메뉴 건너뛰기




Volumn 6, Issue , 2016, Pages

Thioflavin T as an efficient fluorescence sensor for selective recognition of RNA G-quadruplexes

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENT DYE; GUANINE QUADRUPLEX; RNA; THIAZOLE DERIVATIVE; THIOFLAVINE;

EID: 84964644976     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep24793     Document Type: Article
Times cited : (137)

References (40)
  • 1
    • 0037142071 scopus 로고    scopus 로고
    • Crystal structure of parallel quadruplexes from human telomeric DNA
    • Parkinson, G. N., Lee, M. P. & Neidle, S. Crystal structure of parallel quadruplexes from human telomeric DNA. Nature 417, 876-880 (2002).
    • (2002) Nature , vol.417 , pp. 876-880
    • Parkinson, G.N.1    Lee, M.P.2    Neidle, S.3
  • 2
    • 20144364292 scopus 로고    scopus 로고
    • Prevalence of quadruplexes in the human genome
    • Huppert, J. L. & Balasubramanian, S. Prevalence of quadruplexes in the human genome. Nucleic Acids Res. 33, 2908-2916 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2908-2916
    • Huppert, J.L.1    Balasubramanian, S.2
  • 3
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • Todd, A. K., Johnston, M. & Neidle, S. Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res. 33, 2901-2907 (2005).
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 4
    • 84890958553 scopus 로고    scopus 로고
    • Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells
    • Biffi, G., Di Antonio, M., Tannahill, D. & Balasubramanian, S. Visualization and selective chemical targeting of RNA G-quadruplex structures in the cytoplasm of human cells. Nat. Chem. 6, 75-80 (2014).
    • (2014) Nat. Chem. , vol.6 , pp. 75-80
    • Biffi, G.1    Di Antonio, M.2    Tannahill, D.3    Balasubramanian, S.4
  • 5
    • 84875464903 scopus 로고    scopus 로고
    • Quantitative visualization of DNA G-quadruplex structures in human cells
    • Biffi, G., Tannahill, D., McCafferty, J. & Balasubramanian, S. Quantitative visualization of DNA G-quadruplex structures in human cells. Nat. Chem. 5, 182-186 (2013).
    • (2013) Nat. Chem. , vol.5 , pp. 182-186
    • Biffi, G.1    Tannahill, D.2    McCafferty, J.3    Balasubramanian, S.4
  • 6
    • 84877768759 scopus 로고    scopus 로고
    • G-quadruplex structures are stable and detectable in human genomic DNA
    • Lam, E. Y., Beraldi, D., Tannahill, D. & Balasubramanian, S. G-quadruplex structures are stable and detectable in human genomic DNA. Nat. Commun. 4, 1796 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 1796
    • Lam, E.Y.1    Beraldi, D.2    Tannahill, D.3    Balasubramanian, S.4
  • 7
    • 84857163904 scopus 로고    scopus 로고
    • Small-molecule-induced DNA damage identifies alternative DNA structures in human genes
    • Rodriguez, R. et al. Small-molecule-induced DNA damage identifies alternative DNA structures in human genes. Nat. Chem. Biol. 8, 301-310 (2012).
    • (2012) Nat. Chem. Biol. , vol.8 , pp. 301-310
    • Rodriguez, R.1
  • 8
    • 79953313413 scopus 로고    scopus 로고
    • Targeting G-quadruplexes in gene promoters: A novel anticancer strategy?
    • Balasubramanian, S., Hurley, L. H. & Neidle, S. Targeting G-quadruplexes in gene promoters: a novel anticancer strategy? Nat. Rev. Drug Discov. 10, 261-275 (2011).
    • (2011) Nat. Rev. Drug Discov. , vol.10 , pp. 261-275
    • Balasubramanian, S.1    Hurley, L.H.2    Neidle, S.3
  • 9
    • 81455140677 scopus 로고    scopus 로고
    • The application of DNA and RNA G-quadruplexes to therapeutic medicines
    • Collie, G. W. & Parkinson, G. N. The application of DNA and RNA G-quadruplexes to therapeutic medicines. Chem. Soc. Rev. 40, 5867-5892 (2011).
    • (2011) Chem. Soc. Rev. , vol.40 , pp. 5867-5892
    • Collie, G.W.1    Parkinson, G.N.2
  • 10
    • 84890516811 scopus 로고    scopus 로고
    • Exploring the chemical space of G-quadruplex binders: Discovery of a novel chemotype targeting the human telomeric sequence
    • Di Leva, F. S. et al. Exploring the chemical space of G-quadruplex binders: discovery of a novel chemotype targeting the human telomeric sequence. J. Med. Chem. 56, 9646-9654 (2013).
    • (2013) J. Med. Chem. , vol.56 , pp. 9646-9654
    • Di Leva, F.S.1
  • 11
    • 84869996732 scopus 로고    scopus 로고
    • Shooting for selective druglike G-quadruplex binders: Evidence for telomeric DNA damage and tumor cell death
    • Cosconati, S. et al. Shooting for selective druglike G-quadruplex binders: evidence for telomeric DNA damage and tumor cell death. J. Med. Chem. 55, 9785-9792 (2012).
    • (2012) J. Med. Chem. , vol.55 , pp. 9785-9792
    • Cosconati, S.1
  • 12
    • 84872204067 scopus 로고    scopus 로고
    • Sequence, stability, and structure of G-quadruplexes and their interactions with drugs
    • Chen, Y. & Yang, D. Sequence, stability, and structure of G-quadruplexes and their interactions with drugs. Curr. Protoc. Nucleic Acid Chem. 50, 17.5.1-17.5.17 (2012).
    • (2012) Curr. Protoc. Nucleic Acid Chem. , vol.50 , pp. 1-17
    • Chen, Y.1    Yang, D.2
  • 14
    • 77956539976 scopus 로고    scopus 로고
    • A crystallographic and modelling study of a human telomeric RNA (TERRA) quadruplex
    • Collie, G. W., Haider, S. M., Neidle, S. & Parkinson, G. N. A crystallographic and modelling study of a human telomeric RNA (TERRA) quadruplex. Nucleic Acids Res. 38, 5569-5580 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 5569-5580
    • Collie, G.W.1    Haider, S.M.2    Neidle, S.3    Parkinson, G.N.4
  • 15
    • 79952269800 scopus 로고    scopus 로고
    • Structural basis of telomeric RNA quadruplex-acridine ligand recognition
    • Collie, G. W., Sparapani, S., Parkinson, G. N. & Neidle, S. Structural basis of telomeric RNA quadruplex-acridine ligand recognition. J. Am. Chem. Soc. 133, 2721-2728 (2011).
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 2721-2728
    • Collie, G.W.1    Sparapani, S.2    Parkinson, G.N.3    Neidle, S.4
  • 16
  • 17
    • 84949957913 scopus 로고    scopus 로고
    • Directly lighting up RNA G-quadruplexes from test tubes to living human cells
    • Xu, S. et al. Directly lighting up RNA G-quadruplexes from test tubes to living human cells. Nucleic Acids Res. 43, 9575-9586 (2015).
    • (2015) Nucleic Acids Res. , vol.43 , pp. 9575-9586
    • Xu, S.1
  • 18
    • 78049308448 scopus 로고    scopus 로고
    • Protein-induced photophysical changes to the amyloid indicator dye thioflavin T
    • Wolfe, L. S. et al. Protein-induced photophysical changes to the amyloid indicator dye thioflavin T. Proc. Natl. Acad. Sci. USA 107, 16863-16868 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 16863-16868
    • Wolfe, L.S.1
  • 19
    • 84866388266 scopus 로고    scopus 로고
    • Molecular rotors: What lies behind the high sensitivity of the Thioflavin-T fluorescent marker
    • Amdursky, N., Erez, Y. & Huppert, D. Molecular Rotors: What Lies Behind the High Sensitivity of the Thioflavin-T Fluorescent Marker. Acc. Chem. Res. 45, 1548-1557 (2012).
    • (2012) Acc. Chem. Res. , vol.45 , pp. 1548-1557
    • Amdursky, N.1    Erez, Y.2    Huppert, D.3
  • 20
    • 84893610214 scopus 로고    scopus 로고
    • + sensor
    • + sensor. Anal. Chem. 86, 1622-1631 (2014).
    • (2014) Anal. Chem. , vol.86 , pp. 1622-1631
    • Liu, L.1
  • 21
    • 84872100978 scopus 로고    scopus 로고
    • Thioflavin T as an efficient inducer and selective fluorescent sensor for the human telomeric G-quadruplex DNA
    • Mohanty, J. et al. Thioflavin T as an efficient inducer and selective fluorescent sensor for the human telomeric G-quadruplex DNA. J. Am. Chem. Soc. 135, 367-376 (2013).
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 367-376
    • Mohanty, J.1
  • 22
    • 58149175632 scopus 로고    scopus 로고
    • Thioflavin T as a molecular rotor: Fluorescent properties of thioflavin T in solvents with different viscosity
    • Stsiapura, V. I. et al. Thioflavin T as a molecular rotor: fluorescent properties of thioflavin T in solvents with different viscosity. J. Phys. Chem. B 112, 15893-15902 (2008).
    • (2008) J. Phys. Chem. B , vol.112 , pp. 15893-15902
    • Stsiapura, V.I.1
  • 23
    • 64849111470 scopus 로고    scopus 로고
    • Fluorescent sensor for monitoring structural changes of G-quadruplexes and detection of potassium ion
    • Kong, D. M., Ma, Y. E., Guo, J. H., Yang, W. & Shen, H. X. Fluorescent sensor for monitoring structural changes of G-quadruplexes and detection of potassium ion. Anal. Chem. 81, 2678-2684 (2009).
    • (2009) Anal. Chem. , vol.81 , pp. 2678-2684
    • Kong, D.M.1    Ma, Y.E.2    Guo, J.H.3    Yang, W.4    Shen, H.X.5
  • 24
    • 84857082456 scopus 로고    scopus 로고
    • Early detection of insulin fibrillation: A fluorescence lifetime assay to probe the pre-fibrillar regime
    • Mohanty, J., Choudhury, S. D., Pal, H. & Bhasikuttan, A. C. Early detection of insulin fibrillation: a fluorescence lifetime assay to probe the pre-fibrillar regime. Chem. Commun. 48, 2403-2405 (2012).
    • (2012) Chem. Commun. , vol.48 , pp. 2403-2405
    • Mohanty, J.1    Choudhury, S.D.2    Pal, H.3    Bhasikuttan, A.C.4
  • 25
    • 84875800206 scopus 로고    scopus 로고
    • Bulges in G-quadruplexes: Broadening the definition of G-quadruplex-forming sequences
    • Mukundan, V. T. & Phan, A. T. Bulges in G-quadruplexes: broadening the definition of G-quadruplex-forming sequences. J. Am. Chem. Soc. 135, 5017-5028 (2013).
    • (2013) J. Am. Chem. Soc. , vol.135 , pp. 5017-5028
    • Mukundan, V.T.1    Phan, A.T.2
  • 26
    • 84905639191 scopus 로고    scopus 로고
    • Structural basis for activity of highly efficient RNA mimics of green fluorescent protein
    • Warner, K. D. et al. Structural basis for activity of highly efficient RNA mimics of green fluorescent protein. Nat. Struct. Mol. Biol. 21, 658-663 (2014).
    • (2014) Nat. Struct. Mol. Biol. , vol.21 , pp. 658-663
    • Warner, K.D.1
  • 27
    • 79960959180 scopus 로고    scopus 로고
    • RNA mimics of green fluorescent protein
    • Paige, J. S., Wu, K. Y. & Jaffrey, S. R. RNA mimics of green fluorescent protein. Science 333, 642-646 (2011).
    • (2011) Science , vol.333 , pp. 642-646
    • Paige, J.S.1    Wu, K.Y.2    Jaffrey, S.R.3
  • 28
    • 84904731281 scopus 로고    scopus 로고
    • A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore
    • Huang, H. et al. A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore. Nat. Chem. Biol. 10, 686-691 (2014).
    • (2014) Nat. Chem. Biol. , vol.10 , pp. 686-691
    • Huang, H.1
  • 29
    • 84919934354 scopus 로고    scopus 로고
    • G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments
    • Ivanov, P. et al. G-quadruplex structures contribute to the neuroprotective effects of angiogenin-induced tRNA fragments. Proc. Natl. Acad. Sci. USA 111, 18201-18206 (2014).
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 18201-18206
    • Ivanov, P.1
  • 30
    • 84864600748 scopus 로고    scopus 로고
    • Development of a universal colorimetric indicator for G-Quadruplex structures by the fusion of thiazole orange and isaindigotone skeleton
    • Yan, J. W. et al. Development of a universal colorimetric indicator for G-Quadruplex structures by the fusion of thiazole orange and isaindigotone skeleton. Anal. Chem. 84, 6288-6292 (2012).
    • (2012) Anal. Chem. , vol.84 , pp. 6288-6292
    • Yan, J.W.1
  • 31
    • 77951780294 scopus 로고    scopus 로고
    • Viscosity effect on the ultrafast bond twisting dynamics in an amyloid fibril sensor: Thioflavin-T
    • Singh, P. K., Kumbhakar, M., Pal, H. & Nath, S. Viscosity effect on the ultrafast bond twisting dynamics in an amyloid fibril sensor: Thioflavin-T. J. Phys. Chem. B 114, 5920-5927 (2010).
    • (2010) J. Phys. Chem. B , vol.114 , pp. 5920-5927
    • Singh, P.K.1    Kumbhakar, M.2    Pal, H.3    Nath, S.4
  • 32
    • 84875046818 scopus 로고    scopus 로고
    • 5′ -UTR RNA G-quadruplexes: Translation regulation and targeting
    • Bugaut, A. & Balasubramanian, S. 5′ -UTR RNA G-quadruplexes: translation regulation and targeting. Nucleic Acids Res. 3, 1-15 (2012).
    • (2012) Nucleic Acids Res. , vol.3 , pp. 1-15
    • Bugaut, A.1    Balasubramanian, S.2
  • 33
    • 84455173130 scopus 로고    scopus 로고
    • Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5′ -untranslated region
    • Lammich, S. et al. Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5′ -untranslated region. J. Biol. Chem. 286, 45063-45072 (2011).
    • (2011) J. Biol. Chem. , vol.286 , pp. 45063-45072
    • Lammich, S.1
  • 34
    • 77957061503 scopus 로고    scopus 로고
    • The BCL-2 5′ untranslated region contains an RNA G-quadruplex-forming motif that modulates protein expression
    • Shahid, R., Bugaut, A. & Balasubramanian, S. The BCL-2 5′ untranslated region contains an RNA G-quadruplex-forming motif that modulates protein expression. Biochemistry. 49, 8300-8306 (2010).
    • (2010) Biochemistry , vol.49 , pp. 8300-8306
    • Shahid, R.1    Bugaut, A.2    Balasubramanian, S.3
  • 35
    • 73149103952 scopus 로고    scopus 로고
    • Repression of translation of human estrogen receptor alpha by G-quadruplex formation
    • Balkwill, G. D. et al. Repression of translation of human estrogen receptor alpha by G-quadruplex formation. Biochemistry. 48, 11487-11495 (2009).
    • (2009) Biochemistry , vol.48 , pp. 11487-11495
    • Balkwill, G.D.1
  • 36
    • 77957082956 scopus 로고    scopus 로고
    • A G-quadruplex structure within the 5′ -UTR of TRF2 mRNA represses translation in human cells
    • Gomez, D. et al. A G-quadruplex structure within the 5′ -UTR of TRF2 mRNA represses translation in human cells. Nucleic Acids Res. 38, 7187-7198 (2010).
    • (2010) Nucleic Acids Res. , vol.38 , pp. 7187-7198
    • Gomez, D.1
  • 37
    • 45749139174 scopus 로고    scopus 로고
    • Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif
    • Arora, A. et al. Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif. RNA 14, 1290-1296 (2008).
    • (2008) RNA , vol.14 , pp. 1290-1296
    • Arora, A.1
  • 38
    • 78650271083 scopus 로고    scopus 로고
    • An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES
    • Morris, M. J., Negishi, Y., Pazsint, C., Schonhoft, J. D. & Basu, S. An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES. J. Am. Chem. Soc. 132, 17831-17839 (2010).
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 17831-17839
    • Morris, M.J.1    Negishi, Y.2    Pazsint, C.3    Schonhoft, J.D.4    Basu, S.5
  • 39
    • 84896259966 scopus 로고    scopus 로고
    • C9orf72 nucleotide repeat structures initiate molecular cascades of disease
    • Haeusler, A. R. et al. C9orf72 nucleotide repeat structures initiate molecular cascades of disease. Nature 507, 195-200 (2014).
    • (2014) Nature , vol.507 , pp. 195-200
    • Haeusler, A.R.1
  • 40
    • 38549083634 scopus 로고    scopus 로고
    • RNAJunction: A database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
    • Bindewald, E., Hayes, R., Yingling, Y. G., Kasprzak, W. & Shapiro, B. A. RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. Nucleic Acids Res. 36, 392-397 (2008).
    • (2008) Nucleic Acids Res. , vol.36 , pp. 392-397
    • Bindewald, E.1    Hayes, R.2    Yingling, Y.G.3    Kasprzak, W.4    Shapiro, B.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.