메뉴 건너뛰기




Volumn 14, Issue 1, 2013, Pages

Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation

Author keywords

Deep sequencing; Degradome; Genome; Leaf; MicroRNA; Phosphorus; RLM 5' RACE; Root; Soybean

Indexed keywords

MICRORNA; PHOSPHATE; NUCLEOTIDE;

EID: 84873045250     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-14-66     Document Type: Article
Times cited : (128)

References (71)
  • 1
    • 60149086351 scopus 로고    scopus 로고
    • Origin, biogenesis, and activity of plant microRNAs
    • 10.1016/j.cell.2009.01.046, 19239888
    • Voinnet O. Origin, biogenesis, and activity of plant microRNAs. Cell 2009, 136(4):669-687. 10.1016/j.cell.2009.01.046, 19239888.
    • (2009) Cell , vol.136 , Issue.4 , pp. 669-687
    • Voinnet, O.1
  • 2
    • 33645525893 scopus 로고    scopus 로고
    • MicroRNAs and their regulatory roles in plants
    • 10.1146/annurev.arplant.57.032905.105218, 16669754
    • Jones-Rhoades M, Bartel D, Bartel B. MicroRNAs and their regulatory roles in plants. Annu Rev Plant Biol 2006, 57:19-53. 10.1146/annurev.arplant.57.032905.105218, 16669754.
    • (2006) Annu Rev Plant Biol , vol.57 , pp. 19-53
    • Jones-Rhoades, M.1    Bartel, D.2    Bartel, B.3
  • 3
    • 8144225486 scopus 로고    scopus 로고
    • MicroRNA genes are transcribed by RNA polymerase II
    • 10.1038/sj.emboj.7600385, 524334, 15372072
    • Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN. MicroRNA genes are transcribed by RNA polymerase II. EMBO J 2004, 23(20):4051-4060. 10.1038/sj.emboj.7600385, 524334, 15372072.
    • (2004) EMBO J , vol.23 , Issue.20 , pp. 4051-4060
    • Lee, Y.1    Kim, M.2    Han, J.3    Yeom, K.H.4    Lee, S.5    Baek, S.H.6    Kim, V.N.7
  • 4
    • 18344369543 scopus 로고    scopus 로고
    • MicroRNA biogenesis: coordinated cropping and dicing
    • Kim VN. MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell Biol 2005, 6(5):376-385.
    • (2005) Nat Rev Mol Cell Biol , vol.6 , Issue.5 , pp. 376-385
    • Kim, V.N.1
  • 5
    • 41349114789 scopus 로고    scopus 로고
    • Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide
    • 10.1016/j.cell.2008.02.034, 2981139, 18342361
    • Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. Cell 2008, 133:116-127. 10.1016/j.cell.2008.02.034, 2981139, 18342361.
    • (2008) Cell , vol.133 , pp. 116-127
    • Mi, S.1    Cai, T.2    Hu, Y.3    Chen, Y.4    Hodges, E.5    Ni, F.6    Wu, L.7    Li, S.8    Zhou, H.9    Long, C.10    Chen, S.11    Hannon, G.J.12    Qi, Y.13
  • 6
    • 2942672580 scopus 로고    scopus 로고
    • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    • 10.1016/j.molcel.2004.05.027, 15200956
    • Jones-Rhoades MW, Bartel DP. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell 2004, 14(6):787-799. 10.1016/j.molcel.2004.05.027, 15200956.
    • (2004) Mol Cell , vol.14 , Issue.6 , pp. 787-799
    • Jones-Rhoades, M.W.1    Bartel, D.P.2
  • 7
    • 33644872219 scopus 로고    scopus 로고
    • Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation
    • 10.1111/j.1365-313X.2005.02629.x, 16460506
    • Shin H, Shin HS, Chen R, Harrison MJ. Loss of At4 function impacts phosphate distribution between the roots and the shoots during phosphate starvation. Plant J 2006, 45(5):712-726. 10.1111/j.1365-313X.2005.02629.x, 16460506.
    • (2006) Plant J , vol.45 , Issue.5 , pp. 712-726
    • Shin, H.1    Shin, H.S.2    Chen, R.3    Harrison, M.J.4
  • 8
    • 41849109875 scopus 로고    scopus 로고
    • MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis
    • 10.1111/j.1365-313X.2007.03363.x, 2268993, 17988220
    • Pant BD, Buhtz A, Kehr J, Scheible WR. MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J 2008, 53(5):731-738. 10.1111/j.1365-313X.2007.03363.x, 2268993, 17988220.
    • (2008) Plant J , vol.53 , Issue.5 , pp. 731-738
    • Pant, B.D.1    Buhtz, A.2    Kehr, J.3    Scheible, W.R.4
  • 10
    • 71049136041 scopus 로고    scopus 로고
    • Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing
    • 10.1104/pp.109.147280, 2785986, 19854858
    • Hsieh LC, Lin SI, Shih ACC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ. Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing. Plant Physiol 2009, 151(4):2120-2132. 10.1104/pp.109.147280, 2785986, 19854858.
    • (2009) Plant Physiol , vol.151 , Issue.4 , pp. 2120-2132
    • Hsieh, L.C.1    Lin, S.I.2    Shih, A.C.C.3    Chen, J.W.4    Lin, W.Y.5    Tseng, C.Y.6    Li, W.H.7    Chiou, T.J.8
  • 11
    • 67650156804 scopus 로고    scopus 로고
    • Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
    • 10.1104/pp.109.139139, 2705054, 19465578
    • Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR. Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol 2009, 150(3):1541-1555. 10.1104/pp.109.139139, 2705054, 19465578.
    • (2009) Plant Physiol , vol.150 , Issue.3 , pp. 1541-1555
    • Pant, B.D.1    Musialak-Lange, M.2    Nuc, P.3    May, P.4    Buhtz, A.5    Kehr, J.6    Walther, D.7    Scheible, W.R.8
  • 12
    • 77950632672 scopus 로고    scopus 로고
    • Phloem small RNAs, nutrient stress responses, and systemic mobility
    • 10.1186/1471-2229-10-64, 2923538, 20388194
    • Buhtz A, Pieritz J, Springer F, Kehr J. Phloem small RNAs, nutrient stress responses, and systemic mobility. BMC Plant Biol 2010, 10:64. 10.1186/1471-2229-10-64, 2923538, 20388194.
    • (2010) BMC Plant Biol , vol.10 , pp. 64
    • Buhtz, A.1    Pieritz, J.2    Springer, F.3    Kehr, J.4
  • 13
    • 77749264610 scopus 로고    scopus 로고
    • Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana
    • 10.1073/pnas.0909571107, 2840086, 20142497
    • Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA. Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2010, 107(9):4477-4482. 10.1073/pnas.0909571107, 2840086, 20142497.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , Issue.9 , pp. 4477-4482
    • Vidal, E.A.1    Araus, V.2    Lu, C.3    Parry, G.4    Green, P.J.5    Coruzzi, G.M.6    Gutiérrez, R.A.7
  • 14
    • 58349096093 scopus 로고    scopus 로고
    • Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types
    • 10.1111/j.1365-313X.2008.03690.x, 18801012
    • Kawashima CG, Yoshimoto N, Maruyama-Nakashita A, Tsuchiya YN, Saito K, Takahashi H, Dalmay T. Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. Plant J 2009, 57(2):313-321. 10.1111/j.1365-313X.2008.03690.x, 18801012.
    • (2009) Plant J , vol.57 , Issue.2 , pp. 313-321
    • Kawashima, C.G.1    Yoshimoto, N.2    Maruyama-Nakashita, A.3    Tsuchiya, Y.N.4    Saito, K.5    Takahashi, H.6    Dalmay, T.7
  • 15
    • 33747505089 scopus 로고    scopus 로고
    • Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance
    • 10.1105/tpc.106.041673, 1533975, 16861386
    • Sunkar R, Kapoor A, Zhu JK. Posttranscriptional induction of two Cu/Zn superoxide dismutase genes in Arabidopsis is mediated by downregulation of miR398 and important for oxidative stress tolerance. Plant Cell 2006, 18(8):2051-2065. 10.1105/tpc.106.041673, 1533975, 16861386.
    • (2006) Plant Cell , vol.18 , Issue.8 , pp. 2051-2065
    • Sunkar, R.1    Kapoor, A.2    Zhu, J.K.3
  • 16
    • 41849084853 scopus 로고    scopus 로고
    • Identification and characterization of small RNAs from the phloem of Brassica napus
    • 10.1111/j.1365-313X.2007.03368.x, 18005229
    • Buhtz A, Springer F, Chappell L, Baulcombe DC, Kehr J. Identification and characterization of small RNAs from the phloem of Brassica napus. Plant J 2008, 53(5):739-749. 10.1111/j.1365-313X.2007.03368.x, 18005229.
    • (2008) Plant J , vol.53 , Issue.5 , pp. 739-749
    • Buhtz, A.1    Springer, F.2    Chappell, L.3    Baulcombe, D.C.4    Kehr, J.5
  • 17
    • 42549136362 scopus 로고    scopus 로고
    • New and nodulation-regulated microRNAs in soybean roots
    • 10.1186/1471-2164-9-160, 2335117, 18402695
    • Subramanian S, Fu Y, Sunkar R, Barbazuk W, Zhu J, Yu O. New and nodulation-regulated microRNAs in soybean roots. BMC Genomics 2008, 9:160. 10.1186/1471-2164-9-160, 2335117, 18402695.
    • (2008) BMC Genomics , vol.9 , pp. 160
    • Subramanian, S.1    Fu, Y.2    Sunkar, R.3    Barbazuk, W.4    Zhu, J.5    Yu, O.6
  • 18
    • 56649120500 scopus 로고    scopus 로고
    • Identification of soybean microRNAs and their targets
    • 10.1007/s00425-008-0818-x, 18815805
    • Zhang B, Pan X, Stellwag E. Identification of soybean microRNAs and their targets. Planta 2008, 229:161-182. 10.1007/s00425-008-0818-x, 18815805.
    • (2008) Planta , vol.229 , pp. 161-182
    • Zhang, B.1    Pan, X.2    Stellwag, E.3
  • 20
    • 78650971549 scopus 로고    scopus 로고
    • Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing
    • 10.1186/1471-2229-11-5, 3023735, 21219599
    • Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS. Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. BMC Plant Biol 2011, 11:5. 10.1186/1471-2229-11-5, 3023735, 21219599.
    • (2011) BMC Plant Biol , vol.11 , pp. 5
    • Song, Q.X.1    Liu, Y.F.2    Hu, X.Y.3    Zhang, W.K.4    Ma, B.5    Chen, S.Y.6    Zhang, J.S.7
  • 22
    • 33745636695 scopus 로고    scopus 로고
    • Characterization of root architecture in an applied core collection for phosphorus efficiency of soybean germplasm
    • Zhao J, Fu J, Liao H, He Y, Nian H, Hu Y, Qiu L, Dong Y, Yan X. Characterization of root architecture in an applied core collection for phosphorus efficiency of soybean germplasm. Chin Sci Bull 2004, 49(13):1249-1257.
    • (2004) Chin Sci Bull , vol.49 , Issue.13 , pp. 1249-1257
    • Zhao, J.1    Fu, J.2    Liao, H.3    He, Y.4    Nian, H.5    Hu, Y.6    Qiu, L.7    Dong, Y.8    Yan, X.9
  • 23
    • 84863012576 scopus 로고    scopus 로고
    • Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
    • 10.1105/tpc.111.089045, 3269859, 22158467, Meyers BC
    • Jeong DH, Park S, Zhai J, Gurazada SGR, De Paoli E, Green PJ, Meyers BC Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell 2011, 23(12):4185-4207. 10.1105/tpc.111.089045, 3269859, 22158467, Meyers BC.
    • (2011) Plant Cell , vol.23 , Issue.12 , pp. 4185-4207
    • Jeong, D.H.1    Park, S.2    Zhai, J.3    Gurazada, S.G.R.4    De Paoli, E.5    Green, P.J.6
  • 24
    • 79955779744 scopus 로고    scopus 로고
    • PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs
    • 10.1093/bioinformatics/btr153, 21441575
    • Xuan P, Guo M, Liu X, Huang Y, Li W, Huang Y. PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs. Bioinformatics 2011, 27(10):1368-1376. 10.1093/bioinformatics/btr153, 21441575.
    • (2011) Bioinformatics , vol.27 , Issue.10 , pp. 1368-1376
    • Xuan, P.1    Guo, M.2    Liu, X.3    Huang, Y.4    Li, W.5    Huang, Y.6
  • 27
    • 84864777559 scopus 로고    scopus 로고
    • Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing
    • 10.1186/1471-2164-13-310, 3410764, 22799740
    • Shamimuzzaman M, Vodkin L. Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing. BMC Genomics 2012, 13:310. 10.1186/1471-2164-13-310, 3410764, 22799740.
    • (2012) BMC Genomics , vol.13 , pp. 310
    • Shamimuzzaman, M.1    Vodkin, L.2
  • 28
    • 84860539155 scopus 로고    scopus 로고
    • Genome organization and characteristics of soybean microRNAs
    • 10.1186/1471-2164-13-169, 3481472, 22559273
    • Turner M, Yu O, Subramanian S. Genome organization and characteristics of soybean microRNAs. BMC Genomics 2012, 13:169. 10.1186/1471-2164-13-169, 3481472, 22559273.
    • (2012) BMC Genomics , vol.13 , pp. 169
    • Turner, M.1    Yu, O.2    Subramanian, S.3
  • 29
    • 77954299992 scopus 로고    scopus 로고
    • AgriGO: a GO analysis toolkit for the agricultural community
    • (Web Server issue)
    • Du Z, Zhou X, Ling Y, Zhang Z, Su Z. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 2010 38:W64-W70. (Web Server issue).
    • Nucleic Acids Res 2010 , vol.38
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 30
    • 33745960196 scopus 로고    scopus 로고
    • PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants
    • 10.1104/pp.106.079707, 1489890, 16679424
    • Bari R, Datt P, Stitt M, Scheible W. PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants. Plant Physiol 2006, 141:988-999. 10.1104/pp.106.079707, 1489890, 16679424.
    • (2006) Plant Physiol , vol.141 , pp. 988-999
    • Bari, R.1    Datt, P.2    Stitt, M.3    Scheible, W.4
  • 31
    • 77955662130 scopus 로고    scopus 로고
    • Analysis of phosphorus-deficient responsive miRNAs and cis-elements from soybean (Glycine max L.)
    • 10.1016/j.jplph.2010.04.017, 20591534
    • Zeng HQ, Zhu YY, Huang SQ, Yang ZM. Analysis of phosphorus-deficient responsive miRNAs and cis-elements from soybean (Glycine max L.). J Plant Physiol 2010, 167(15):1289-1297. 10.1016/j.jplph.2010.04.017, 20591534.
    • (2010) J Plant Physiol , vol.167 , Issue.15 , pp. 1289-1297
    • Zeng, H.Q.1    Zhu, Y.Y.2    Huang, S.Q.3    Yang, Z.M.4
  • 32
    • 84960125795 scopus 로고    scopus 로고
    • Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica)
    • Zhou M, Gu L, Li P, Song X, Wei L, Chen Z, Cao X. Degradome sequencing reveals endogenous small RNA targets in rice (Oryza sativa L. ssp. indica). Front Biol 2010, 5:67-90.
    • (2010) Front Biol , vol.5 , pp. 67-90
    • Zhou, M.1    Gu, L.2    Li, P.3    Song, X.4    Wei, L.5    Chen, Z.6    Cao, X.7
  • 33
    • 43449091567 scopus 로고    scopus 로고
    • Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome
    • 10.1016/j.cub.2008.04.042, 2583427, 18472421
    • Addo-Quaye C, Eshoo T, Bartel D, Axtell M. Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. Curr Biol 2008, 18:758-762. 10.1016/j.cub.2008.04.042, 2583427, 18472421.
    • (2008) Curr Biol , vol.18 , pp. 758-762
    • Addo-Quaye, C.1    Eshoo, T.2    Bartel, D.3    Axtell, M.4
  • 36
    • 74549221016 scopus 로고    scopus 로고
    • Genome sequence of the palaeopolyploid soybean
    • 10.1038/nature08670, 20075913
    • Schmutz J, Cannon S, Schlueter J, Ma J, Mitros T. Genome sequence of the palaeopolyploid soybean. Nature 2010, 463:178-183. 10.1038/nature08670, 20075913.
    • (2010) Nature , vol.463 , pp. 178-183
    • Schmutz, J.1    Cannon, S.2    Schlueter, J.3    Ma, J.4    Mitros, T.5
  • 37
    • 74549195029 scopus 로고    scopus 로고
    • Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)
    • 10.1186/1471-2229-9-149, 2803185, 20017947
    • Zhu QH, Upadhyaya NM, Gubler F, Helliwell CA. Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa). BMC Plant Biol 2009, 9:149. 10.1186/1471-2229-9-149, 2803185, 20017947.
    • (2009) BMC Plant Biol , vol.9 , pp. 149
    • Zhu, Q.H.1    Upadhyaya, N.M.2    Gubler, F.3    Helliwell, C.A.4
  • 38
    • 0345445907 scopus 로고    scopus 로고
    • Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity
    • 10.1105/tpc.014928, 280559, 14555694
    • Werner T, Motyka V, Laucou V, Smets R, Van Onckelen H, Schmülling T. Cytokinin-deficient transgenic Arabidopsis plants show multiple developmental alterations indicating opposite functions of cytokinins in the regulation of shoot and root meristem activity. Plant Cell 2003, 15(11):2532-2550. 10.1105/tpc.014928, 280559, 14555694.
    • (2003) Plant Cell , vol.15 , Issue.11 , pp. 2532-2550
    • Werner, T.1    Motyka, V.2    Laucou, V.3    Smets, R.4    Van Onckelen, H.5    Schmülling, T.6
  • 39
    • 24944493388 scopus 로고    scopus 로고
    • MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes
    • 10.1105/tpc.105.031716, 1091760, 15829600
    • Mallory A, Bartel D, Bartel B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Plant Cell 2005, 17(5):1360-1375. 10.1105/tpc.105.031716, 1091760, 15829600.
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1360-1375
    • Mallory, A.1    Bartel, D.2    Bartel, B.3
  • 40
    • 72049120376 scopus 로고    scopus 로고
    • Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance
    • 10.1105/tpc.108.064758, 2782293, 19820192
    • Gutierrez L, Bussell JD, Pacurar DI, Schwambach J, Pacurar M, Bellini C. Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. Plant Cell 2009, 21(10):3119-3132. 10.1105/tpc.108.064758, 2782293, 19820192.
    • (2009) Plant Cell , vol.21 , Issue.10 , pp. 3119-3132
    • Gutierrez, L.1    Bussell, J.D.2    Pacurar, D.I.3    Schwambach, J.4    Pacurar, M.5    Bellini, C.6
  • 41
    • 70350669278 scopus 로고    scopus 로고
    • Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    • 10.1105/tpc.109.068130, 2768930, 19767456
    • Lelandais-Brière C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M. Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules. Plant Cell 2009, 21(9):2780-2796. 10.1105/tpc.109.068130, 2768930, 19767456.
    • (2009) Plant Cell , vol.21 , Issue.9 , pp. 2780-2796
    • Lelandais-Brière, C.1    Naya, L.2    Sallet, E.3    Calenge, F.4    Frugier, F.5    Hartmann, C.6    Gouzy, J.7    Crespi, M.8
  • 42
    • 77955159749 scopus 로고    scopus 로고
    • MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity
    • 10.1111/j.1469-8137.2010.03320.x, 20553393
    • Valdès-López O, Yang SS, Aparicio-Fabre R, Graham PH, Reyes JL, Vance CP, Hernández G. MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity. New Phytol 2010, 187(3):805-818. 10.1111/j.1469-8137.2010.03320.x, 20553393.
    • (2010) New Phytol , vol.187 , Issue.3 , pp. 805-818
    • Valdès-López, O.1    Yang, S.S.2    Aparicio-Fabre, R.3    Graham, P.H.4    Reyes, J.L.5    Vance, C.P.6    Hernández, G.7
  • 43
    • 70449528642 scopus 로고    scopus 로고
    • MicroRNA expression profiles associated with phosphorus deficiency in white lupin (Lupinus albus L.)
    • Zhu YY, Zeng HQ, Dong CX, Yin XM, Shen QR, Yang ZM. microRNA expression profiles associated with phosphorus deficiency in white lupin (Lupinus albus L.). Plant Sci 2010, 178:23-29.
    • (2010) Plant Sci , vol.178 , pp. 23-29
    • Zhu, Y.Y.1    Zeng, H.Q.2    Dong, C.X.3    Yin, X.M.4    Shen, Q.R.5    Yang, Z.M.6
  • 44
    • 77953228918 scopus 로고    scopus 로고
    • Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosis
    • 10.1094/MPMI-23-7-0915, 20521954
    • Branscheid A, Sieh D, Pant BD, May P, Devers EA, Elkrog A, Schauser L, Scheible WR, Krajinski F. Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosis. Mol Plant Microbe Interact 2010, 23(7):915-926. 10.1094/MPMI-23-7-0915, 20521954.
    • (2010) Mol Plant Microbe Interact , vol.23 , Issue.7 , pp. 915-926
    • Branscheid, A.1    Sieh, D.2    Pant, B.D.3    May, P.4    Devers, E.A.5    Elkrog, A.6    Schauser, L.7    Scheible, W.R.8    Krajinski, F.9
  • 45
    • 79961204641 scopus 로고    scopus 로고
    • Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    • 10.1104/pp.111.172627, 3149951, 21571671
    • Devers EA, Branscheid A, May P, Krajinski F. Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. Plant Physiol 2011, 156(4):1990-2010. 10.1104/pp.111.172627, 3149951, 21571671.
    • (2011) Plant Physiol , vol.156 , Issue.4 , pp. 1990-2010
    • Devers, E.A.1    Branscheid, A.2    May, P.3    Krajinski, F.4
  • 46
    • 68749095252 scopus 로고    scopus 로고
    • MiR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana
    • 10.1016/j.cell.2009.06.014, 19703399
    • Wang JW, Czech B, Weigel D. miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana. Cell 2009, 138(4):738-749. 10.1016/j.cell.2009.06.014, 19703399.
    • (2009) Cell , vol.138 , Issue.4 , pp. 738-749
    • Wang, J.W.1    Czech, B.2    Weigel, D.3
  • 47
    • 42149177744 scopus 로고    scopus 로고
    • The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis
    • 10.1007/s11103-008-9310-z, 2295252, 18278578
    • Schwarz S, Grande AV, Bujdoso N, Saedler H, Huijser P. The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis. Plant Mol Biol 2008, 67(1-2):183-195. 10.1007/s11103-008-9310-z, 2295252, 18278578.
    • (2008) Plant Mol Biol , vol.67 , Issue.1-2 , pp. 183-195
    • Schwarz, S.1    Grande, A.V.2    Bujdoso, N.3    Saedler, H.4    Huijser, P.5
  • 48
    • 66149162003 scopus 로고    scopus 로고
    • A microRNA-transcription factor module regulates lateral organ size and patterning in Arabidopsis
    • 10.1111/j.1365-313X.2009.03796.x, 19154203
    • Larue CT, Wen J, Walker JC. A microRNA-transcription factor module regulates lateral organ size and patterning in Arabidopsis. Plant J 2009, 58(3):450-463. 10.1111/j.1365-313X.2009.03796.x, 19154203.
    • (2009) Plant J , vol.58 , Issue.3 , pp. 450-463
    • Larue, C.T.1    Wen, J.2    Walker, J.C.3
  • 49
    • 33645071049 scopus 로고    scopus 로고
    • Developmental and seasonal expression of PtaHB1, a Populus gene encoding a class III HD-Zip protein, is closely associated with secondary growth and inversely correlated with the level of microRNA (miR166)
    • 10.1111/j.1469-8137.2005.01623.x, 16411950
    • Ko JH, Prassinos C, Han KH. Developmental and seasonal expression of PtaHB1, a Populus gene encoding a class III HD-Zip protein, is closely associated with secondary growth and inversely correlated with the level of microRNA (miR166). New Phytol 2006, 169(3):469-478. 10.1111/j.1469-8137.2005.01623.x, 16411950.
    • (2006) New Phytol , vol.169 , Issue.3 , pp. 469-478
    • Ko, J.H.1    Prassinos, C.2    Han, K.H.3
  • 50
    • 79955782917 scopus 로고    scopus 로고
    • Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis
    • 10.1111/j.1469-8137.2011.03647.x, 3586203, 21348874
    • Zhao M, Ding H, Zhu JK, Zhang F, Li WX. Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis. New Phytol 2011, 190(4):906-915. 10.1111/j.1469-8137.2011.03647.x, 3586203, 21348874.
    • (2011) New Phytol , vol.190 , Issue.4 , pp. 906-915
    • Zhao, M.1    Ding, H.2    Zhu, J.K.3    Zhang, F.4    Li, W.X.5
  • 51
    • 33644850179 scopus 로고    scopus 로고
    • The CLAVATA1-related BAM1, BAM2 and BAM3 receptor kinase-like proteins are required for meristem function in Arabidopsis
    • 10.1111/j.1365-313X.2005.02592.x, 16367950
    • DeYoung BJ, Bickle KL, Schrage KJ, Muskett P, Patel K, Clark SE. The CLAVATA1-related BAM1, BAM2 and BAM3 receptor kinase-like proteins are required for meristem function in Arabidopsis. Plant J 2006, 45:1-16. 10.1111/j.1365-313X.2005.02592.x, 16367950.
    • (2006) Plant J , vol.45 , pp. 1-16
    • DeYoung, B.J.1    Bickle, K.L.2    Schrage, K.J.3    Muskett, P.4    Patel, K.5    Clark, S.E.6
  • 52
    • 84864704953 scopus 로고    scopus 로고
    • The high-affinity phosphate transporter GmPT5 regulates phosphate transport to nodules and nodulation in soybean
    • 10.1104/pp.112.199786, 3425202, 22740613
    • Qin L, Zhao J, Tian J, Chen L, Sun Z, Guo Y, Lu X, Gu M, Xu G, Liao H. The high-affinity phosphate transporter GmPT5 regulates phosphate transport to nodules and nodulation in soybean. Plant Physiol 2012, 159(4):1634-1643. 10.1104/pp.112.199786, 3425202, 22740613.
    • (2012) Plant Physiol , vol.159 , Issue.4 , pp. 1634-1643
    • Qin, L.1    Zhao, J.2    Tian, J.3    Chen, L.4    Sun, Z.5    Guo, Y.6    Lu, X.7    Gu, M.8    Xu, G.9    Liao, H.10
  • 53
    • 2442650370 scopus 로고    scopus 로고
    • The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development
    • 10.1101/gad.1201404, 415643, 15131082
    • Peragine A, Yoshikawa M, Wu G, Albrecht H, Poethig R. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev 2004, 18:1187-1197. 10.1101/gad.1201404, 415643, 15131082.
    • (2004) Genes Dev , vol.18 , pp. 1187-1197
    • Peragine, A.1    Yoshikawa, M.2    Wu, G.3    Albrecht, H.4    Poethig, R.5
  • 54
    • 84862778018 scopus 로고    scopus 로고
    • Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis
    • 10.1111/j.1365-313X.2011.04883.x, 22248025
    • Yuan H, Liu D. Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis. Plant J 2012, 70(3):432-444. 10.1111/j.1365-313X.2011.04883.x, 22248025.
    • (2012) Plant J , vol.70 , Issue.3 , pp. 432-444
    • Yuan, H.1    Liu, D.2
  • 55
    • 0037162702 scopus 로고    scopus 로고
    • Prediction of plant microRNA targets
    • 10.1016/S0092-8674(02)00863-2, 12202040
    • Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP. Prediction of plant microRNA targets. Cell 2002, 110(4):513-520. 10.1016/S0092-8674(02)00863-2, 12202040.
    • (2002) Cell , vol.110 , Issue.4 , pp. 513-520
    • Rhoades, M.W.1    Reinhart, B.J.2    Lim, L.P.3    Burge, C.B.4    Bartel, B.5    Bartel, D.P.6
  • 56
    • 33646191642 scopus 로고    scopus 로고
    • DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7
    • 10.1016/j.cub.2006.03.035, 16682354
    • Adenot X, Elmayan T, Lauressergues D, Boutet S, Bouché N, Gasciolli V, Vaucheret H. DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr Biol 2006, 16(9):927-932. 10.1016/j.cub.2006.03.035, 16682354.
    • (2006) Curr Biol , vol.16 , Issue.9 , pp. 927-932
    • Adenot, X.1    Elmayan, T.2    Lauressergues, D.3    Boutet, S.4    Bouché, N.5    Gasciolli, V.6    Vaucheret, H.7
  • 57
    • 44949257231 scopus 로고    scopus 로고
    • OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress
    • 10.1093/jxb/ern072, 2413282, 18441339
    • Li D, Liu H, Zhang H, Wang X, Song F. OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress. J Exp Bot 2008, 59(8):2133-2146. 10.1093/jxb/ern072, 2413282, 18441339.
    • (2008) J Exp Bot , vol.59 , Issue.8 , pp. 2133-2146
    • Li, D.1    Liu, H.2    Zhang, H.3    Wang, X.4    Song, F.5
  • 58
    • 76049126414 scopus 로고    scopus 로고
    • MiR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula
    • 10.1007/s00425-009-1078-0, 20012085
    • Trindade I, Capitão C, Dalmay T, Fevereiro MP, Santos DMD. miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta 2010, 231(3):705-716. 10.1007/s00425-009-1078-0, 20012085.
    • (2010) Planta , vol.231 , Issue.3 , pp. 705-716
    • Trindade, I.1    Capitão, C.2    Dalmay, T.3    Fevereiro, M.P.4    Santos, D.M.D.5
  • 60
    • 61749088524 scopus 로고    scopus 로고
    • Molecular and functional characterization of the plastid-localized Phosphoenolpyruvate enolase (ENO1) from Arabidopsis thaliana
    • 10.1016/j.febslet.2009.02.017, 19223001
    • Prabhakar V, Löttgert T, Gigolashvili T, Bell K, Flügge UI, Häusler RE. Molecular and functional characterization of the plastid-localized Phosphoenolpyruvate enolase (ENO1) from Arabidopsis thaliana. FEBS Lett 2009, 583(6):983-991. 10.1016/j.febslet.2009.02.017, 19223001.
    • (2009) FEBS Lett , vol.583 , Issue.6 , pp. 983-991
    • Prabhakar, V.1    Löttgert, T.2    Gigolashvili, T.3    Bell, K.4    Flügge, U.I.5    Häusler, R.E.6
  • 62
    • 70450202930 scopus 로고    scopus 로고
    • Low phosphate signaling induces changes in cell cycle gene expression by increasing auxin sensitivity in the Arabidopsis root system
    • 10.4161/psb.4.8.9230, 2801399, 19820337
    • Pérez Torres CA, López Bucio J, Herrera Estrella L. Low phosphate signaling induces changes in cell cycle gene expression by increasing auxin sensitivity in the Arabidopsis root system. Plant Signal Behav 2009, 4(8):781-783. 10.4161/psb.4.8.9230, 2801399, 19820337.
    • (2009) Plant Signal Behav , vol.4 , Issue.8 , pp. 781-783
    • Pérez Torres, C.A.1    López Bucio, J.2    Herrera Estrella, L.3
  • 63
    • 79959981474 scopus 로고    scopus 로고
    • Phosphate deprivation in maize: genetics and genomics
    • 10.1104/pp.111.174987, 3135936, 21617030
    • Calderón-Vázquez C, Sawers RJH, Herrera-Estrella L. Phosphate deprivation in maize: genetics and genomics. Plant Physiol 2011, 156(3):1067-1077. 10.1104/pp.111.174987, 3135936, 21617030.
    • (2011) Plant Physiol , vol.156 , Issue.3 , pp. 1067-1077
    • Calderón-Vázquez, C.1    Sawers, R.J.H.2    Herrera-Estrella, L.3
  • 64
    • 0343879238 scopus 로고
    • Assay of inorganic phosphate, total phosphate and phosphatases
    • Ames B. Assay of inorganic phosphate, total phosphate and phosphatases. Methods Enzymol 1966, 6:115-118.
    • (1966) Methods Enzymol , vol.6 , pp. 115-118
    • Ames, B.1
  • 65
    • 79955423321 scopus 로고    scopus 로고
    • A soybean β-expansin gene GmEXPB2 intrinsically involved in root system architecture responses to abiotic stresses
    • 10.1111/j.1365-313X.2011.04511.x, 21261763
    • Guo W, Zhao J, Li X, Qin L, Yan X, Liao H. A soybean β-expansin gene GmEXPB2 intrinsically involved in root system architecture responses to abiotic stresses. Plant J 2011, 66(3):541-552. 10.1111/j.1365-313X.2011.04511.x, 21261763.
    • (2011) Plant J , vol.66 , Issue.3 , pp. 541-552
    • Guo, W.1    Zhao, J.2    Li, X.3    Qin, L.4    Yan, X.5    Liao, H.6
  • 66
    • 7244257594 scopus 로고    scopus 로고
    • PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR
    • 10.1093/bioinformatics/bth254, 15073005
    • Marshall OJ. PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR. Bioinformatics 2004, 20(15):2471-2472. 10.1093/bioinformatics/bth254, 15073005.
    • (2004) Bioinformatics , vol.20 , Issue.15 , pp. 2471-2472
    • Marshall, O.J.1
  • 67
    • 58049220318 scopus 로고    scopus 로고
    • CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets
    • 10.1093/bioinformatics/btn604, 3202307, 19017659
    • Addo-Quaye C, Miller W, Axtell M. CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Bioinformatics 2009, 25:130-131. 10.1093/bioinformatics/btn604, 3202307, 19017659.
    • (2009) Bioinformatics , vol.25 , pp. 130-131
    • Addo-Quaye, C.1    Miller, W.2    Axtell, M.3
  • 68
    • 67349287414 scopus 로고    scopus 로고
    • Insights into the mechanism of plant development: interactions of miRNAs pathway with phytormone response
    • 10.1016/j.bbrc.2009.04.028, 19366618
    • Liu Q, Chen YQ. Insights into the mechanism of plant development: interactions of miRNAs pathway with phytormone response. Biochem Biophys Res Commun 2009, 384:1-5. 10.1016/j.bbrc.2009.04.028, 19366618.
    • (2009) Biochem Biophys Res Commun , vol.384 , pp. 1-5
    • Liu, Q.1    Chen, Y.Q.2
  • 69
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • 10.1093/bioinformatics/btp336, 19497933
    • Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 2009, 25(15):1966-1967. 10.1093/bioinformatics/btp336, 19497933.
    • (2009) Bioinformatics , vol.25 , Issue.15 , pp. 1966-1967
    • Li, R.1    Yu, C.2    Li, Y.3    Lam, T.W.4    Yiu, S.M.5    Kristiansen, K.6    Wang, J.7
  • 70
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • 10.1093/nar/gkg595, 169194, 12824337
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003, 31(13):3406-3415. 10.1093/nar/gkg595, 169194, 12824337.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1
  • 71
    • 77956228246 scopus 로고    scopus 로고
    • The use of microRNAs as reference genes for quantitative polymerase chain reaction in soybean
    • 10.1016/j.ab.2010.07.020, 20670612
    • Kulcheski FR, Marcelino-Guimaraes FC, Nepomuceno AL, Abdelnoor RV, Margis R. The use of microRNAs as reference genes for quantitative polymerase chain reaction in soybean. Anal Biochem 2010, 406(2):185-192. 10.1016/j.ab.2010.07.020, 20670612.
    • (2010) Anal Biochem , vol.406 , Issue.2 , pp. 185-192
    • Kulcheski, F.R.1    Marcelino-Guimaraes, F.C.2    Nepomuceno, A.L.3    Abdelnoor, R.V.4    Margis, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.