메뉴 건너뛰기




Volumn 2014, Issue , 2014, Pages

CBMAR: A comprehensive b-lactamase molecular annotation resource

Author keywords

[No Author keywords available]

Indexed keywords

BETA LACTAMASE;

EID: 84964316247     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bau111     Document Type: Article
Times cited : (41)

References (24)
  • 1
    • 14844362964 scopus 로고    scopus 로고
    • Bacterial resistance to beta-lactam antibiotics: Compelling opportunism, compelling opportunity
    • Fisher, J.F., Meroueh, S.O. and Mobashery, S. (2005) Bacterial resistance to beta-lactam antibiotics: compelling opportunism, compelling opportunity. Chem. Rev., 105, 395-424.
    • (2005) Chem. Rev. , vol.105 , pp. 395-424
    • Fisher, J.F.1    Meroueh, S.O.2    Mobashery, S.3
  • 2
    • 0015543505 scopus 로고
    • The beta-lactamases of gram-negative bacteria and their possible physiological role
    • Richmond, M.H. and Sykes, R.B. (1973) The beta-lactamases of gram-negative bacteria and their possible physiological role. Adv. Microb. Physiol., 9, 31-88.
    • (1973) Adv. Microb. Physiol. , vol.9 , pp. 31-88
    • Richmond, M.H.1    Sykes, R.B.2
  • 4
    • 0029071785 scopus 로고
    • A functional classification scheme for beta-lactamases and its correlation with molecular structure
    • Bush, K., Jacoby, G.A. and Medeiros, A.A. (1995) A functional classification scheme for beta-lactamases and its correlation with molecular structure. Antimicrob. Agents Chemother., 39, 1211-1233.
    • (1995) Antimicrob. Agents Chemother. , vol.39 , pp. 1211-1233
    • Bush, K.1    Jacoby, G.A.2    Medeiros, A.A.3
  • 5
    • 0000908299 scopus 로고
    • AmpC cephalosporinase of Escherichia coli K-12 has a different evolutionary origin from that of beta-lactamases of the penicillinase type
    • Jaurin, B. and Grundstrom, T. (1981) ampC cephalosporinase of Escherichia coli K-12 has a different evolutionary origin from that of beta-lactamases of the penicillinase type. Proc. Natl Acad. Sci. USA., 78, 4897-4901.
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 4897-4901
    • Jaurin, B.1    Grundstrom, T.2
  • 7
    • 84875910644 scopus 로고    scopus 로고
    • Antibiotics as selectors and accelerators of diversity in the mechanisms of resistance: From the resistome to genetic plasticity in the beta-lactamases world
    • Galan, J.C., Gonzalez-Candelas, F., Rolain, J.M. et al. (2013) Antibiotics as selectors and accelerators of diversity in the mechanisms of resistance: from the resistome to genetic plasticity in the beta-lactamases world. Front. Microbiol., 4, 9.
    • (2013) Front. Microbiol. , vol.4 , pp. 9
    • Galan, J.C.1    Gonzalez-Candelas, F.2    Rolain, J.M.3
  • 8
    • 84887613917 scopus 로고    scopus 로고
    • Patterns of epistasis between beneficial mutations in an antibiotic resistance gene
    • Schenk, M.F., Szendro, I.G., Salverda, M.L. et al. (2013) Patterns of epistasis between beneficial mutations in an antibiotic resistance gene. Mol. Biol. Evol., 30, 1779-1787.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 1779-1787
    • Schenk, M.F.1    Szendro, I.G.2    Salverda, M.L.3
  • 9
    • 80053445930 scopus 로고    scopus 로고
    • Network models of TEM beta-lactamase mutations coevolving under antibiotic selection show modular structure and anticipate evolutionary trajectories
    • Guthrie, V.B., Allen, J., Camps, M. et al. (2011) Network models of TEM beta-lactamase mutations coevolving under antibiotic selection show modular structure and anticipate evolutionary trajectories. PLoS Comput. Biol., 7, e1002184.
    • (2011) PLoS Comput. Biol. , vol.7
    • Guthrie, V.B.1    Allen, J.2    Camps, M.3
  • 10
    • 84866602137 scopus 로고    scopus 로고
    • Sequence-function-stability relationships in proteins from datasets of functionally annotated variants: The case of TEM beta-lactamases
    • Abriata, L.A., Salverda, M.L., Tomatis, P.E. (2012) Sequence-function-stability relationships in proteins from datasets of functionally annotated variants: the case of TEM beta-lactamases. FEBS Lett., 586, 3330-3335.
    • (2012) FEBS Lett. , vol.586 , pp. 3330-3335
    • Abriata, L.A.1    Salverda, M.L.2    Tomatis, P.E.3
  • 11
    • 58149183697 scopus 로고    scopus 로고
    • ARDB - Antibiotic resistance genes database
    • Liu, B., Pop, M. (2009) ARDB - antibiotic resistance genes database. Nucleic Acids Res., 37, D443-D447.
    • (2009) Nucleic Acids Res. , vol.37 , pp. D443-D447
    • Liu, B.1    Pop, M.2
  • 12
    • 70349567532 scopus 로고    scopus 로고
    • The lactamase engineering database: A critical survey of TEM sequences in public databases
    • Thai, Q.K., Bos, F., Pleiss, J. (2009) The Lactamase Engineering Database: a critical survey of TEM sequences in public databases. BMC Genomics, 10, 390.
    • (2009) BMC Genomics , vol.10 , pp. 390
    • Thai, Q.K.1    Bos, F.2    Pleiss, J.3
  • 14
    • 84897366258 scopus 로고    scopus 로고
    • BLAD: A comprehensive database of widely circulated beta-lactamases
    • Danishuddin, M., Hassan Baig, M., Kaushal, L. et al. (2013) BLAD: a comprehensive database of widely circulated beta-lactamases. Bioinformatics, 29, 2515-2516.
    • (2013) Bioinformatics , vol.29 , pp. 2515-2516
    • Danishuddin, M.1    Hassan Baig, M.2    Kaushal, L.3
  • 15
    • 84891804649 scopus 로고    scopus 로고
    • Database resources of the national center for biotechnology information
    • Coordinators, N.R. (2014) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 42, D7-D17.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D7-D17
    • Coordinators, N.R.1
  • 16
    • 84860833500 scopus 로고    scopus 로고
    • Reorganizing the protein space at the universal protein resource (UniProt)
    • UniProt, C. (2012) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res., 40, D71-D75.
    • (2012) Nucleic Acids Res. , vol.40 , pp. D71-D75
    • UniProt, C.1
  • 17
    • 67849122320 scopus 로고    scopus 로고
    • MEME SUITE: Tools for motif discovery and searching
    • Bailey, T.L., Boden, M., Buske, F.A. et al. (2009) MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res., 37, W202-W208.
    • (2009) Nucleic Acids Res. , vol.37 , pp. W202-W208
    • Bailey, T.L.1    Boden, M.2    Buske, F.A.3
  • 18
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G., Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 20
    • 84896273662 scopus 로고    scopus 로고
    • Identification of family specific fingerprints in beta-lactamase families
    • Srivastava, A., Singhal, N., Goel, M. et al. (2014) Identification of family specific fingerprints in beta-lactamase families. TheScientificWorldJournal, 2014, 980572.
    • (2014) TheScientificWorldJournal , vol.2014
    • Srivastava, A.1    Singhal, N.2    Goel, M.3
  • 21
    • 48449095267 scopus 로고    scopus 로고
    • PVS: A web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery
    • Garcia-Boronat, M., Diez-Rivero, C.M., Reinherz, E.L. et al. (2008) PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery. Nucleic Acids Res., 36, W35-W41.
    • (2008) Nucleic Acids Res. , vol.36 , pp. W35-W41
    • Garcia-Boronat, M.1    Diez-Rivero, C.M.2    Reinherz, E.L.3
  • 22
    • 84864285451 scopus 로고    scopus 로고
    • Discovery of conserved epitopes through sequence variability analyses
    • Flower D.D.R., Davies M., and Ranganathan S. (eds.) Springer, New York
    • Díez-Rivero, C., Reche, P. (2010) Discovery of conserved epitopes through sequence variability analyses. In: Flower D.D.R., Davies M., and Ranganathan S. (eds.). Bioinformatics for Immunomics. Springer, New York, Vol. 3, pp. 95-101.
    • (2010) Bioinformatics for Immunomics , vol.3 , pp. 95-101
    • Díez-Rivero, C.1    Reche, P.2
  • 23
    • 84940644968 scopus 로고
    • A mathematical theory of communication
    • Shannon, C.E. (1948) A mathematical theory of communication. Bell Syst. Tech. J., 27, 379-423.
    • (1948) Bell Syst. Tech. J. , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 24
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura, K., Dudley, J., Nei, M. et al. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol., 24, 1596-1599.
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.