-
1
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
DOI 10.1146/annurev.biochem.75.101304.123901
-
Chiti F, Dobson CM (2006) Protein misfolding, functional amyloid, and human disease. Annu Rev Biochem 75:333-366. (Pubitemid 44118036)
-
(2006)
Annual Review of Biochemistry
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
2
-
-
33750017513
-
Molecular structure of amyloid fibrils: Insights from solid-state NMR
-
DOI 10.1017/S0033583506004173, PII S0033583506004173
-
Tycko R (2006) Molecular structure of amyloid fibrils: Insights from solid-state NMR. Q Rev Biophys 39(1):1-55. (Pubitemid 44566373)
-
(2006)
Quarterly Reviews of Biophysics
, vol.39
, Issue.1
, pp. 1-55
-
-
Tycko, R.1
-
3
-
-
33646375442
-
Deposition diseases and 3D domain swapping
-
Bennett MJ, Sawaya MR, Eisenberg D (2006) Deposition diseases and 3D domain swapping. Structure 14(5):811-824.
-
(2006)
Structure
, vol.14
, Issue.5
, pp. 811-824
-
-
Bennett, M.J.1
Sawaya, M.R.2
Eisenberg, D.3
-
4
-
-
73649140576
-
The common architecture of cross-beta amyloid
-
Jahn TR, et al. (2010) The common architecture of cross-beta amyloid. J Mol Biol 395(4):717-727.
-
(2010)
J Mol Biol
, vol.395
, Issue.4
, pp. 717-727
-
-
Jahn, T.R.1
-
5
-
-
33750826280
-
General structural motifs of amyloid protofilaments
-
DOI 10.1073/pnas.0607815103
-
Ferguson N, et al. (2006) General structural motifs of amyloid protofilaments. Proc Natl Acad Sci USA 103(44):16248-16253. (Pubitemid 44715182)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.44
, pp. 16248-16253
-
-
Ferguson, N.1
Becker, J.2
Tidow, H.3
Tremmel, S.4
Sharpe, T.D.5
Krause, G.6
Flinders, J.7
Petrovich, M.8
Berriman, J.9
Oschkinat, H.10
Fersht, A.R.11
-
6
-
-
76649098825
-
Binding modeof Thioflavin T and other molecular probes in the context of amyloid fibrils-current status
-
Groenning M (2009) Binding modeof Thioflavin T and other molecular probes in the context of amyloid fibrils-current status. J Chem Biol.
-
(2009)
J Chem Biol
-
-
Groenning, M.1
-
7
-
-
58149326746
-
Molecular mechanism of thioflavin-T binding to the surface of beta-rich peptide self-assemblies
-
Biancalana M, Makabe K, Koide A, Koide S (2009) Molecular mechanism of thioflavin-T binding to the surface of beta-rich peptide self-assemblies. J Mol Biol 385(4):1052-1063.
-
(2009)
J Mol Biol
, vol.385
, Issue.4
, pp. 1052-1063
-
-
Biancalana, M.1
Makabe, K.2
Koide, A.3
Koide, S.4
-
8
-
-
0000464103
-
Fluorescent stains, with special reference to amyloid and connective tissues
-
Vassar PS, Culling CF (1959) Fluorescent stains, with special reference to amyloid and connective tissues. Arch Pathol 68:487-498.
-
(1959)
Arch Pathol
, vol.68
, pp. 487-498
-
-
Vassar, P.S.1
Culling, C.F.2
-
9
-
-
0027502784
-
Thioflavine T interaction with synthetic Alzheimer's disease beta-amyloid peptides: Detection of amyloid aggregation in solution
-
LeVine H, III (1993) Thioflavine T interaction with synthetic Alzheimer's disease beta-amyloid peptides: Detection of amyloid aggregation in solution. Protein Sci 2(3):404-410.
-
(1993)
Protein Sci
, vol.2
, Issue.3
, pp. 404-410
-
-
LeVine III, H.1
-
10
-
-
77952320068
-
Molecular mechanism of Thioflavin-T binding to amyloid fibrils
-
Biancalana M, Koide S Molecular mechanism of Thioflavin-T binding to amyloid fibrils.. Biochim Biophys Acta 1804(7):1405-1412.
-
Biochim Biophys Acta
, vol.1804
, Issue.7
, pp. 1405-1412
-
-
Biancalana, M.1
Koide, S.2
-
11
-
-
51349128031
-
A regulatable switch mediates self-association in an immunoglobulin fold
-
CalabreseMF, Eakin CM, Wang JM,Miranker AD (2008) A regulatable switch mediates self-association in an immunoglobulin fold. Nat Struct Mol Biol 15(9):965-971.
-
(2008)
Nat Struct Mol Biol
, vol.15
, Issue.9
, pp. 965-971
-
-
Calabrese, M.F.1
Eakin, C.M.2
Wang, J.M.3
Miranker, A.D.4
-
12
-
-
55849088319
-
Regulation of MHC class I assembly and peptide binding
-
Peaper DR, Cresswell P (2008) Regulation of MHC class I assembly and peptide binding. Annu Rev Cell Dev Biol 24:343-368.
-
(2008)
Annu Rev Cell Dev Biol
, vol.24
, pp. 343-368
-
-
Peaper, D.R.1
Cresswell, P.2
-
13
-
-
2942748436
-
Oligomeric assembly of native-like precursors precedes amyloid formation by beta-2 microglobulin
-
Eakin CM, Attenello FJ, Morgan CJ, Miranker AD (2004) Oligomeric assembly of native-like precursors precedes amyloid formation by beta-2 microglobulin. Biochemistry 43(24):7808-7815.
-
(2004)
Biochemistry
, vol.43
, Issue.24
, pp. 7808-7815
-
-
Eakin, C.M.1
Attenello, F.J.2
Morgan, C.J.3
Miranker, A.D.4
-
14
-
-
0035367287
-
Kidney dialysis-associated amyloidosis: A molecular role for copper in fiber formation
-
DOI 10.1006/jmbi.2001.4661
-
Morgan CJ, Gelfand M, Atreya C, Miranker AD (2001) Kidney dialysis-associated amyloidosis: A molecular role for copper in fiber formation. J Mol Biol 309(2):339-345. (Pubitemid 32553492)
-
(2001)
Journal of Molecular Biology
, vol.309
, Issue.2
, pp. 339-345
-
-
Morgan, C.J.1
Gelfand, M.2
Atreya, C.3
Miranker, A.D.4
-
15
-
-
67650325176
-
The interplay of catalysis and toxicity by amyloid intermediates on lipid bilayers: Insights from type II diabetes
-
Hebda JA, Miranker AD (2009) The interplay of catalysis and toxicity by amyloid intermediates on lipid bilayers: insights from type II diabetes. Ann Rev Biophys 38:125-152.
-
(2009)
Ann Rev Biophys
, vol.38
, pp. 125-152
-
-
Hebda, J.A.1
Miranker, A.D.2
-
16
-
-
33644813233
-
A native to amyloidogenic transition regulated by a backbone trigger
-
Eakin CM, Berman AJ, Miranker AD (2006) A native to amyloidogenic transition regulated by a backbone trigger. Nat Struct Mol Biol 13(3):202-208.
-
(2006)
Nat Struct Mol Biol
, vol.13
, Issue.3
, pp. 202-208
-
-
Eakin, C.M.1
Berman, A.J.2
Miranker, A.D.3
-
17
-
-
0028150789
-
Three-dimensional structure of a peptide extending from one end of a class I MHC binding site
-
Collins EJ, Garboczi DN, Wiley DC (1994) Three-dimensional structure of a peptide extending from one end of a class I MHC binding site. Nature 371(6498):626-629.
-
(1994)
Nature
, vol.371
, Issue.6498
, pp. 626-629
-
-
Collins, E.J.1
Garboczi, D.N.2
Wiley, D.C.3
-
18
-
-
25144489633
-
Mechanism of thioflavin T binding to amyloid fibrils
-
DOI 10.1016/j.jsb.2005.06.006, PII S1047847705001309
-
Khurana R, et al. (2005) Mechanism of thioflavin T binding to amyloid fibrils. J Struct Biol 151(3):229-238. (Pubitemid 41338730)
-
(2005)
Journal of Structural Biology
, vol.151
, Issue.3
, pp. 229-238
-
-
Khurana, R.1
Coleman, C.2
Ionescu-Zanetti, C.3
Carter, S.A.4
Krishna, V.5
Grover, R.K.6
Roy, R.7
Singh, S.8
-
19
-
-
34548380970
-
Binding mode of Thioflavin T in insulin amyloid fibrils
-
DOI 10.1016/j.jsb.2007.06.004, PII S1047847707001396
-
Groenning M, et al. (2007) Binding modeof Thioflavin T in insulin amyloid fibrils. J Struct Biol 159(3):483-497. (Pubitemid 47351257)
-
(2007)
Journal of Structural Biology
, vol.159
, Issue.3
, pp. 483-497
-
-
Groenning, M.1
Norrman, M.2
Flink, J.M.3
Van De Weert, M.4
Bukrinsky, J.T.5
Schluckebier, G.6
Frokjaer, S.7
-
20
-
-
34250698331
-
Computational study of thioflavin T torsional relaxation in the excited state
-
Stsiapura VI, Maskevich AA, Kuzmitsky VA, Turoverov KK, Kuznetsova IM (2007) Computational study of thioflavin T torsional relaxation in the excited state. J Phys Chem A 111(22):4829-4835.
-
(2007)
J Phys Chem A
, vol.111
, Issue.22
, pp. 4829-4835
-
-
Stsiapura, V.I.1
Maskevich, A.A.2
Kuzmitsky, V.A.3
Turoverov, K.K.4
Kuznetsova, I.M.5
-
21
-
-
58149175632
-
Thioflavin T as a molecular rotor: Fluorescent properties of thioflavin T in solvents with different viscosity
-
Stsiapura VI, et al. (2008) Thioflavin T as a molecular rotor: Fluorescent properties of thioflavin T in solvents with different viscosity. J Phys Chem B 112(49):15893-15902.
-
(2008)
J Phys Chem B
, vol.112
, Issue.49
, pp. 15893-15902
-
-
Stsiapura, V.I.1
-
22
-
-
45749094206
-
Crystal structure of thioflavin T bound to the peripheral site of Torpedo californica acetylcholinesterase reveals how thioflavin T acts as a sensitive fluorescent reporter of ligand binding to the acylation site
-
DOI 10.1021/ja7109822
-
Harel M, Sonoda LK, Silman I, Sussman JL, Rosenberry TL (2008) Crystal structure of thioflavin T bound to the peripheral site of Torpedo californica acetylcholinesterase reveals how thioflavin Tacts as a sensitive fluorescent reporter of ligand binding to the acylation site. J Am Chem Soc 130(25):7856-7861. (Pubitemid 351875060)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.25
, pp. 7856-7861
-
-
Harel, M.1
Sonoda, L.K.2
Silman, I.3
Sussman, J.L.4
Rosenberry, T.L.5
-
23
-
-
77649247193
-
Minimalist design of water-soluble cross-{beta} architecture
-
Biancalana M, Makabe K, Koide S (2010) Minimalist design of water-soluble cross-{beta} architecture. Proc Natl Acad Sci USA 107(8):3469-3474.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.8
, pp. 3469-3474
-
-
Biancalana, M.1
Makabe, K.2
Koide, S.3
-
24
-
-
84954358136
-
The binding of thioflavin T and its neutral analog BTA-1 to protofibrils of the Alzheimer's disease Abeta(16-22) peptide probed by molecular dynamics simulations
-
Wu C, et al. (2008) The binding of thioflavin T and its neutral analog BTA-1 to protofibrils of the Alzheimer's disease Abeta(16-22) peptide probed by molecular dynamics simulations. J Mol Biol 384(3):718-729.
-
(2008)
J Mol Biol
, vol.384
, Issue.3
, pp. 718-729
-
-
Wu, C.1
-
25
-
-
34250698331
-
Computational study of thioflavin T torsional relaxation in the excited state
-
Stsiapura VI, Maskevich AA, Kuzmitsky VA, Turoverov KK, Kuznetsova IM (2007) Computational study of thioflavin T torsional relaxation in the excited state. J Phys Chem A 111(22):4829-4835.
-
(2007)
J Phys Chem A
, vol.111
, Issue.22
, pp. 4829-4835
-
-
Stsiapura, V.I.1
Maskevich, A.A.2
Kuzmitsky, V.A.3
Turoverov, K.K.4
Kuznetsova, I.M.5
-
26
-
-
77649265357
-
Exploring the sequence determinants of amyloid structure using position-specific scoring matrices
-
Maurer-Stroh S, et al. (2010) Exploring the sequence determinants of amyloid structure using position-specific scoring matrices. Nat Methods 7:237-242.
-
(2010)
Nat Methods
, vol.7
, pp. 237-242
-
-
Maurer-Stroh, S.1
-
27
-
-
0142231517
-
Structural changes accompanying intramolecular electron transfer: Focus on twisted intramolecular charge-transfer states and structures
-
Grabowski ZR, Rotkiewicz K, Rettig W (2003) Structural changes accompanying intramolecular electron transfer: Focus on twisted intramolecular charge-transfer states and structures. Chem Rev 103(10):3899-4031.
-
(2003)
Chem Rev
, vol.103
, Issue.10
, pp. 3899-4031
-
-
Grabowski, Z.R.1
Rotkiewicz, K.2
Rettig, W.3
-
28
-
-
27944455577
-
Chiral bias of amyloid fibrils revealed by the twisted conformation of Thioflavin T: An induced circular dichroism/DFT study
-
DOI 10.1016/j.febslet.2005.10.048, PII S0014579305013177
-
Dzwolak W, Pecul M (2005) Chiral bias of amyloid fibrils revealed by the twisted conformation of Thioflavin T: An induced circular dichroism/DFT study. FEBS Lett 579(29):6601-6603. (Pubitemid 41682446)
-
(2005)
FEBS Letters
, vol.579
, Issue.29
, pp. 6601-6603
-
-
Dzwolak, W.1
Pecul, M.2
-
29
-
-
42749089759
-
Chiral bifurcation in aggregating insulin: An induced circular dichroism study
-
Loksztejn A, Dzwolak W (2008) Chiral bifurcation in aggregating insulin: An induced circular dichroism study. J Mol Biol 379(1):9-16.
-
(2008)
J Mol Biol
, vol.379
, Issue.1
, pp. 9-16
-
-
Loksztejn, A.1
Dzwolak, W.2
-
30
-
-
44549084117
-
On the binding of Thioflavin-T to HET-s amyloid fibrils assembled at pH 2
-
Sabate R, Lascu I, Saupe SJ (2008) On the binding of Thioflavin-T to HET-s amyloid fibrils assembled at pH 2. J Struct Biol 162(3):387-396.
-
(2008)
J Struct Biol
, vol.162
, Issue.3
, pp. 387-396
-
-
Sabate, R.1
Lascu, I.2
Saupe, S.J.3
-
31
-
-
34248670403
-
Study on the binding of Thioflavin T to beta-sheet-rich and non-beta-sheet cavities
-
DOI 10.1016/j.jsb.2006.12.010, PII S1047847706003923
-
Groenning M, et al. (2007) Study on the binding of Thioflavin T to beta-sheet-rich and non-beta-sheet cavities. J Struct Biol 158(3):358-369. (Pubitemid 46766672)
-
(2007)
Journal of Structural Biology
, vol.158
, Issue.3
, pp. 358-369
-
-
Groenning, M.1
Olsen, L.2
Van De Weert, M.3
Flink, J.M.4
Frokjaer, S.5
Jorgensen, F.S.6
-
32
-
-
11144222595
-
The binding of thioflavin-T to amyloid fibrils: Localisation and implications
-
Krebs MR, Bromley EH, Donald AM (2005) The binding of thioflavin-T to amyloid fibrils: Localisation and implications. J Struct Biol 149(1):30-37.
-
(2005)
J Struct Biol
, vol.149
, Issue.1
, pp. 30-37
-
-
Krebs, M.R.1
Bromley, E.H.2
Donald, A.M.3
-
33
-
-
33846426122
-
Solving structures of protein complexes by molecular replacement with Phaser
-
McCoy AJ (2007) Solving structures of protein complexes by molecular replacement with Phaser. Acta Crystallogr D 63(Pt 1):32-41.
-
(2007)
Acta Crystallogr D
, vol.63
, Issue.PART 1
, pp. 32-41
-
-
McCoy, A.J.1
-
34
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53(Pt 3):240-255.
-
(1997)
Acta Crystallogr D
, vol.53
, Issue.PART 3
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
36
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: Programs for protein crystallography. Acta Crystallogr D 50(Pt 5):760-763.
-
(1994)
Acta Crystallogr D
, vol.50
, Issue.PART 5
, pp. 760-763
-
-
-
37
-
-
14244272868
-
PHENIX: Building new software for automated crystallographic structure determination
-
Adams PD, et al. (2002) PHENIX: Building new software for automated crystallographic structure determination. Acta Crystallogr D 58(Pt 11):1948-1954.
-
(2002)
Acta Crystallogr D
, vol.58
, Issue.PART 11
, pp. 1948-1954
-
-
Adams, P.D.1
-
38
-
-
84893169025
-
General atomic and molecular electronic-structure system
-
Schmidt MW, et al. (1993) General atomic and molecular electronic-structure system. J Comput Chem 14(11):1347-1363.
-
(1993)
J Comput Chem
, vol.14
, Issue.11
, pp. 1347-1363
-
-
Schmidt, M.W.1
-
39
-
-
16444378435
-
On the non-orthogonality problem connected with the use of atomic wave functions in the theory of molecules and crystals
-
Lowdin PO (1950) On the non-orthogonality problem connected with the use of atomic wave functions in the theory of molecules and crystals. J Chem Phys 18(3):365-375.
-
(1950)
J Chem Phys
, vol.18
, Issue.3
, pp. 365-375
-
-
Lowdin, P.O.1
|