mixtures Via Two-Dimensional J-Resolved NMR Database Anal. Chem. 2016, 88, 659-65 10.1021/acs.analchem.5b02311
-
(2016)
Anal. Chem.
, vol.88
, pp. 659-665
-
-
Kikuchi, J.1
Tsuboi, Y.2
Komatsu, K.3
Gomi, M.4
Chikayama, E.5
Date, Y.6
-
14
-
-
84966283638
-
Fragment Assembly Approach Based on Graph/Network Theory with Quantum Chemistry Verifications for Assigning Multidimensional NMR Signals in Metabolite Mixtures
-
Ito, K.; Tsutsumi, Y.; Date, Y.; Kikuchi, J. Fragment Assembly Approach Based on Graph/Network Theory with Quantum Chemistry Verifications for Assigning Multidimensional NMR Signals in Metabolite Mixtures ACS Chem. Biol. 2016, 10.1021/acschembio.5b00894
-
(2016)
ACS Chem. Biol.
-
-
Ito, K.1
Tsutsumi, Y.2
Date, Y.3
Kikuchi, J.4
-
15
-
-
84958019762
-
Sensi: Signal Enhancement by Spectral Integration for the Analysis of Metabolic Mixtures
-
Misawa, T.; Komatsu, T.; Date, Y.; Kikuchi, J. Sensi: Signal Enhancement by Spectral Integration for the Analysis of Metabolic Mixtures Chem. Commun. (Cambridge, U. K.) 2016, 52, 2964-7 10.1039/C5CC09442A
-
(2016)
Chem. Commun. (Cambridge, U. K.)
, vol.52
, pp. 2964-2967
-
-
Misawa, T.1
Komatsu, T.2
Date, Y.3
Kikuchi, J.4
-
16
-
-
84979724285
-
Structure and Metabolic Flow Analysis of Molecular Complexity in 13C-Labeled Tree by 2d and 3d NMR
-
Komatsu, T.; Ohishi, R.; Shino, A.; Kikuchi, J. Structure and Metabolic Flow Analysis of Molecular Complexity in 13C-Labeled Tree by 2d and 3d NMR Angew. Chem. Int. Ed 2016, 10.1002/anie.201600334
-
(2016)
Angew. Chem. Int. Ed
-
-
Komatsu, T.1
Ohishi, R.2
Shino, A.3
Kikuchi, J.4
-
17
-
-
57949094277
-
Building Blocks for Automated Elucidation of Metabolites: Machine Learning Methods for NMR Prediction
-
Kuhn, S.; Egert, B.; Neumann, S.; Steinbeck, C. Building Blocks for Automated Elucidation of Metabolites: Machine Learning Methods for NMR Prediction BMC Bioinf. 2008, 9, 400 10.1186/1471-2105-9-400
-
(2008)
BMC Bioinf.
, vol.9
, pp. 400
-
-
Kuhn, S.1
Egert, B.2
Neumann, S.3
Steinbeck, C.4
-
18
-
-
84865635059
-
Exploring the Conformational Space of Amorphous Cellulose Using NMR Chemical Shifts
-
Mori, T.; Chikayama, E.; Tsuboi, Y.; Ishida, N.; Shisa, N.; Noritake, Y.; Moriya, S.; Kikuchi, J. Exploring the Conformational Space of Amorphous Cellulose Using NMR Chemical Shifts Carbohydr. Polym. 2012, 90, 1197-203 10.1016/j.carbpol.2012.06.027
-
(2012)
Carbohydr. Polym.
, vol.90
, pp. 1197-1203
-
-
Mori, T.1
Chikayama, E.2
Tsuboi, Y.3
Ishida, N.4
Shisa, N.5
Noritake, Y.6
Moriya, S.7
Kikuchi, J.8
-
19
-
-
70350026328
-
Structure Determination of Slowly Exchanging Conformers in Solution Using High-Resolution NMR, Computational Modeling and DFT-GIAO Chemical Shielding: Application to an Erythronolide a Derivative
-
Muri, D.; Corminboeuf, C.; Carreira, E. M.; Jeannerat, D. Structure Determination of Slowly Exchanging Conformers in Solution Using High-Resolution NMR, Computational Modeling and DFT-GIAO Chemical Shielding: Application to an Erythronolide a Derivative Magn. Reson. Chem. 2009, 47, 909-16 10.1002/mrc.2476
-
(2009)
Magn. Reson. Chem.
, vol.47
, pp. 909-916
-
-
Muri, D.1
Corminboeuf, C.2
Carreira, E.M.3
Jeannerat, D.4
-
20
-
-
84880553589
-
Selective Signal Detection in Solid-State NMR Using Rotor-Synchronized Dipolar Dephasing for the Analysis of Hemicellulose in Lignocellulosic Biomass
-
Komatsu, T.; Kikuchi, J. Selective Signal Detection in Solid-State NMR Using Rotor-Synchronized Dipolar Dephasing for the Analysis of Hemicellulose in Lignocellulosic Biomass J. Phys. Chem. Lett. 2013, 4, 2279-2283 10.1021/jz400978g
-
(2013)
J. Phys. Chem. Lett.
, vol.4
, pp. 2279-2283
-
-
Komatsu, T.1
Kikuchi, J.2
-
21
-
-
0028988451
-
Application of 1H NMR Chemical Shifts to Measure the Quality of Protein Structures
-
Williamson, M. P.; Kikuchi, J.; Asakura, T. Application of 1H NMR Chemical Shifts to Measure the Quality of Protein Structures J. Mol. Biol. 1995, 247, 541-6 10.1016/S0022-2836(05)80135-4
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 541-546
-
-
Williamson, M.P.1
Kikuchi, J.2
Asakura, T.3
-
22
-
-
0032587140
-
Use of 13C Conformation-Dependent Chemical Shifts to Elucidate the Local Structure of a Large Protein with Homologous Domains in Solution and Solid State
-
Kikuchi, J.; Asakura, T. Use of 13C Conformation-Dependent Chemical Shifts to Elucidate the Local Structure of a Large Protein with Homologous Domains in Solution and Solid State J. Biochem. Biophys. Methods 1999, 38, 203-8 10.1016/S0165-022X(98)00043-8
-
(1999)
J. Biochem. Biophys. Methods
, vol.38
, pp. 203-208
-
-
Kikuchi, J.1
Asakura, T.2
-
23
-
-
84896305476
-
Nuclear Magnetic Shielding Constants from Quantum Mechanical/Molecular Mechanical Calculations Using Polarizable Embedding: Role of the Embedding Potential
-
Steinmann, C.; Olsen, J. M.; Kongsted, J. Nuclear Magnetic Shielding Constants from Quantum Mechanical/Molecular Mechanical Calculations Using Polarizable Embedding: Role of the Embedding Potential J. Chem. Theory Comput. 2014, 10, 981-8 10.1021/ct400880n
-
(2014)
J. Chem. Theory Comput.
, vol.10
, pp. 981-988
-
-
Steinmann, C.1
Olsen, J.M.2
Kongsted, J.3
-
24
-
-
84866403606
-
Electronic Properties of Water in Liquid Environment. A Sequential QM/MM Study Using the Free Energy Gradient Method
-
Georg, H. C.; Canuto, S. Electronic Properties of Water in Liquid Environment. A Sequential QM/MM Study Using the Free Energy Gradient Method J. Phys. Chem. B 2012, 116, 11247-54 10.1021/jp304201b
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 11247-11254
-
-
Georg, H.C.1
Canuto, S.2
-
25
-
-
79960619447
-
Computational Protocols for Prediction of Solute NMR Relative Chemical Shifts. A Case Study of L-Tryptophan in Aqueous Solution
-
Eriksen, J. J.; Olsen, J. M.; Aidas, K.; Agren, H.; Mikkelsen, K. V.; Kongsted, J. Computational Protocols for Prediction of Solute NMR Relative Chemical Shifts. A Case Study of L-Tryptophan in Aqueous Solution J. Comput. Chem. 2011, 32, 2853-64 10.1002/jcc.21867
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 2853-2864
-
-
Eriksen, J.J.1
Olsen, J.M.2
Aidas, K.3
Agren, H.4
Mikkelsen, K.V.5
Kongsted, J.6
-
26
-
-
33846409804
-
Nuclear Magnetic Shielding Constants of Liquid Water: Insights from Hybrid Quantum Mechanics/Molecular Mechanics Models
-
Kongsted, J.; Nielsen, C. B.; Mikkelsen, K. V.; Christiansen, O.; Ruud, K. Nuclear Magnetic Shielding Constants of Liquid Water: Insights from Hybrid Quantum Mechanics/Molecular Mechanics Models J. Chem. Phys. 2007, 126, 034510 10.1063/1.2424713
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 034510
-
-
Kongsted, J.1
Nielsen, C.B.2
Mikkelsen, K.V.3
Christiansen, O.4
Ruud, K.5
-
27
-
-
84962428776
-
A Quantum Mechanical/Molecular Dynamics/Mean Field Study of Acrolein in Aqueous Solution: Analysis of H Bonding and Bulk Effects on Spectroscopic Properties
-
Brancato, G.; Rega, N.; Barone, V. A Quantum Mechanical/Molecular Dynamics/Mean Field Study of Acrolein in Aqueous Solution: Analysis of H Bonding and Bulk Effects on Spectroscopic Properties J. Chem. Phys. 2006, 125, 164515 10.1063/1.2359723
-
(2006)
J. Chem. Phys.
, vol.125
, pp. 164515
-
-
Brancato, G.1
Rega, N.2
Barone, V.3
-
28
-
-
34548727938
-
Prediction of the 1H and 13C NMR Spectra of Alpha-D-Glucose in Water by DFT Methods and MD Simulations
-
Bagno, A.; Rastrelli, F.; Saielli, G. Prediction of the 1H and 13C NMR Spectra of Alpha-D-Glucose in Water by DFT Methods and MD Simulations J. Org. Chem. 2007, 72, 7373-81 10.1021/jo071129v
-
(2007)
J. Org. Chem.
, vol.72
, pp. 7373-7381
-
-
Bagno, A.1
Rastrelli, F.2
Saielli, G.3
-
29
-
-
84878034605
-
Fullerene C70 Characterization by 13C NMR and the Importance of the Solvent and Dynamics in Spectral Simulations
-
Kaminsky, J.; Budesinsky, M.; Taubert, S.; Bour, P.; Straka, M. Fullerene C70 Characterization by 13C NMR and the Importance of the Solvent and Dynamics in Spectral Simulations Phys. Chem. Chem. Phys. 2013, 15, 9223-30 10.1039/c3cp50657f
-
(2013)
Phys. Chem. Chem. Phys.
, vol.15
, pp. 9223-9230
-
-
Kaminsky, J.1
Budesinsky, M.2
Taubert, S.3
Bour, P.4
Straka, M.5
-
30
-
-
10644250257
-
Inhomogeneous Electron Gas
-
Hohenberg, P.; Kohn, W. Inhomogeneous Electron Gas Phys. Rev. 1964, 136, B864-B871 10.1103/PhysRev.136.B864
-
(1964)
Phys. Rev.
, vol.136
, pp. B864-B871
-
-
Hohenberg, P.1
Kohn, W.2
-
31
-
-
25044455217
-
Mp2 Energy Evaluation by Direct Methods
-
Head-Gordon, M.; Pople, J. A.; Frisch, M. J. Mp2 Energy Evaluation by Direct Methods Chem. Phys. Lett. 1988, 153, 503-506 10.1016/0009-2614(88)85250-3
-
(1988)
Chem. Phys. Lett.
, vol.153
, pp. 503-506
-
-
Head-Gordon, M.1
Pople, J.A.2
Frisch, M.J.3
-
32
-
-
36849115659
-
Self-Consistent Molecular Orbital Methods. 9. Extended Gaussian-Type Basis for Molecular-Orbital Studies of Organic Molecules
-
Ditchfield, R.; Hehre, W. J.; Pople, J. A. Self-Consistent Molecular Orbital Methods. 9. Extended Gaussian-Type Basis for Molecular-Orbital Studies of Organic Molecules J. Chem. Phys. 1971, 54, 724 10.1063/1.1674902
-
(1971)
J. Chem. Phys.
, vol.54
, pp. 724
-
-
Ditchfield, R.1
Hehre, W.J.2
Pople, J.A.3
-
33
-
-
33746614482
-
Gaussian Basis Sets for Use in Correlated Molecular Calculations. I. The Atoms Boron through Neon and Hydrogen
-
Dunning, T. H. Gaussian Basis Sets for Use in Correlated Molecular Calculations. I. The Atoms Boron through Neon and Hydrogen J. Chem. Phys. 1989, 90, 1007-1023 10.1063/1.456153
-
(1989)
J. Chem. Phys.
, vol.90
, pp. 1007-1023
-
-
Dunning, T.H.1
-
34
-
-
84856301655
-
Computational Prediction of 1H and 13C Chemical Shifts: A Useful Tool for Natural Product, Mechanistic, and Synthetic Organic Chemistry
-
Lodewyk, M. W.; Siebert, M. R.; Tantillo, D. J. Computational Prediction of 1H and 13C Chemical Shifts: A Useful Tool for Natural Product, Mechanistic, and Synthetic Organic Chemistry Chem. Rev. 2012, 112, 1839-62 10.1021/cr200106v
-
(2012)
Chem. Rev.
, vol.112
, pp. 1839-1862
-
-
Lodewyk, M.W.1
Siebert, M.R.2
Tantillo, D.J.3
-
35
-
-
84876148784
-
HMDB 3.0 - The Human Metabolome Database in 2013
-
Wishart, D. S.; Jewison, T.; Guo, A. C.; Wilson, M.; Knox, C.; Liu, Y.; Djoumbou, Y.; Mandal, R.; Aziat, F.; Dong, E. et al. HMDB 3.0 - the Human Metabolome Database in 2013 Nucleic Acids Res. 2013, 41, D801-7 10.1093/nar/gks1065
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D801-D807
-
-
Wishart, D.S.1
Jewison, T.2
Guo, A.C.3
Wilson, M.4
Knox, C.5
Liu, Y.6
Djoumbou, Y.7
Mandal, R.8
Aziat, F.9
Dong, E.10
-
36
-
-
84979586933
-
Pubchem Substance and Compound Databases
-
Kim, S.; Thiessen, P. A.; Bolton, E. E.; Chen, J.; Fu, G.; Gindulyte, A.; Han, L.; He, J.; He, S.; Shoemaker, B. A. Pubchem Substance and Compound Databases Nucleic Acids Res. 2016, 44, D1202-D1213 10.1093/nar/gkv951
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. D1202-D1213
-
-
Kim, S.1
Thiessen, P.A.2
Bolton, E.E.3
Chen, J.4
Fu, G.5
Gindulyte, A.6
Han, L.7
He, J.8
He, S.9
Shoemaker, B.A.10
-
37
-
-
80053512597
-
Open Babel: An Open Chemical Toolbox
-
O'Boyle, N. M.; Banck, M.; James, C. A.; Morley, C.; Vandermeersch, T.; Hutchison, G. R. Open Babel: An Open Chemical Toolbox J. Cheminf. 2011, 3, 33 10.1186/1758-2946-3-33
-
(2011)
J. Cheminf.
, vol.3
, pp. 33
-
-
O'Boyle, N.M.1
Banck, M.2
James, C.A.3
Morley, C.4
Vandermeersch, T.5
Hutchison, G.R.6
-
38
-
-
84865228751
-
ACPYPE - AnteChamber PYthon Parser InterfacE
-
Sousa da Silva, A. W.; Vranken, W. F. ACPYPE-AnteChamber PYthon Parser InterfacE BMC Res. Notes 2012, 5, 367 10.1186/1756-0500-5-367
-
(2012)
BMC Res. Notes
, vol.5
, pp. 367
-
-
Sousa Da Silva, A.W.1
Vranken, W.F.2
-
39
-
-
27344454932
-
GROMACS: Fast, Flexible, and Free
-
Van Der Spoel, D.; Lindahl, E.; Hess, B.; Groenhof, G.; Mark, A. E.; Berendsen, H. J. GROMACS: Fast, Flexible, and Free J. Comput. Chem. 2005, 26, 1701-18 10.1002/jcc.20291
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.6
-
40
-
-
2942532422
-
Development and Testing of a General Amber Force Field
-
Wang, J.; Wolf, R. M.; Caldwell, J. W.; Kollman, P. A.; Case, D. A. Development and Testing of a General Amber Force Field J. Comput. Chem. 2004, 25, 1157-74 10.1002/jcc.20035
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
41
-
-
34547809547
-
A Unified Formulation of the Constant Temperature Molecular Dynamics
-
Nose, S. A Unified Formulation of the Constant Temperature Molecular Dynamics J. Chem. Phys. 1984, 81, 511 10.1063/1.447334
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 511
-
-
Nose, S.1
-
42
-
-
0001538909
-
Canonical Dynamics: Equilibrium Phase-Space Distributions
-
Hoover, W. G. Canonical Dynamics: Equilibrium Phase-Space Distributions Phys. Rev. A: At., Mol., Opt. Phys. 1985, 31, 1695-1697 10.1103/PhysRevA.31.1695
-
(1985)
Phys. Rev. A: At., Mol., Opt. Phys.
, vol.31
, pp. 1695-1697
-
-
Hoover, W.G.1
-
43
-
-
0037126423
-
Enhancement of the Wolf Damped Coulomb Potential: Static, Dynamic, and Dielectric Properties of Liquid Water from Molecular Simulation
-
Zahn, D.; Schilling, B.; Kast, S. M. Enhancement of the Wolf Damped Coulomb Potential: Static, Dynamic, and Dielectric Properties of Liquid Water from Molecular Simulation J. Phys. Chem. B 2002, 106, 10725-10732 10.1021/jp025949h
-
(2002)
J. Phys. Chem. B
, vol.106
, pp. 10725-10732
-
-
Zahn, D.1
Schilling, B.2
Kast, S.M.3
-
44
-
-
34547297406
-
Dihedral Angle Principal Component Analysis of Molecular Dynamics Simulations
-
Altis, A.; Nguyen, P. H.; Hegger, R.; Stock, G. Dihedral Angle Principal Component Analysis of Molecular Dynamics Simulations J. Chem. Phys. 2007, 126, 244111 10.1063/1.2746330
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 244111
-
-
Altis, A.1
Nguyen, P.H.2
Hegger, R.3
Stock, G.4
-
45
-
-
84961981184
-
Study of the Optical and Magnetic Properties of Pyrimidine in Water Combining PCM and QM/MM Methodologies
-
Manzoni, V.; Lyra, M. L.; Gester, R. M.; Coutinho, K.; Canuto, S. Study of the Optical and Magnetic Properties of Pyrimidine in Water Combining PCM and QM/MM Methodologies Phys. Chem. Chem. Phys. 2010, 12, 14023-33 10.1039/c0cp00122h
-
(2010)
Phys. Chem. Chem. Phys.
, vol.12
, pp. 14023-14033
-
-
Manzoni, V.1
Lyra, M.L.2
Gester, R.M.3
Coutinho, K.4
Canuto, S.5
-
46
-
-
33846287932
-
Effects of Zero-Point and Thermal Vibrational Averaging on Computed NMR Properties of a Model Compound for Purine Nucleosides
-
Woodford, J. N.; Harbison, G. S. Effects of Zero-Point and Thermal Vibrational Averaging on Computed NMR Properties of a Model Compound for Purine Nucleosides J. Chem. Theory Comput. 2006, 2, 1464-75 10.1021/ct6000736
-
(2006)
J. Chem. Theory Comput.
, vol.2
, pp. 1464-1475
-
-
Woodford, J.N.1
Harbison, G.S.2
-
47
-
-
62249223602
-
Relative Importance of First and Second Derivatives of Nuclear Magnetic Resonance Chemical Shifts and Spin-Spin Coupling Constants for Vibrational Averaging
-
Dracinsky, M.; Kaminsky, J.; Bour, P. Relative Importance of First and Second Derivatives of Nuclear Magnetic Resonance Chemical Shifts and Spin-Spin Coupling Constants for Vibrational Averaging J. Chem. Phys. 2009, 130, 094106 10.1063/1.3081317
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 094106
-
-
Dracinsky, M.1
Kaminsky, J.2
Bour, P.3
-
48
-
-
34748866639
-
Vibrational Averaging of Chemical Shift Anisotropies in Model Peptides
-
Tang, S.; Case, D. A. Vibrational Averaging of Chemical Shift Anisotropies in Model Peptides J. Biomol. NMR 2007, 38, 255-66 10.1007/s10858-007-9164-8
-
(2007)
J. Biomol. NMR
, vol.38
, pp. 255-266
-
-
Tang, S.1
Case, D.A.2
|