메뉴 건너뛰기




Volumn 11, Issue 3, 2016, Pages

Correction: Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of microRNAs and their target genes in soybean during Soybean mosaic virus infection (PLoS ONE (2016) 11:3 (e0150582) DOI: 10.1371/journal.pone.0150582);Genome-wide investigation using sRNA-seq, degradome-seq and transcriptome-seq reveals regulatory networks of MicroRNAs and their target genes in soybean during soybean mosaic virus infection

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA; SINGLE STRANDED RNA; TRANSFER RNA; PLANT RNA;

EID: 84962530484     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0188140     Document Type: Erratum
Times cited : (38)

References (70)
  • 1
    • 84881413993 scopus 로고    scopus 로고
    • Pivoting the plant immune system from dissection to deployment
    • 23950531
    • Dangl JL, Horvath DM, Staskawicz BJ. Pivoting the plant immune system from dissection to deployment. Science. 2013;341:746-51. doi: 10.1126/science.1236011 PMID: 23950531
    • (2013) Science , vol.341 , pp. 746-751
    • Dangl, J.L.1    Horvath, D.M.2    Staskawicz, B.J.3
  • 2
    • 78650093399 scopus 로고    scopus 로고
    • Genome evolution in plant pathogens
    • 21148378
    • Dodds PN. Genome evolution in plant pathogens. Science. 2010;330:1486-7. doi: 10.1126/science. 1200245 PMID: 21148378
    • (2010) Science , vol.330 , pp. 1486-1487
    • Dodds, P.N.1
  • 3
    • 84936934356 scopus 로고    scopus 로고
    • Dissecting the Molecular Network of Virus-Plant Interactions: The Complex Roles of Host Factors
    • 25938276
    • Wang A. Dissecting the Molecular Network of Virus-Plant Interactions: The Complex Roles of Host Factors. Annu Rev Phytopathol. 2015;53:45-66. doi: 10.1146/annurev-phyto-080614-120001 PMID: 25938276
    • (2015) Annu Rev Phytopathol , vol.53 , pp. 45-66
    • Wang, A.1
  • 4
    • 63749125379 scopus 로고    scopus 로고
    • Genetic resistance for the sustainable control of plant virus diseases: Breeding, mechanisms and durability
    • Gómez P, Rodríguez-Hernández A, Moury B, Aranda M. Genetic resistance for the sustainable control of plant virus diseases: breeding, mechanisms and durability. Euro J Plant Pathol. 2009;125:1-22.
    • (2009) Euro J Plant Pathol. , vol.125 , pp. 1-22
    • Gómez, P.1    Rodríguez-Hernández, A.2    Moury, B.3    Aranda, M.4
  • 5
    • 0001607464 scopus 로고
    • Strains of soybean mosaic virus: Classification based on virulence in resistant soybean cultivars
    • Cho EK, Goodman RM. Strains of soybean mosaic virus: classification based on virulence in resistant soybean cultivars. Phytopathol. 1979;69:467-70.
    • (1979) Phytopathol. , vol.69 , pp. 467-470
    • Cho, E.K.1    Goodman, R.M.2
  • 6
    • 0036229793 scopus 로고    scopus 로고
    • Mapping tightly linked genes controlling potyvirus infection at the Rsv1 and Rpv1 region in soybean
    • 12033629
    • Gore MA, Hayes AJ, Jeong SC, Yue YG, Buss GR, Maroof MAS. Mapping tightly linked genes controlling potyvirus infection at the Rsv1 and Rpv1 region in soybean. Genome. 2002;45:592-9. PMID: 12033629
    • (2002) Genome , vol.45 , pp. 592-599
    • Gore, M.A.1    Hayes, A.J.2    Jeong, S.C.3    Yue, Y.G.4    Buss, G.R.5    Maroof, M.A.S.6
  • 7
    • 0036156710 scopus 로고    scopus 로고
    • Characterization of SMV resistance genes in Tousan 140 and Hourei soybean
    • 11756258
    • Gunduz I, Buss GR, Chen P, Tolin SA. Characterization of SMV resistance genes in Tousan 140 and Hourei soybean. Crop Sci. 2002;42:90-5. PMID: 11756258
    • (2002) Crop Sci. , vol.42 , pp. 90-95
    • Gunduz, I.1    Buss, G.R.2    Chen, P.3    Tolin, S.A.4
  • 8
    • 0033776150 scopus 로고    scopus 로고
    • Molecular marker mapping of 4, a gene conferring resistance to all known strains of soybean mosaic virus
    • Hayes AJ, Ma G, Buss GR, Maroof MA. Molecular Marker Mapping of 4, a Gene Conferring Resistance to all Known Strains of Soybean Mosaic Virus. Crop Sci. 2000;40:1434-37.
    • (2000) Crop Sci. , vol.40 , pp. 1434-1437
    • Hayes, A.J.1    Ma, G.2    Buss, G.R.3    Maroof, M.A.4
  • 9
    • 0036156612 scopus 로고    scopus 로고
    • Genetic and Sequence Analysis of Markers Tightly Linked to the Resistance Gene, 3
    • 11756284
    • Jeong SC, Kristipati S, Hayes AJ, Maughan PJ, Noffsinger SL, Gunduz I et al. Genetic and Sequence Analysis of Markers Tightly Linked to the Resistance Gene, 3. Crop Sci. 2002;42:265-70. PMID: 11756284
    • (2002) Crop Sci. , vol.42 , pp. 265-270
    • Jeong, S.C.1    Kristipati, S.2    Hayes, A.J.3    Maughan, P.J.4    Noffsinger, S.L.5    Gunduz, I.6
  • 10
    • 27644448277 scopus 로고    scopus 로고
    • Characterization of Resistance to in Diverse Soybean Germplasm
    • Zheng C, Chen P, Gergerich R. Characterization of Resistance to in Diverse Soybean Germplasm. Crop Sci. 2005;45:2503-09.
    • (2005) Crop Sci. , vol.45 , pp. 2503-2509
    • Zheng, C.1    Chen, P.2    Gergerich, R.3
  • 11
    • 82355183896 scopus 로고    scopus 로고
    • Simultaneous mutations in multi-viral proteins are required for soybean mosaic virus to gain virulence on soybean genotypes carrying different R genes
    • 22140577
    • Chowda-Reddy RV, Sun H, Hill JH, Poysa V, Wang A. Simultaneous mutations in multi-viral proteins are required for soybean mosaic virus to gain virulence on soybean genotypes carrying different R genes. PLoS ONE. 2011;6:e28342. doi: 10.1371/journal.pone.0028342 PMID: 22140577
    • (2011) PLoS ONE , vol.6 , pp. e28342
    • Chowda-Reddy, R.V.1    Sun, H.2    Hill, J.H.3    Poysa, V.4    Wang, A.5
  • 13
    • 55749109180 scopus 로고    scopus 로고
    • Identification and molecular characterization of two naturally occurring Soybean mosaic virus isolates that are closely related but differ in their ability to overcome Rsv4 resistance
    • 18793685
    • Gagarinova AG, Babu M, Poysa V, Hill JH, Wang A. Identification and molecular characterization of two naturally occurring Soybean mosaic virus isolates that are closely related but differ in their ability to overcome Rsv4 resistance. Virus Res. 2008;138:50-6. doi: 10.1016/j.virusres.2008.08.010 PMID: 18793685
    • (2008) Virus Res. , vol.138 , pp. 50-56
    • Gagarinova, A.G.1    Babu, M.2    Poysa, V.3    Hill, J.H.4    Wang, A.5
  • 14
    • 45549091152 scopus 로고    scopus 로고
    • Association of the transcriptional response of soybean plants with Soybean mosaic virus systemic infection
    • 18343851
    • Babu M, Gagarinova AG, Brandle JE, Wang A. Association of the transcriptional response of soybean plants with Soybean mosaic virus systemic infection. J Gen Virol. 2008;89:1069-80. doi: 10.1099/vir. 0.83531-0 PMID: 18343851
    • (2008) J Gen Virol. , vol.89 , pp. 1069-1080
    • Babu, M.1    Gagarinova, A.G.2    Brandle, J.E.3    Wang, A.4
  • 15
    • 4644242349 scopus 로고    scopus 로고
    • RNA silencing in plants
    • 15372043
    • Baulcombe D. RNA silencing in plants. Nature. 2004;431:356-63. PMID: 15372043
    • (2004) Nature , vol.431 , pp. 356-363
    • Baulcombe, D.1
  • 16
    • 60049085100 scopus 로고    scopus 로고
    • Expression analysis of phytohormoneregulated microRNAs in rice, implying their regulation roles in plant hormone signaling
    • 19167382
    • Liu Q, Zhang YC, Wang CY, Luo YC, Huang QJ, Chen SY et al. Expression analysis of phytohormoneregulated microRNAs in rice, implying their regulation roles in plant hormone signaling. FEBS Lett. 2009;583:723-8. doi: 10.1016/j.febslet.2009.01.020 PMID: 19167382
    • (2009) FEBS Lett. , vol.583 , pp. 723-728
    • Liu, Q.1    Zhang, Y.C.2    Wang, C.Y.3    Luo, Y.C.4    Huang, Q.J.5    Chen, S.Y.6
  • 17
    • 84862779295 scopus 로고    scopus 로고
    • Functions of microRNAs in plant stress responses
    • 22365280
    • Sunkar R, Li YF, Jagadeeswaran G. Functions of microRNAs in plant stress responses. Trends Plant Sci. 2012;17:196-203. doi: 10.1016/j.tplants.2012.01.010 PMID: 22365280
    • (2012) Trends Plant Sci. , vol.17 , pp. 196-203
    • Sunkar, R.1    Li, Y.F.2    Jagadeeswaran, G.3
  • 18
    • 46149102667 scopus 로고    scopus 로고
    • MicroRNA-directed regulation: To cleave or not to cleave
    • 18501664
    • Mallory AC, Bouché N. MicroRNA-directed regulation: to cleave or not to cleave. Trends Plant Sci. 2008;13:359-67. doi: 10.1016/j.tplants.2008.03.007 PMID: 18501664
    • (2008) Trends Plant Sci. , vol.13 , pp. 359-367
    • Mallory, A.C.1    Bouché, N.2
  • 20
    • 24644483623 scopus 로고    scopus 로고
    • Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA
    • 16141076
    • Jopling CL, Yi M, Lancaster AM, Lemon SM. and Sarnow P. Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA. Science. 2005;309:1577-81. PMID: 16141076
    • (2005) Science , vol.309 , pp. 1577-1581
    • Jopling, C.L.1    Yi, M.2    Lancaster, A.M.3    Lemon, S.M.4    Sarnow, P.5
  • 22
    • 84919392547 scopus 로고    scopus 로고
    • Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    • 25218481
    • Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N. Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum. Virus Res. 2015;195:183-195. doi: 10.1016/j.virusres.2014.09.001 PMID: 25218481
    • (2015) Virus Res. , vol.195 , pp. 183-195
    • Pradhan, B.1    Naqvi, A.R.2    Saraf, S.3    Mukherjee, S.K.4    Dey, N.5
  • 23
    • 84867651695 scopus 로고    scopus 로고
    • Global alteration of micro-RNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection
    • Romanel E, Silva TF, Corrêa RL, Farinelli L, Hawkins JS, Schrago CEG et al. Global alteration of micro-RNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection. Mol Biol. 2012;80:443-60.
    • (2012) Mol Biol. , vol.80 , pp. 443-460
    • Romanel, E.1    Silva, T.F.2    Corrêa, R.L.3    Farinelli, L.4    Hawkins, J.S.5    Schrago, C.E.G.6
  • 24
    • 80052339278 scopus 로고    scopus 로고
    • Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    • 21901091
    • Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G et al. Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors. PLoS Pathog. 2011;7:e1002176. doi: 10. 1371/journal.ppat.1002176 PMID: 21901091
    • (2011) PLoS Pathog. , vol.7 , pp. e1002176
    • Du, P.1    Wu, J.2    Zhang, J.3    Zhao, S.4    Zheng, H.5    Gao, G.6
  • 25
    • 33845391778 scopus 로고    scopus 로고
    • Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense
    • Zhang X, Yuan YR, Pei Y, Lin SS, Tuschl T, Patel DJ et al. Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes & Develop. 2006;20:3255-68.
    • (2006) Genes & Develop. , vol.20 , pp. 3255-3268
    • Zhang, X.1    Yuan, Y.R.2    Pei, Y.3    Lin, S.S.4    Tuschl, T.5    Patel, D.J.6
  • 26
    • 55249118415 scopus 로고    scopus 로고
    • Plant virus infection-induced persistent host gene downregulation in systemically infected leaves
    • 18397378
    • Havelda Z, Várallyay É, Valoczi A, Burgyán J. Plant virus infection-induced persistent host gene downregulation in systemically infected leaves. Plant J. 2008;55(2):278-88. doi: 10.1111/j.1365-313X. 2008.03501.x PMID: 18397378
    • (2008) Plant J , vol.55 , Issue.2 , pp. 278-288
    • Havelda, Z.1    Várallyay, É.2    Valoczi, A.3    Burgyán, J.4
  • 27
    • 77958461762 scopus 로고    scopus 로고
    • Plant virus-mediated induction of miR168 is associated with repression of Argonaute1 accumulation
    • 20823831
    • Várallyay É, Válóczi A, Ágyi Á, Burgyán J, Havelda Z. Plant virus-mediated induction of miR168 is associated with repression of Argonaute1 accumulation. EMBO J. 2010;29(20):3507-19. doi: 10.1038/emboj.2010.215 PMID: 20823831
    • (2010) EMBO J , vol.29 , Issue.20 , pp. 3507-3519
    • Várallyay, É.1    Válóczi, A.2    Ágyi, A.3    Burgyán, J.4    Havelda, Z.5
  • 28
    • 84920942323 scopus 로고    scopus 로고
    • Pathogenesis of Soybean mosaic virus in soybean carrying Rsv1 gene is associated with miRNA and siRNA pathways, and breakdown of AGO1 homeostasis
    • 25591174
    • Chen H, Zhang L, Yu K, Wang A. Pathogenesis of Soybean mosaic virus in soybean carrying Rsv1 gene is associated with miRNA and siRNA pathways, and breakdown of AGO1 homeostasis. Virology. 2015;476:395-404. doi: 10.1016/j.virol.2014.12.034 PMID: 25591174
    • (2015) Virology , vol.476 , pp. 395-404
    • Chen, H.1    Zhang, L.2    Yu, K.3    Wang, A.4
  • 29
    • 84864777559 scopus 로고    scopus 로고
    • Identification of soybean seed developmental stage-specific and tissuespecific miRNA targets by degradome sequencing
    • 22799740
    • Shamimuzzaman M, Vodkin L. Identification of soybean seed developmental stage-specific and tissuespecific miRNA targets by degradome sequencing. BMC Genomics. 2012;13:310. doi: 10.1186/1471-2164-13-310 PMID: 22799740
    • (2012) BMC Genomics , vol.13 , pp. 310
    • Shamimuzzaman, M.1    Vodkin, L.2
  • 30
    • 84873045250 scopus 로고    scopus 로고
    • Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation
    • 23368765
    • Xu F, Liu Q, Chen L, Kuang J, Walk T, Wang J et al. Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation. BMC Genomics. 2013;14:66. doi: 10.1186/1471-2164-14-66 PMID: 23368765
    • (2013) BMC Genomics , vol.14 , pp. 66
    • Xu, F.1    Liu, Q.2    Chen, L.3    Kuang, J.4    Walk, T.5    Wang, J.6
  • 31
    • 84899474289 scopus 로고    scopus 로고
    • Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing
    • 23810899
    • Zhai J, Arikit S, Simon SA, Kingham BF, Meyers BC. Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing. Methods. 2014;67:84-90. doi: 10.1016/j.ymeth.2013.06.025 PMID: 23810899
    • (2014) Methods , vol.67 , pp. 84-90
    • Zhai, J.1    Arikit, S.2    Simon, S.A.3    Kingham, B.F.4    Meyers, B.C.5
  • 32
    • 82955207556 scopus 로고    scopus 로고
    • MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    • Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y et al. MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes & Develop. 2011;25:2540-53.
    • (2011) Genes & Develop. , vol.25 , pp. 2540-2553
    • Zhai, J.1    Jeong, D.H.2    De Paoli, E.3    Park, S.4    Rosen, B.D.5    Li, Y.6
  • 33
    • 84961288045 scopus 로고    scopus 로고
    • Soybean miR172c targets the repressive AP2 transcription factor NNC1 to activate ENOD40 expression and regulate nodule initiation
    • 25549672
    • Wang Y, Wang L, Zou Y, Chen L, Cai Z, Zhang S et al. Soybean miR172c targets the repressive AP2 transcription factor NNC1 to activate ENOD40 expression and regulate nodule initiation. Plant Cell. 2014;26:4782-801. doi: 10.1105/tpc.114.131607 PMID: 25549672
    • (2014) Plant Cell. , vol.26 , pp. 4782-4801
    • Wang, Y.1    Wang, L.2    Zou, Y.3    Chen, L.4    Cai, Z.5    Zhang, S.6
  • 34
    • 84907018112 scopus 로고    scopus 로고
    • Roles of small RNAs in soybean defense against Phytophthora sojae infection
    • 24944042
    • Wong J, Gao L, Yang Y, Zhai J, Arikit S, Yu Y et al. Roles of small RNAs in soybean defense against Phytophthora sojae infection. Plant J. 2014;79:928-40. doi: 10.1111/tpj.12590 PMID: 24944042
    • (2014) Plant J , vol.79 , pp. 928-940
    • Wong, J.1    Gao, L.2    Yang, Y.3    Zhai, J.4    Arikit, S.5    Yu, Y.6
  • 35
    • 84876732620 scopus 로고    scopus 로고
    • Detection and evolutionary analysis of soybean miRNAs responsive to soybean mosaic virus
    • 23328897
    • Yin X, Wang J, Cheng H, Wang X, Yu D. Detection and evolutionary analysis of soybean miRNAs responsive to soybean mosaic virus. Planta. 2013;237:1213-25. doi: 10.1007/s00425-012-1835-3 PMID: 23328897
    • (2013) Planta , vol.237 , pp. 1213-1225
    • Yin, X.1    Wang, J.2    Cheng, H.3    Wang, X.4    Yu, D.5
  • 36
    • 0037320231 scopus 로고    scopus 로고
    • P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction
    • Kasschau KD, Xie Z, Allen E, Llave C, Chapman EJ, Krizan KA et al. P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction. Develop. Cell. 2003;4:205-17.
    • (2003) Develop. Cell. , vol.4 , pp. 205-217
    • Kasschau, K.D.1    Xie, Z.2    Allen, E.3    Llave, C.4    Chapman, E.J.5    Krizan, K.A.6
  • 37
    • 2442604466 scopus 로고    scopus 로고
    • Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microrna in host gene expression
    • 15100397
    • Chen J, Li WX, Xie D, Peng JR, Ding SW. Viral virulence protein suppresses RNA silencing-mediated defense but upregulates the role of microrna in host gene expression. Plant Cell. 2004;16:1302-13. PMID: 15100397
    • (2004) Plant Cell. , vol.16 , pp. 1302-1313
    • Chen, J.1    Li, W.X.2    Xie, D.3    Peng, J.R.4    Ding, S.W.5
  • 38
    • 84860126087 scopus 로고    scopus 로고
    • A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs
    • 22408077
    • Shivaprasad PV, Chen HM, Patel K, Bond DM, Santos BA, Baulcombe DC. A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell. 2012;24:859-74. doi: 10.1105/tpc.111.095380 PMID: 22408077
    • (2012) Plant Cell. , vol.24 , pp. 859-874
    • Shivaprasad, P.V.1    Chen, H.M.2    Patel, K.3    Bond, D.M.4    Santos, B.A.5    Baulcombe, D.C.6
  • 39
    • 84927709627 scopus 로고    scopus 로고
    • Evolutionary patterns and coevolutionary consequences of MIRNA genes and MicroRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    • 25747880
    • Zhao M, Meyers BC, Cai C, Xu W, Ma J. Evolutionary Patterns and Coevolutionary Consequences of MIRNA Genes and MicroRNA Targets Triggered by Multiple Mechanisms of Genomic Duplications in Soybean. Plant Cell. 2015;27:546-62. doi: 10.1105/tpc.15.00048 PMID: 25747880
    • (2015) Plant Cell. , vol.27 , pp. 546-562
    • Zhao, M.1    Meyers, B.C.2    Cai, C.3    Xu, W.4    Ma, J.5
  • 40
    • 84907781660 scopus 로고    scopus 로고
    • Identification and characterization of wilt and salt stress-responsive microRNAs in chickpea through high-throughput sequencing
    • 25295754
    • Kohli D, Joshi G, Deokar AA, Bhardwaj AR, Agarwal M, Katiyar-Agarwal S et al. Identification and characterization of wilt and salt stress-responsive microRNAs in chickpea through high-throughput sequencing. PLoS ONE. 2014;9:e108851. doi: 10.1371/journal.pone.0108851 PMID: 25295754
    • (2014) PLoS ONE , vol.9 , pp. e108851
    • Kohli, D.1    Joshi, G.2    Deokar, A.A.3    Bhardwaj, A.R.4    Agarwal, M.5    Katiyar-Agarwal, S.6
  • 41
    • 84866167836 scopus 로고    scopus 로고
    • Genome-wide profiling of miRNAs and other small non-coding RNAs in the Verticillium dahliae-inoculated cotton roots
    • 22558219
    • Yin Z, Li Y, Han X, Shen F. Genome-wide profiling of miRNAs and other small non-coding RNAs in the Verticillium dahliae-inoculated cotton roots. PLoS ONE. 2012;7:e35765. doi: 10.1371/journal.pone. 0035765 PMID: 22558219
    • (2012) PLoS ONE , vol.7 , pp. e35765
    • Yin, Z.1    Li, Y.2    Han, X.3    Shen, F.4
  • 42
    • 80055000264 scopus 로고    scopus 로고
    • Function and evolution of a Micro-RNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth
    • 21917547
    • Wang Y, Itaya A, Zhong X, Wu Y, Zhang J, van der Knaap E et al. Function and evolution of a Micro-RNA that regulates a Ca2+-ATPase and triggers the formation of phased small interfering RNAs in tomato reproductive growth. Plant Cell. 2011;23:3185-203. doi: 10.1105/tpc.111.088013 PMID: 21917547
    • (2011) Plant Cell. , vol.23 , pp. 3185-3203
    • Wang, Y.1    Itaya, A.2    Zhong, X.3    Wu, Y.4    Zhang, J.5    Van Der Knaap, E.6
  • 43
    • 84864459173 scopus 로고    scopus 로고
    • PAREsnip: A tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing
    • 22467211
    • Folkes L, Moxon S, Woolfenden HC, Stocks M. B, Szittya G, Dalmay T et al. PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Res. 2012;40:e103. doi: 10.1093/nar/gks277 PMID: 22467211
    • (2012) Nucleic Acids Res. , vol.40 , pp. e103
    • Folkes, L.1    Moxon, S.2    Woolfenden, H.C.3    Stocks, M.B.4    Szittya, G.5    Dalmay, T.6
  • 44
    • 33750440526 scopus 로고    scopus 로고
    • A two-hit trigger for siRNA biogenesis in plants
    • 17081978
    • Axtell MJ, Jan C, Rajagopalan R, Bartel DP. A two-hit trigger for siRNA biogenesis in plants. Cell. 2006;127:565-77. PMID: 17081978
    • (2006) Cell. , vol.127 , pp. 565-577
    • Axtell, M.J.1    Jan, C.2    Rajagopalan, R.3    Bartel, D.P.4
  • 45
    • 77953193344 scopus 로고    scopus 로고
    • Mir390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
    • 20363771
    • Marin E, Jouannet V, Herz A, Lokerse AS, Weijers Dey et al. miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell. 2010;22:1104-17. doi: 10.1105/tpc.109.072553 PMID: 20363771
    • (2010) Plant Cell. , vol.22 , pp. 1104-1117
    • Marin, E.1    Jouannet, V.2    Herz, A.3    Lokerse, A.S.4    Dey, W.5
  • 46
    • 84879466274 scopus 로고    scopus 로고
    • MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA Biogenesis in Eudicots
    • 23695981
    • Xia R, Meyers BC, Liu Z, Beers EP, Ye S, Liu Z. MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA Biogenesis in Eudicots. Plant Cell. 2013;25:1555-72. doi: 10.1105/tpc.113.110957 PMID: 23695981
    • (2013) Plant Cell. , vol.25 , pp. 1555-1572
    • Xia, R.1    Meyers, B.C.2    Liu, Z.3    Beers, E.P.4    Ye, S.5    Liu, Z.6
  • 47
    • 84864387624 scopus 로고    scopus 로고
    • Eukaryotic translation initiation factor 4E-mediated recessive resistance to plant viruses and its utility in crop improvement
    • 22379950
    • Wang A, Krishnaswamy S. Eukaryotic translation initiation factor 4E-mediated recessive resistance to plant viruses and its utility in crop improvement. Mol Plant Pathol. 2012;13:795-803. doi: 10.1111/j. 1364-3703.2012.00791.x PMID: 22379950
    • (2012) Mol Plant Pathol. , vol.13 , pp. 795-803
    • Wang, A.1    Krishnaswamy, S.2
  • 48
    • 47549107247 scopus 로고    scopus 로고
    • Gain of virulence on Rsv1-genotype soybean by an avirulent Soybean mosaic virus requires concurrent mutations in both P3 and HC-Pro
    • Eggenberger AL, Hajimorad MR, Hill JH. Gain of virulence on Rsv1-genotype soybean by an avirulent Soybean mosaic virus requires concurrent mutations in both P3 and HC-Pro. Mol Plant-Microbe Interac. 2008;21:931-36.
    • (2008) Mol Plant-Microbe Interac. , vol.21 , pp. 931-936
    • Eggenberger, A.L.1    Hajimorad, M.R.2    Hill, J.H.3
  • 50
    • 17944366026 scopus 로고    scopus 로고
    • The Arabidopsis sex1 mutant is defective in the R1 protein, a general regulator of starch degradation in plants, and not in the chloroplast hexose transporter
    • 11487701
    • Yu TS, Kofler H, Hausler RE, Hille D, Flugge UI, Zeeman SC et al. The Arabidopsis sex1 mutant is defective in the R1 protein, a general regulator of starch degradation in plants, and not in the chloroplast hexose transporter. Plant Cell. 2001;13:1907-18. PMID: 11487701
    • (2001) Plant Cell. , vol.13 , pp. 1907-1918
    • Yu, T.S.1    Kofler, H.2    Hausler, R.E.3    Hille, D.4    Flugge, U.I.5    Zeeman, S.C.6
  • 51
    • 84855699824 scopus 로고    scopus 로고
    • Oncogenic viruses and tumor glucose metabolism: Like kids in a candy store
    • Noch E, Khalili K. Oncogenic viruses and tumor glucose metabolism: like kids in a candy store. Mol Cancer Therapeutics. 2012;11:14-23.
    • (2012) Mol Cancer Therapeutics , vol.11 , pp. 14-23
    • Noch, E.1    Khalili, K.2
  • 52
    • 84901477996 scopus 로고    scopus 로고
    • Diisopropylamine dichloroacetate, a novel pyruvate dehydrogenase kinase 4 inhibitor, as a potential therapeutic agent for metabolic disorders and multiorgan failure in severe influenza
    • 24865588
    • Yamane K, Indalao IL, Chida J, Yamamoto Y, Hanawa M, Kido H. Diisopropylamine dichloroacetate, a novel pyruvate dehydrogenase kinase 4 inhibitor, as a potential therapeutic agent for metabolic disorders and multiorgan failure in severe influenza. PLoS ONE. 2014;9:e98032. doi: 10.1371/journal. pone.0098032 PMID: 24865588
    • (2014) PLoS ONE , vol.9 , pp. e98032
    • Yamane, K.1    Indalao, I.L.2    Chida, J.3    Yamamoto, Y.4    Hanawa, M.5    Kido, H.6
  • 53
    • 84919728359 scopus 로고    scopus 로고
    • Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice
    • Alam MM, Nakamura H, Ichikawa H, Miyao A, Hirochika H, Kobayashi K et al. Response of an aspartic protease gene OsAP77 to fungal, bacterial and viral infections in rice. Rice. 2014;7:1-14.
    • (2014) Rice , vol.7 , pp. 1-14
    • Alam, M.M.1    Nakamura, H.2    Ichikawa, H.3    Miyao, A.4    Hirochika, H.5    Kobayashi, K.6
  • 54
    • 33947262696 scopus 로고    scopus 로고
    • AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2
    • 17382880
    • Vasudevan S, Steitz JA. AU-rich-element-mediated upregulation of translation by FXR1 and Argonaute 2. Cell 2007;128:1105-18. PMID: 17382880
    • (2007) Cell , vol.128 , pp. 1105-1118
    • Vasudevan, S.1    Steitz, J.A.2
  • 55
    • 68449097267 scopus 로고    scopus 로고
    • MIR-145 and MIR-143 regulate smooth muscle cell fate and plasticity
    • 19578358
    • Cordes KR, Sheehy NT, White MP et al. MiR-145 and miR-143 regulate smooth muscle cell fate and plasticity. Nature 2009;460:705-10. doi: 10.1038/nature08195 PMID: 19578358
    • (2009) Nature , vol.460 , pp. 705-710
    • Cordes, K.R.1    Sheehy, N.T.2    White, M.P.3
  • 56
    • 84922393865 scopus 로고    scopus 로고
    • MIR-145 inhibits osteosarcoma cells proliferation and invasion by targeting ROCK1
    • 24801908
    • Li E, Zhang J, Yuan T, Ma B. miR-145 inhibits osteosarcoma cells proliferation and invasion by targeting ROCK1. Tumour Biology 2014;35:7645-50. doi: 10.1007/s13277-014-2031-9 PMID: 24801908
    • (2014) Tumour Biology , vol.35 , pp. 7645-7650
    • Li, E.1    Zhang, J.2    Yuan, T.3    Ma, B.4
  • 57
    • 79958034625 scopus 로고    scopus 로고
    • A KLF4-miRNA-206 autoregulatory feedback loop can promote or inhibit protein translation depending upon cell context
    • 21518959
    • Lin CC, Liu LZ, Addison JB, Wonderlin WF, Ivanov AW, Ruppert JM. A KLF4-miRNA-206 autoregulatory feedback loop can promote or inhibit protein translation depending upon cell context. Mol Cell Biol. 2011;31:2513-27. doi: 10.1128/MCB.01189-10 PMID: 21518959
    • (2011) Mol Cell Biol. , vol.31 , pp. 2513-2527
    • Lin, C.C.1    Liu, L.Z.2    Addison, J.B.3    Wonderlin, W.F.4    Ivanov, A.W.5    Ruppert, J.M.6
  • 58
    • 0141571240 scopus 로고    scopus 로고
    • Evolution of Soybean mosaic virus-G7 molecularly cloned genome in Rsv1-genotype soybean results in emergence of a mutant capable of evading Rsv1-mediated recognition
    • 14554079
    • Hajimorad MR, Eggenberger AL, Hill JH. Evolution of Soybean mosaic virus-G7 molecularly cloned genome in Rsv1-genotype soybean results in emergence of a mutant capable of evading Rsv1-mediated recognition. Virology. 2003;314:497-509. PMID: 14554079
    • (2003) Virology , vol.314 , pp. 497-509
    • Hajimorad, M.R.1    Eggenberger, A.L.2    Hill, J.H.3
  • 59
    • 0035055343 scopus 로고    scopus 로고
    • Rsv1-mediated resistance against Soybean mosaic virus-N is hypersensitive response-independent at inoculation site, but has the potential to initiate a hypersensitive response-like mechanism
    • Hajimorad MR, Hill JH. Rsv1-mediated resistance against Soybean mosaic virus-N is hypersensitive response-independent at inoculation site, but has the potential to initiate a hypersensitive response-like mechanism. Mol Plant-Microbe Interac. 2001;14:587-98.
    • (2001) Mol Plant-Microbe Interac. , vol.14 , pp. 587-598
    • Hajimorad, M.R.1    Hill, J.H.2
  • 60
    • 34548687914 scopus 로고    scopus 로고
    • Construction of small RNA cDNA libraries for deep sequencing
    • 17889797
    • Lu C, Meyers BC, Green PJ. Construction of small RNA cDNA libraries for deep sequencing. Methods. 2007;43:110-17. PMID: 17889797
    • (2007) Methods , vol.43 , pp. 110-117
    • Lu, C.1    Meyers, B.C.2    Green, P.J.3
  • 61
    • 63849207321 scopus 로고    scopus 로고
    • Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome
    • German MA, Luo S, Schroth G, Meyers BC, Green PJ. Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nature Prot. 2009;4:356-62.
    • (2009) Nature Prot. , vol.4 , pp. 356-362
    • German, M.A.1    Luo, S.2    Schroth, G.3    Meyers, B.C.4    Green, P.J.5
  • 63
    • 84875042712 scopus 로고    scopus 로고
    • Using RNA-Seq to profile soybean seed development from fertilization to maturity
    • 23555009
    • Jones SI, Vodkin LO. Using RNA-Seq to profile soybean seed development from fertilization to maturity. PLoS ONE. 2013;8:e59270. doi: 10.1371/journal.pone.0059270 PMID: 23555009
    • (2013) PLoS ONE , vol.8 , pp. e59270
    • Jones, S.I.1    Vodkin, L.O.2
  • 64
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods. 2008;5:621-8. doi: 10.1038/nmeth.1226 PMID: 18516045
    • (2008) Nature Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 66
    • 57149110022 scopus 로고    scopus 로고
    • High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA
    • 18940866
    • Mestdagh P, Feys T, Bernard N, Guenther S, Chen C, Speleman F et al. High-throughput stem-loop RT-qPCR miRNA expression profiling using minute amounts of input RNA. Nucleic Acids Res. 2008;36:e143. doi: 10.1093/nar/gkn725 PMID: 18940866
    • (2008) Nucleic Acids Res. , vol.36 , pp. e143
    • Mestdagh, P.1    Feys, T.2    Bernard, N.3    Guenther, S.4    Chen, C.5    Speleman, F.6
  • 69
    • 79959967431 scopus 로고    scopus 로고
    • Psrnatarget: A plant small RNA target analysis server
    • 21622958
    • Dai X, Zhao PX. psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res. 2011;39:W155-159. doi: 10.1093/nar/gkr319 PMID: 21622958
    • (2011) Nucleic Acids Res. , vol.39 , pp. W155-W159
    • Dai, X.1    Zhao, P.X.2
  • 70
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • 14597658
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13:2498-504. PMID: 14597658
    • (2003) Genome Res. , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.