-
1
-
-
84941271067
-
Programmable genetic circuits for pathway engineering
-
Hoynes-O'Connor, A. and Moon, T.S. (2015) Programmable genetic circuits for pathway engineering. Curr. Opin. Biotechnol., 36, 115-121.
-
(2015)
Curr. Opin. Biotechnol.
, vol.36
, pp. 115-121
-
-
Hoynes-O'Connor, A.1
Moon, T.S.2
-
2
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner, T.S., Cantor, C.R. and Collins, J.J. (2000) Construction of a genetic toggle switch in Escherichia coli. Nature, 403, 339-342.
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
3
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz, M.B. and Leibler, S. (2000) A synthetic oscillatory network of transcriptional regulators. Nature, 403, 335-338.
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
4
-
-
84868619337
-
Genetic programs constructed from layered logic gates in single cells
-
Moon, T.S., Lou, C., Tamsir, A., Stanton, B.C. and Voigt, C.A. (2012) Genetic programs constructed from layered logic gates in single cells. Nature, 491, 249-253.
-
(2012)
Nature
, vol.491
, pp. 249-253
-
-
Moon, T.S.1
Lou, C.2
Tamsir, A.3
Stanton, B.C.4
Voigt, C.A.5
-
5
-
-
84963832616
-
Robust, tunable genetic memory from protein sequestration combined with positive feedback
-
Shopera, T., Henson, W.R., Ng, A., Lee, Y.J., Ng, K. and Moon, T.S. (2015) Robust, tunable genetic memory from protein sequestration combined with positive feedback. Nucleic Acids Res., 43, 9086-9094.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 9086-9094
-
-
Shopera, T.1
Henson, W.R.2
Ng, A.3
Lee, Y.J.4
Ng, K.5
Moon, T.S.6
-
6
-
-
84868279233
-
Sequestration-based bistability enables tuning of the switching boundaries and design of a latch
-
Chen, D. and Arkin, A.P. (2012) Sequestration-based bistability enables tuning of the switching boundaries and design of a latch. Mol. Syst. Biol., 8, 620.
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 620
-
-
Chen, D.1
Arkin, A.P.2
-
7
-
-
34548856538
-
Rational design of memory in eukaryotic cells
-
Ajo-Franklin, C.M., Drubin, D.A., Eskin, J.A., Gee, E.P., Landgraf, D., Phillips, I. and Silver, P.A. (2007) Rational design of memory in eukaryotic cells. Genes Dev., 21, 2271-2276.
-
(2007)
Genes Dev.
, vol.21
, pp. 2271-2276
-
-
Ajo-Franklin, C.M.1
Drubin, D.A.2
Eskin, J.A.3
Gee, E.P.4
Landgraf, D.5
Phillips, I.6
Silver, P.A.7
-
8
-
-
84857503105
-
The imminent role of protein engineering in synthetic biology
-
Foo, J.L., Ching, C.B., Chang, M.W. and Leong, S.S. (2012) The imminent role of protein engineering in synthetic biology. Biotechnol Adv., 30, 541-549.
-
(2012)
Biotechnol Adv.
, vol.30
, pp. 541-549
-
-
Foo, J.L.1
Ching, C.B.2
Chang, M.W.3
Leong, S.S.4
-
9
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
10
-
-
78149355812
-
NUPACK: Analysis and design of nucleic acid systems
-
Zadeh, J.N., Steenberg, C.D., Bois, J.S., Wolfe, B.R., Pierce, M.B., Khan, A.R., Dirks, R.M. and Pierce, N.A. (2011) NUPACK: Analysis and design of nucleic acid systems. J. Comput. Chem., 32, 170-173.
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 170-173
-
-
Zadeh, J.N.1
Steenberg, C.D.2
Bois, J.S.3
Wolfe, B.R.4
Pierce, M.B.5
Khan, A.R.6
Dirks, R.M.7
Pierce, N.A.8
-
11
-
-
84897096810
-
Genomic mining of prokaryotic repressors for orthogonal logic gates
-
Stanton, B.C., Nielsen, A.A., Tamsir, A., Clancy, K., Peterson, T. and Voigt, C.A. (2014) Genomic mining of prokaryotic repressors for orthogonal logic gates. Nat. Chem. Biol., 10, 99-105.
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 99-105
-
-
Stanton, B.C.1
Nielsen, A.A.2
Tamsir, A.3
Clancy, K.4
Peterson, T.5
Voigt, C.A.6
-
12
-
-
84887104139
-
Orthogonal Cas9 proteins for RNA-guided gene regulation and editing
-
Esvelt, K.M., Mali, P., Braff, J.L., Moosburner, M., Yaung, S.J. and Church, G.M. (2013) Orthogonal Cas9 proteins for RNA-guided gene regulation and editing. Nat. Methods, 10, 1116-1121.
-
(2013)
Nat. Methods
, vol.10
, pp. 1116-1121
-
-
Esvelt, K.M.1
Mali, P.2
Braff, J.L.3
Moosburner, M.4
Yaung, S.J.5
Church, G.M.6
-
13
-
-
84937604736
-
A portable expression resource for engineering cross-species genetic circuits and pathways
-
Kushwaha, M. and Salis, H.M. (2015) A portable expression resource for engineering cross-species genetic circuits and pathways. Nat. Commun., 6, 7832.
-
(2015)
Nat. Commun.
, vol.6
, pp. 7832
-
-
Kushwaha, M.1
Salis, H.M.2
-
14
-
-
84897954571
-
Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals
-
Olson, E.J., Hartsough, L.A., Landry, B.P., Shroff, R. and Tabor, J.J. (2014) Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals. Nat. Methods, 11, 449-455.
-
(2014)
Nat. Methods
, vol.11
, pp. 449-455
-
-
Olson, E.J.1
Hartsough, L.A.2
Landry, B.P.3
Shroff, R.4
Tabor, J.J.5
-
15
-
-
84864634066
-
A synthetic biology framework for programming eukaryotic transcription functions
-
Khalil, A.S., Lu, T.K., Bashor, C.J., Ramirez, C.L., Pyenson, N.C., Joung, J.K. and Collins, J.J. (2012) A synthetic biology framework for programming eukaryotic transcription functions. Cell, 150, 647-658.
-
(2012)
Cell
, vol.150
, pp. 647-658
-
-
Khalil, A.S.1
Lu, T.K.2
Bashor, C.J.3
Ramirez, C.L.4
Pyenson, N.C.5
Joung, J.K.6
Collins, J.J.7
-
16
-
-
84859842558
-
Rationally designed families of orthogonal RNA regulators of translation
-
Mutalik, V.K., Qi, L., Guimaraes, J.C., Lucks, J.B. and Arkin, A.P. (2012) Rationally designed families of orthogonal RNA regulators of translation. Nat. Chem. Biol., 8, 447-454.
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 447-454
-
-
Mutalik, V.K.1
Qi, L.2
Guimaraes, J.C.3
Lucks, J.B.4
Arkin, A.P.5
-
17
-
-
79957700542
-
Versatile RNA-sensing transcriptional regulators for engineering genetic networks
-
Lucks, J.B., Qi, L., Mutalik, V.K., Wang, D. and Arkin, A.P. (2011) Versatile RNA-sensing transcriptional regulators for engineering genetic networks. Proc. Natl. Acad. Sci. U.S.A., 108, 8617-8622.
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 8617-8622
-
-
Lucks, J.B.1
Qi, L.2
Mutalik, V.K.3
Wang, D.4
Arkin, A.P.5
-
18
-
-
84455174703
-
Model-driven engineering of RNA devices to quantitatively program gene expression
-
Carothers, J.M., Goler, J.A., Juminaga, D. and Keasling, J.D. (2011) Model-driven engineering of RNA devices to quantitatively program gene expression. Science, 334, 1716-1719.
-
(2011)
Science
, vol.334
, pp. 1716-1719
-
-
Carothers, J.M.1
Goler, J.A.2
Juminaga, D.3
Keasling, J.D.4
-
19
-
-
84898878580
-
A versatile framework for microbial engineering using synthetic non-coding RNAs
-
Qi, L.S. and Arkin, A.P. (2014) A versatile framework for microbial engineering using synthetic non-coding RNAs. Nat. Rev. Microbiol., 12, 341-354.
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 341-354
-
-
Qi, L.S.1
Arkin, A.P.2
-
20
-
-
84929582121
-
Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription-translation (TX-TL) systems
-
Takahashi, M.K., Chappell, J., Hayes, C.A., Sun, Z.Z., Kim, J., Singhal, V., Spring, K.J., Al-Khabouri, S., Fall, C.P., Noireaux, V. et al. (2015) Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription-translation (TX-TL) systems. ACS Synth. Biol., 4, 503-515.
-
(2015)
ACS Synth. Biol.
, vol.4
, pp. 503-515
-
-
Takahashi, M.K.1
Chappell, J.2
Hayes, C.A.3
Sun, Z.Z.4
Kim, J.5
Singhal, V.6
Spring, K.J.7
Al-Khabouri, S.8
Fall, C.P.9
Noireaux, V.10
-
21
-
-
84934985382
-
A renaissance in RNA synthetic biology: New mechanisms, applications and tools for the future
-
Chappell, J., Watters, K.E., Takahashi, M.K. and Lucks, J.B. (2015) A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future. Curr. Opin. Chem. Biol., 28, 47-56.
-
(2015)
Curr. Opin. Chem. Biol.
, vol.28
, pp. 47-56
-
-
Chappell, J.1
Watters, K.E.2
Takahashi, M.K.3
Lucks, J.B.4
-
22
-
-
84882986957
-
Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
-
Bikard, D., Jiang, W., Samai, P., Hochschild, A., Zhang, F. and Marraffini, L.A. (2013) Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res., 41, 7429-7437.
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 7429-7437
-
-
Bikard, D.1
Jiang, W.2
Samai, P.3
Hochschild, A.4
Zhang, F.5
Marraffini, L.A.6
-
23
-
-
84908563621
-
A quantitative framework for the forward design of synthetic miRNA circuits
-
Bloom, R.J., Winkler, S.M. and Smolke, C.D. (2014) A quantitative framework for the forward design of synthetic miRNA circuits. Nat. Methods, 11, 1147-1153.
-
(2014)
Nat. Methods
, vol.11
, pp. 1147-1153
-
-
Bloom, R.J.1
Winkler, S.M.2
Smolke, C.D.3
-
24
-
-
84898955259
-
Design and application of cotranscriptional non-enzymatic RNA circuits and signal transducers
-
Bhadra, S. and Ellington, A.D. (2014) Design and application of cotranscriptional non-enzymatic RNA circuits and signal transducers. Nucleic Acids Res., 42, e58.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. e58
-
-
Bhadra, S.1
Ellington, A.D.2
-
25
-
-
84901195977
-
Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells
-
Nissim, L., Perli, S.D., Fridkin, A., Perez-Pinera, P. and Lu, T.K. (2014) Multiplexed and programmable regulation of gene networks with an integrated RNA and CRISPR/Cas toolkit in human cells. Mol. Cell, 54, 698-710.
-
(2014)
Mol. Cell
, vol.54
, pp. 698-710
-
-
Nissim, L.1
Perli, S.D.2
Fridkin, A.3
Perez-Pinera, P.4
Lu, T.K.5
-
26
-
-
84874687019
-
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
-
Qi, L.S., Larson, M.H., Gilbert, L.A., Doudna, J.A., Weissman, J.S., Arkin, A.P. and Lim, W.A. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell, 152, 1173-1183.
-
(2013)
Cell
, vol.152
, pp. 1173-1183
-
-
Qi, L.S.1
Larson, M.H.2
Gilbert, L.A.3
Doudna, J.A.4
Weissman, J.S.5
Arkin, A.P.6
Lim, W.A.7
-
27
-
-
84880571335
-
CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes
-
Gilbert, L.A., Larson, M.H., Morsut, L., Liu, Z., Brar, G.A., Torres, S.E., Stern-Ginossar, N., Brandman, O., Whitehead, E.H., Doudna, J.A. et al. (2013) CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell, 154, 442-451.
-
(2013)
Cell
, vol.154
, pp. 442-451
-
-
Gilbert, L.A.1
Larson, M.H.2
Morsut, L.3
Liu, Z.4
Brar, G.A.5
Torres, S.E.6
Stern-Ginossar, N.7
Brandman, O.8
Whitehead, E.H.9
Doudna, J.A.10
-
28
-
-
84934936070
-
Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks
-
Nielsen, A.A. and Voigt, C.A. (2014) Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks. Mol. Syst. Biol., 10, 763.
-
(2014)
Mol. Syst. Biol.
, vol.10
, pp. 763
-
-
Nielsen, A.A.1
Voigt, C.A.2
-
29
-
-
84941084492
-
Repurposing endogenous type i CRISPR-Cas systems for programmable gene repression
-
Luo, M.L., Mullis, A.S., Leenay, R.T. and Beisel, C.L. (2015) Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression. Nucleic Acids Res., 43, 674-681.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 674-681
-
-
Luo, M.L.1
Mullis, A.S.2
Leenay, R.T.3
Beisel, C.L.4
-
30
-
-
34548668642
-
Quantitative characteristics of gene regulation by small RNA
-
Levine, E., Zhang, Z., Kuhlman, T. and Hwa, T. (2007) Quantitative characteristics of gene regulation by small RNA. PLoS Biol., 5, e229.
-
(2007)
PLoS Biol.
, vol.5
, pp. e229
-
-
Levine, E.1
Zhang, Z.2
Kuhlman, T.3
Hwa, T.4
-
31
-
-
84867296607
-
Direct comparison of small RNA and transcription factor signaling
-
Hussein, R. and Lim, H.N. (2012) Direct comparison of small RNA and transcription factor signaling. Nucleic Acids Res., 40, 7269-7279.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 7269-7279
-
-
Hussein, R.1
Lim, H.N.2
-
32
-
-
84873596341
-
Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs
-
Na, D., Yoo, S.M., Chung, H., Park, H., Park, J.H. and Lee, S.Y. (2013) Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs. Nat. Biotechnol., 31, 170-174.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 170-174
-
-
Na, D.1
Yoo, S.M.2
Chung, H.3
Park, H.4
Park, J.H.5
Lee, S.Y.6
-
33
-
-
79955607368
-
Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria
-
Man, S., Cheng, R., Miao, C., Gong, Q., Gu, Y., Lu, X., Han, F. and Yu, W. (2011) Artificial trans-encoded small non-coding RNAs specifically silence the selected gene expression in bacteria. Nucleic Acids Res., 39, e50.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. e50
-
-
Man, S.1
Cheng, R.2
Miao, C.3
Gong, Q.4
Gu, Y.5
Lu, X.6
Han, F.7
Yu, W.8
-
34
-
-
84896961495
-
Improving the gene-regulation ability of small RNAs by scaffold engineering in Escherichia coli
-
Sakai, Y., Abe, K., Nakashima, S., Yoshida, W., Ferri, S., Sode, K. and Ikebukuro, K. (2014) Improving the gene-regulation ability of small RNAs by scaffold engineering in Escherichia coli. ACS Synth. Biol., 3, 152-162.
-
(2014)
ACS Synth. Biol.
, vol.3
, pp. 152-162
-
-
Sakai, Y.1
Abe, K.2
Nakashima, S.3
Yoshida, W.4
Ferri, S.5
Sode, K.6
Ikebukuro, K.7
-
35
-
-
84867191934
-
Engineering artificial small RNAs for conditional gene silencing in Escherichia coli
-
Sharma, V., Yamamura, A. and Yokobayashi, Y. (2012) Engineering artificial small RNAs for conditional gene silencing in Escherichia coli. ACS Synth. Biol., 1, 6-13.
-
(2012)
ACS Synth. Biol.
, vol.1
, pp. 6-13
-
-
Sharma, V.1
Yamamura, A.2
Yokobayashi, Y.3
-
36
-
-
78149421813
-
Bacterial antisense RNAs: How many are there, and what are they doing?
-
Thomason, M.K. and Storz, G. (2010) Bacterial antisense RNAs: how many are there, and what are they doing? Annu. Rev. Genet., 44, 167-188.
-
(2010)
Annu. Rev. Genet.
, vol.44
, pp. 167-188
-
-
Thomason, M.K.1
Storz, G.2
-
37
-
-
77951107086
-
Synthetic biology: Applications come of age
-
Khalil, A.S. and Collins, J.J. (2010) Synthetic biology: applications come of age. Nat. Rev. Genet., 11, 367-379.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 367-379
-
-
Khalil, A.S.1
Collins, J.J.2
-
38
-
-
84895962809
-
Application of TALEs, CRISPR/Cas and sRNAs as trans-acting regulators in prokaryotes
-
Copeland, M.F., Politz, M.C. and Pfleger, B.F. (2014) Application of TALEs, CRISPR/Cas and sRNAs as trans-acting regulators in prokaryotes. Curr. Opin. Biotechnol., 29, 46-54.
-
(2014)
Curr. Opin. Biotechnol.
, vol.29
, pp. 46-54
-
-
Copeland, M.F.1
Politz, M.C.2
Pfleger, B.F.3
-
39
-
-
77957679279
-
Tracking, tuning, and terminating microbial physiology using synthetic riboregulators
-
Callura, J.M., Dwyer, D.J., Isaacs, F.J., Cantor, C.R. and Collins, J.J. (2010) Tracking, tuning, and terminating microbial physiology using synthetic riboregulators. Proc. Natl. Acad. Sci. U.S.A., 107, 15898-15903.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 15898-15903
-
-
Callura, J.M.1
Dwyer, D.J.2
Isaacs, F.J.3
Cantor, C.R.4
Collins, J.J.5
-
40
-
-
61449128339
-
Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs
-
Pulvermacher, S.C., Stauffer, L.T. and Stauffer, G.V. (2009) Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs. Microbiology, 155, 115-123.
-
(2009)
Microbiology
, vol.155
, pp. 115-123
-
-
Pulvermacher, S.C.1
Stauffer, L.T.2
Stauffer, G.V.3
-
41
-
-
0002782867
-
Hfq: A bacterial Sm-like protein that mediates RNA-RNA interaction
-
Moller, T., Franch, T., Hojrup, P., Keene, D.R., Bachinger, H.P., Brennan, R.G. and Valentin-Hansen, P. (2002) Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction. Mol. Cell, 9, 23-30.
-
(2002)
Mol. Cell
, vol.9
, pp. 23-30
-
-
Moller, T.1
Franch, T.2
Hojrup, P.3
Keene, D.R.4
Bachinger, H.P.5
Brennan, R.G.6
Valentin-Hansen, P.7
-
42
-
-
79960569987
-
Rapid optimization of gene dosage in E. Coli using DIAL strains
-
Kittleson, J.T., Cheung, S. and Anderson, J.C. (2011) Rapid optimization of gene dosage in E. coli using DIAL strains. J. Biol. Eng., 5, 10.
-
(2011)
J. Biol. Eng.
, vol.5
, pp. 10
-
-
Kittleson, J.T.1
Cheung, S.2
Anderson, J.C.3
-
43
-
-
0035941485
-
Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans
-
Timmons, L., Court, D.L. and Fire, A. (2001) Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans. Gene, 263, 103-112.
-
(2001)
Gene
, vol.263
, pp. 103-112
-
-
Timmons, L.1
Court, D.L.2
Fire, A.3
-
44
-
-
41549115091
-
The complete genome sequence of Escherichia coli DH10B: Insights into the biology of a laboratory workhorse
-
Durfee, T., Nelson, R., Baldwin, S., Plunkett, G. 3rd, Burland, V., Mau, B., Petrosino, J.F., Qin, X., Muzny, D.M., Ayele, M. et al. (2008) The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J. Bacteriol., 190, 2597-2606.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 2597-2606
-
-
Durfee, T.1
Nelson, R.2
Baldwin, S.3
Plunkett, G.4
Burland, V.5
Mau, B.6
Petrosino, J.F.7
Qin, X.8
Muzny, D.M.9
Ayele, M.10
-
45
-
-
56649114274
-
A one pot, one step, precision cloning method with high throughput capability
-
Engler, C., Kandzia, R. and Marillonnet, S. (2008) A one pot, one step, precision cloning method with high throughput capability. PLoS One, 3, e3647.
-
(2008)
PLoS One
, vol.3
, pp. e3647
-
-
Engler, C.1
Kandzia, R.2
Marillonnet, S.3
-
46
-
-
78650488774
-
Nucleic acid sequence design via efficient ensemble defect optimization
-
Zadeh, J.N., Wolfe, B.R. and Pierce, N.A. (2011) Nucleic acid sequence design via efficient ensemble defect optimization. J. Comput. Chem., 32, 439-452.
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 439-452
-
-
Zadeh, J.N.1
Wolfe, B.R.2
Pierce, N.A.3
-
47
-
-
84941299991
-
De novo design of heat-repressible RNA thermosensors in E. Coli
-
Hoynes-O'Connor, A., Hinman, K., Kirchner, L. and Moon, T.S. (2015) De novo design of heat-repressible RNA thermosensors in E. coli. Nucleic Acids Res., 43, 6166-6179.
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. 6166-6179
-
-
Hoynes-O'Connor, A.1
Hinman, K.2
Kirchner, L.3
Moon, T.S.4
-
48
-
-
79955009094
-
Novel reference genes for quantifying transcriptional responses of Escherichia coli to protein overexpression by quantitative PCR
-
Zhou, K., Zhou, L., Lim, Q., Zou, R., Stephanopoulos, G. and Too, H.P. (2011) Novel reference genes for quantifying transcriptional responses of Escherichia coli to protein overexpression by quantitative PCR. BMC Mol. Biol., 12, 18.
-
(2011)
BMC Mol. Biol.
, vol.12
, pp. 18
-
-
Zhou, K.1
Zhou, L.2
Lim, Q.3
Zou, R.4
Stephanopoulos, G.5
Too, H.P.6
-
49
-
-
77955149193
-
The critical role of RNA processing and degradation in the control of gene expression
-
Arraiano, C.M., Andrade, J.M., Domingues, S., Guinote, I.B., Malecki, M., Matos, R.G., Moreira, R.N., Pobre, V., Reis, F.P., Saramago, M. et al. (2010) The critical role of RNA processing and degradation in the control of gene expression. FEMS Microbiol. Rev., 34, 883-923.
-
(2010)
FEMS Microbiol. Rev.
, vol.34
, pp. 883-923
-
-
Arraiano, C.M.1
Andrade, J.M.2
Domingues, S.3
Guinote, I.B.4
Malecki, M.5
Matos, R.G.6
Moreira, R.N.7
Pobre, V.8
Reis, F.P.9
Saramago, M.10
-
50
-
-
0035846580
-
Intrinsic double-stranded-RNA processing activity of Escherichia coli ribonuclease III lacking the dsRNA-binding domain
-
Sun, W., Jun, E. and Nicholson, A.W. (2001) Intrinsic double-stranded-RNA processing activity of Escherichia coli ribonuclease III lacking the dsRNA-binding domain. Biochemistry, 40, 14976-14984.
-
(2001)
Biochemistry
, vol.40
, pp. 14976-14984
-
-
Sun, W.1
Jun, E.2
Nicholson, A.W.3
-
51
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R., Plunkett, G. 3rd, Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F. et al. (1997) The complete genome sequence of Escherichia coli K-12. Science, 277, 1453-1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
-
52
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S.P., Rochon, Y., Franza, B.R. and Aebersold, R. (1999) Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol., 19, 1720-1730.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
53
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu, P., Vogel, C., Wang, R., Yao, X. and Marcotte, E.M. (2007) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol., 25, 117-124.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
54
-
-
84899694320
-
Principles of genetic circuit design
-
Brophy, J.A. and Voigt, C.A. (2014) Principles of genetic circuit design. Nat. Methods, 11, 508-520.
-
(2014)
Nat. Methods
, vol.11
, pp. 508-520
-
-
Brophy, J.A.1
Voigt, C.A.2
-
55
-
-
84925462732
-
Creating small transcription activating RNAs
-
Chappell, J., Takahashi, M.K. and Lucks, J.B. (2015) Creating small transcription activating RNAs. Nat. Chem. Biol., 11, 214-220.
-
(2015)
Nat. Chem. Biol.
, vol.11
, pp. 214-220
-
-
Chappell, J.1
Takahashi, M.K.2
Lucks, J.B.3
-
56
-
-
60149090021
-
The many pathways of RNA degradation
-
Houseley, J. and Tollervey, D. (2009) The many pathways of RNA degradation. Cell, 136, 763-776.
-
(2009)
Cell
, vol.136
, pp. 763-776
-
-
Houseley, J.1
Tollervey, D.2
-
57
-
-
84909963314
-
Toehold switches: De-novo-designed regulators of gene expression
-
Green, A.A., Silver, P.A., Collins, J.J. and Yin, P. (2014) Toehold switches: de-novo-designed regulators of gene expression. Cell, 159, 925-939.
-
(2014)
Cell
, vol.159
, pp. 925-939
-
-
Green, A.A.1
Silver, P.A.2
Collins, J.J.3
Yin, P.4
-
58
-
-
84869476328
-
Ribozyme-based insulator parts buffer synthetic circuits from genetic context
-
Lou, C., Stanton, B., Chen, Y.J., Munsky, B. and Voigt, C.A. (2012) Ribozyme-based insulator parts buffer synthetic circuits from genetic context. Nat. Biotechnol., 30, 1137-1142.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 1137-1142
-
-
Lou, C.1
Stanton, B.2
Chen, Y.J.3
Munsky, B.4
Voigt, C.A.5
-
59
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis, B.P., Shih, I.H., Jones-Rhoades, M.W., Bartel, D.P. and Burge, C.B. (2003) Prediction of mammalian microRNA targets. Cell, 115, 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
|