-
1
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, et al. (2010) Genome sequence of the palaeopolyploid soybean. Nature 463: 178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
-
2
-
-
34250661465
-
Using genomics to study legume seed development
-
Le BH, Wagmaister JA, Kawashima T, Bui AQ, Harada JJ, et al. (2007) Using genomics to study legume seed development. Plant Physiol 144: 562-574.
-
(2007)
Plant Physiol
, vol.144
, pp. 562-574
-
-
Le, B.H.1
Wagmaister, J.A.2
Kawashima, T.3
Bui, A.Q.4
Harada, J.J.5
-
3
-
-
84863853995
-
Large-scale sequencing of normalized full-length cDNA library of soybean seed at different developmental stages and analysis of the gene expression profiles based on ESTs
-
Sha AH, Li C, Yan XH, Shan ZH, Zhou XA, et al. (2012) Large-scale sequencing of normalized full-length cDNA library of soybean seed at different developmental stages and analysis of the gene expression profiles based on ESTs. Mol Biol Rep 39: 2867-2874.
-
(2012)
Mol Biol Rep
, vol.39
, pp. 2867-2874
-
-
Sha, A.H.1
Li, C.2
Yan, X.H.3
Shan, Z.H.4
Zhou, X.A.5
-
4
-
-
85102326196
-
Reproductive morphology
-
In: Boerma HR, Specht JE, editors, Madison WI: American Society of Agronomy
-
Carlson JB, Lersten NR (2004) Reproductive morphology. In: Boerma HR, Specht JE, editors. Soybeans: improvement, production, and uses. Madison WI: American Society of Agronomy. 59-95.
-
(2004)
Soybeans: Improvement, production, and uses
, pp. 59-95
-
-
Carlson, J.B.1
Lersten, N.R.2
-
6
-
-
0003032039
-
Reproductive development
-
In: Buchanan BB, Gruissem W, Jones RL, editors, Rockville MD: American Society of Plant Physiologists
-
Bewley JD, Hempel FD, McCormick S, Zambryski P (2000) Reproductive development. In: Buchanan BB, Gruissem W, Jones RL, editors. Biochemistry and molecular biology of plants. Rockville MD: American Society of Plant Physiologists. 988-1043.
-
(2000)
Biochemistry and molecular biology of plants
, pp. 988-1043
-
-
Bewley, J.D.1
Hempel, F.D.2
McCormick, S.3
Zambryski, P.4
-
7
-
-
77951169414
-
Flux of transcript patterns during soybean seed development
-
Jones SI, Gonzalez DO, Vodkin LO, (2010) Flux of transcript patterns during soybean seed development. BMC Genomics 11: 136.
-
(2010)
BMC Genomics
, vol.11
, pp. 136
-
-
Jones, S.I.1
Gonzalez, D.O.2
Vodkin, L.O.3
-
8
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
9
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, William BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
William, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
10
-
-
0037311919
-
TM4: a free, open-source system for microarray data management and analysis
-
Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34: 374-378.
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
-
11
-
-
0024720617
-
Developmentally regulated expression of soybean proline-rich cell wall protein genes
-
Hong JC, Nagao RT, Key JL, (1989) Developmentally regulated expression of soybean proline-rich cell wall protein genes. Plant Cell 1: 937-943.
-
(1989)
Plant Cell
, vol.1
, pp. 937-943
-
-
Hong, J.C.1
Nagao, R.T.2
Key, J.L.3
-
12
-
-
0026175595
-
A soybean cell wall protein is affected by seed color genotype
-
Lindstrom JT, Vodkin LO, (1991) A soybean cell wall protein is affected by seed color genotype. Plant Cell 3: 561-571.
-
(1991)
Plant Cell
, vol.3
, pp. 561-571
-
-
Lindstrom, J.T.1
Vodkin, L.O.2
-
13
-
-
0033136360
-
Identification of senescence-associated genes from daylily petals
-
Panavas T, Pikula A, Reid PD, Rubinstein B, Walker EL, (1999) Identification of senescence-associated genes from daylily petals. Plant Mol Biol 40: 237-248.
-
(1999)
Plant Mol Biol
, vol.40
, pp. 237-248
-
-
Panavas, T.1
Pikula, A.2
Reid, P.D.3
Rubinstein, B.4
Walker, E.L.5
-
15
-
-
0001084976
-
Expression of storage-protein genes during soybean seed development
-
Meinke DW, Chen J, Beachy RN, (1981) Expression of storage-protein genes during soybean seed development. Planta 153: 130-139.
-
(1981)
Planta
, vol.153
, pp. 130-139
-
-
Meinke, D.W.1
Chen, J.2
Beachy, R.N.3
-
16
-
-
0024619591
-
Characterization of the glycinin gene family in soybean
-
Nielsen NC, Dickinson CD, Cho TJ, Thanh VH, Scallon BJ, et al. (1989) Characterization of the glycinin gene family in soybean. Plant Cell 1: 313-328.
-
(1989)
Plant Cell
, vol.1
, pp. 313-328
-
-
Nielsen, N.C.1
Dickinson, C.D.2
Cho, T.J.3
Thanh, V.H.4
Scallon, B.J.5
-
17
-
-
84855770497
-
Global gene expression profiles in developing soybean seeds
-
Asakura T, Tamura T, Terauchi K, Narikawa T, Yagasaki K, et al. (2012) Global gene expression profiles in developing soybean seeds. Plant Physiol Biochem 52: 147-153.
-
(2012)
Plant Physiol Biochem
, vol.52
, pp. 147-153
-
-
Asakura, T.1
Tamura, T.2
Terauchi, K.3
Narikawa, T.4
Yagasaki, K.5
-
18
-
-
79957876295
-
Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis
-
Peng FY, Weselake RJ, (2011) Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis. BMC Genomics 12: 286.
-
(2011)
BMC Genomics
, vol.12
, pp. 286
-
-
Peng, F.Y.1
Weselake, R.J.2
-
19
-
-
0000491770
-
Specific soybean lipoxygenases localize to discrete subcellular compartments and their mRNAs are differentially regulated by source-sink status
-
Stephenson LC, Bunker TW, Dubbs WE, Grimes HD, (1998) Specific soybean lipoxygenases localize to discrete subcellular compartments and their mRNAs are differentially regulated by source-sink status. Plant Physiol 116: 923-933.
-
(1998)
Plant Physiol
, vol.116
, pp. 923-933
-
-
Stephenson, L.C.1
Bunker, T.W.2
Dubbs, W.E.3
Grimes, H.D.4
-
21
-
-
0037052578
-
Isolation of lipoxygenase isoforms from Glycine max embryo axes based on apparent cross-reactivity with anti-myosin antibodies
-
Islas-Flores I, Corrales-Villamar S, Bearer E, Raya JC, Villanueva MA, (2002) Isolation of lipoxygenase isoforms from Glycine max embryo axes based on apparent cross-reactivity with anti-myosin antibodies. Biochim Biophys Acta 1571: 64-70.
-
(2002)
Biochim Biophys Acta
, vol.1571
, pp. 64-70
-
-
Islas-Flores, I.1
Corrales-Villamar, S.2
Bearer, E.3
Raya, J.C.4
Villanueva, M.A.5
-
22
-
-
0019185338
-
Polyadenylated RNA sequences which are reduced in concentration following auxin treatment of soybean hypocotyls
-
Baulcombe DC, Key JL, (1980) Polyadenylated RNA sequences which are reduced in concentration following auxin treatment of soybean hypocotyls. J Biol Chem 255: 8907-13.
-
(1980)
J Biol Chem
, vol.255
, pp. 8907-8913
-
-
Baulcombe, D.C.1
Key, J.L.2
-
23
-
-
0037507700
-
Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean
-
Thibaud-Nissen F, Shealy RT, Khanna A, Vodkin LO, (2003) Clustering of microarray data reveals transcript patterns associated with somatic embryogenesis in soybean. Plant Physiol 132: 118-136.
-
(2003)
Plant Physiol
, vol.132
, pp. 118-136
-
-
Thibaud-Nissen, F.1
Shealy, R.T.2
Khanna, A.3
Vodkin, L.O.4
-
24
-
-
41449118753
-
Specific elements of the glyoxylate pathway play a significant role in the functional transition of the soybean cotyledon during seedling development
-
Gonzalez DO, Vodkin LO, (2007) Specific elements of the glyoxylate pathway play a significant role in the functional transition of the soybean cotyledon during seedling development. BMC Genomics 8: 468.
-
(2007)
BMC Genomics
, vol.8
, pp. 468
-
-
Gonzalez, D.O.1
Vodkin, L.O.2
-
25
-
-
0027140360
-
Molecular responses to water deficit
-
Bray EB, (1993) Molecular responses to water deficit. Plant Physiol 103: 1035-1040.
-
(1993)
Plant Physiol
, vol.103
, pp. 1035-1040
-
-
Bray, E.B.1
-
26
-
-
0034007384
-
Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit
-
Garay-Arroyo A, Colmenero-Flores JM, Garciarrubio A, Covarrubias AA, (2000) Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit. J Biol Chem 275: 5668-5674.
-
(2000)
J Biol Chem
, vol.275
, pp. 5668-5674
-
-
Garay-Arroyo, A.1
Colmenero-Flores, J.M.2
Garciarrubio, A.3
Covarrubias, A.A.4
-
27
-
-
0034816095
-
The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed
-
Nesi N, Jond C, Debeaujon I, Caboche M, Lepiniec L, (2001) The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed. Plant Cell 13: 2099-2114.
-
(2001)
Plant Cell
, vol.13
, pp. 2099-2114
-
-
Nesi, N.1
Jond, C.2
Debeaujon, I.3
Caboche, M.4
Lepiniec, L.5
-
28
-
-
79960921597
-
TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds
-
Appelhagen I, Lu GH, Huep G, Schmelzer E, Weisshaar B, et al. (2011) TRANSPARENT TESTA1 interacts with R2R3-MYB factors and affects early and late steps of flavonoid biosynthesis in the endothelium of Arabidopsis thaliana seeds. Plant J 67: 406-419.
-
(2011)
Plant J
, vol.67
, pp. 406-419
-
-
Appelhagen, I.1
Lu, G.H.2
Huep, G.3
Schmelzer, E.4
Weisshaar, B.5
-
29
-
-
24944457267
-
Surge and destroy: the role of auxin in plant embryogenesis
-
Jenik PD, Barton MK, (2005) Surge and destroy: the role of auxin in plant embryogenesis. Development 132: 3577-85.
-
(2005)
Development
, vol.132
, pp. 3577-3585
-
-
Jenik, P.D.1
Barton, M.K.2
-
30
-
-
84864777559
-
Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing
-
Shamimuzzaman M, Vodkin L, (2012) Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing. BMC Genomics 13: 310.
-
(2012)
BMC Genomics
, vol.13
, pp. 310
-
-
Shamimuzzaman, M.1
Vodkin, L.2
-
31
-
-
72049114156
-
Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in Glycine max seed coats
-
Tuteja JH, Zabala G, Varala K, Hudson M, Vodkin LO, (2009) Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in Glycine max seed coats. Plant Cell 21: 3063-3077.
-
(2009)
Plant Cell
, vol.21
, pp. 3063-3077
-
-
Tuteja, J.H.1
Zabala, G.2
Varala, K.3
Hudson, M.4
Vodkin, L.O.5
-
32
-
-
84866791265
-
Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max
-
Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, et al. (2012) Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max. BMC Plant Biol 12: 177.
-
(2012)
BMC Plant Biol
, vol.12
, pp. 177
-
-
Zabala, G.1
Campos, E.2
Varala, K.K.3
Bloomfield, S.4
Jones, S.I.5
-
33
-
-
57749110646
-
The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance
-
Li WX, Oono Y, Zhu J, He XJ, Wu JM, et al. (2008) The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. Plant Cell 20: 2238-2251.
-
(2008)
Plant Cell
, vol.20
, pp. 2238-2251
-
-
Li, W.X.1
Oono, Y.2
Zhu, J.3
He, X.J.4
Wu, J.M.5
-
34
-
-
79960144673
-
Functions and application of the AP2/ERF transcription factor family in crop improvement
-
Xu ZS, Chen M, Li LC, Ma YZ, (2011) Functions and application of the AP2/ERF transcription factor family in crop improvement. J Integr Plant Biol 53: 570-585.
-
(2011)
J Integr Plant Biol
, vol.53
, pp. 570-585
-
-
Xu, Z.S.1
Chen, M.2
Li, L.C.3
Ma, Y.Z.4
-
35
-
-
77956175784
-
AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signaling
-
Dietz KJ, Vogel MO, Viehhauser A, (2010) AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signaling. Protoplasma 245: 3-14.
-
(2010)
Protoplasma
, vol.245
, pp. 3-14
-
-
Dietz, K.J.1
Vogel, M.O.2
Viehhauser, A.3
-
36
-
-
13744249762
-
NAC transcription factors: structurally distinct, functionally diverse
-
Olsen AN, Ernst HA, Leggio L, Skriver K, (2005) NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci 10: 79-87.
-
(2005)
Trends Plant Sci
, vol.10
, pp. 79-87
-
-
Olsen, A.N.1
Ernst, H.A.2
Leggio, L.3
Skriver, K.4
-
37
-
-
80052005755
-
Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress
-
Le DT, Nishiyama R, Watanabe Y, Mochida K, Yamaguchi-Shinozaki K, et al. (2011) Genome-wide survey and expression analysis of the plant-specific NAC transcription factor family in soybean during development and dehydration stress. DNA Res 18: 263-276.
-
(2011)
DNA Res
, vol.18
, pp. 263-276
-
-
Le, D.T.1
Nishiyama, R.2
Watanabe, Y.3
Mochida, K.4
Yamaguchi-Shinozaki, K.5
-
38
-
-
84856585935
-
Phytozome: a comparative platform for green plant genomics
-
Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, et al. (2012) Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 40: D1178-D1186.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
-
39
-
-
81255129648
-
Transcript profiling reveals expression differences in wild-type and glabrous soybean lines
-
Hunt M, Kaur N, Strömvik M, Vodkin L, (2011) Transcript profiling reveals expression differences in wild-type and glabrous soybean lines. BMC Plant Biol 11: 145.
-
(2011)
BMC Plant Biol
, vol.11
, pp. 145
-
-
Hunt, M.1
Kaur, N.2
Strömvik, M.3
Vodkin, L.4
-
40
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
41
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
|