Identification and molecular characterization of two naturally occurring Soybean mosaic virus isolates that are closely related but differ in their ability to overcome Rsv4 resistance

Virus Research

Volumn 138, Issue 1-2, 2008, Pages 50-56

  Gagarinova, Alla G ^a,b   Babu, Mohan ^a   Poysa, Vaino ^c   Hill, John H ^d   Wang, Aiming ^a,b  

^a AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^b UNIVERSITY OF WESTERN ONTARIO   (Canada)

^c HARROW RESEARCH AND DEVELOPMENT CENTRE   (Canada)

^d IOWA STATE UNIVERSITY   (United States)

Author keywords

Mutation; Pathogenicity; Phylogenetic analysis; Resistance breaking isolate; Rsv4; Selection pressure; Soybean mosaic virus

Indexed keywords

POLYPROTEIN;

ARTICLE; CONTROLLED STUDY; GENE MUTATION; GENE SEQUENCE; GENETIC RECOMBINATION; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; SOYBEAN; VIRAL GENETICS; VIRUS IDENTIFICATION;

GENOME, VIRAL; IMMUNITY, INNATE; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PLANT PROTEINS; POTYVIRUS; SOYBEANS;

GLYCINE MAX; SOYBEAN MOSAIC VIRUS;

EID: 55749109180     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2008.08.010     Document Type: Article

References (48)

1. Arif M., and Hassan S. Evaluation of resistance in soybean germplasm to Soybean mosaic potyvirus under field conditions. J. Biol. Sci. 2 (2002) 601-604
2. Babu M., Gagarinova A.G., Brandle J.E., and Wang A. Association of the transcriptional response of soybean plants with Soybean mosaic virus systemic infection. J. Gen. Virol. 89 (2008) 1069-1080
3. Bull J.J., Meyers L.A., and Lachmann M. Quasispecies made simple. PLoS Comput. Biol. 1 (2005) e61
4. Buss G.R., Ma G., Chen P., and Tolin S.A. Registration of V94-5152 soybean germplasm resistant to soybean mosaic potyvirus. Crop Sci. 37 (1997) 1987-1988
5. Buss G.R., Ma G., Kristipati S., Chen P., and Tolin S.A. A new allele at the Rsv3 locus for resistance to soybean mosaic virus. In: Kaufman H.E. (Ed). Proceedings of the World Soybean Res. Conference VI (1999), Superior Printing, Chicago 490
6. Chen P., Buss G.R., Tolin S.A., Gunduz I., and Cicek M. A valuable gene in Suweon 97 soybean for resistance to Soybean mosaic virus. Crop Sci. 42 (2002) 333-337
7. Cho E.K., and Goodman R.M. Strains of soybean mosaic virus: classification based on virulence in resistant soybean cultivars. Phytopathology 69 (1979) 467-470
8. Choi B.K., Koo J.M., Ahn H.J., Yum H.J., Choi C.W., Ryu K.H., Chen P., and Tolin S.A. Emergence of Rsv-resistance breaking Soybean mosaic virus isolates from Korean soybean cultivars. Virus Res. 112 (2005) 42-51
9. Chung B.Y., Miller W.A., Atkins J.F., and Firth A.E. An overlapping essential gene in the Potyviridae. Proc. Natl. Acad. Sci. U.S.A. 105 (2008) 5897-5902
10. Clarke D.K., Duarte E.A., Elena S.F., Moya A., Dominigo E., and Holland J. The red queen reigns in the kingdom of RNA viruses. Proc. Natl. Acad. Sci. U.S.A. 91 (1994) 4821-4824
11. Dougherty W.G., and Carrington J.C. Expression and function of potyviral gene products. Ann. Rev. Phytopathol. 26 (1988) 123-143
12. Drake J.W., Charlesworth B., Charlesworth D., and Crow J.F. Rates of spontaneous mutation. Genetics 148 (1998) 1667-1686
13. Drake J.W., and Holland J.J. Mutation rates among RNA viruses. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 13910-13913
14. d'Urso F., Ayllon M.A., Rubio L., Sambade A., de Mendoza A.H., Guerri J., Moreno P., and Moreno P. Contribution of uneven distribution of genomic RNA variants of Citrus tristeza virus (CTV) within the plant to changes in the viral population following aphid transmission. Plant Pathol. 49 (2000) 288-294
15. Felsenstein J. PHYLIP-Phylogeny Inference Package (Version 3.2). Cladistics 5 (1989) 164-166
16. García-Arenal F., Fraile A., and Malpica J.M. Variability and genetic structure of plant virus populations. Ann. Rev. Phytopathol. 39 (2001) 157-186
17. García-Arenal F., Fraile A., and Malpica J.M. Variation and evolution of plant virus populations. Int. Microbiol. 6 (2003) 225-232
18. García-Arenal F., Palukaits P., and Zaitlin M. Strains and mutants of Tobacco mosaic virus are both found in virus derived from single-lesion-passaged inoculum. Virology 132 (1984) 131-137
19. Gunduz I., Buss G.R., Chen P., and Tolin S.A. Characterization of SMV resistance genes in Tousan 140 and Hourei soybean. Crop Sci. 42 (2002) 90-95
20. Gunduz I., Buss G.R., Chen P., and Tolin S.A. Genetic and phenotypic analysis of Soybean mosaic virus resistance in PI 88788 soybean. Phytopathology 94 (2004) 687-692
21. Hajimorad M.R., Eggenberger A.L., and Hill J.H. Evolution of Soybean mosaic virus-G7 molecularly cloned genome in Rsv1 genotype soybean results in emergence of a mutant capable of evading Rsv1-mediated recognition. Virology 314 (2003) 497-509
22. Hajimorad M.R., Eggenberger A.L., and Hill J.H. Loss and gain of elicitor function of Soybean mosaic virus G7 provoking Rsv1-mediated lethal systemic hypersensitive response maps to P3. J. Virol. 79 (2005) 1215-1222
23. Hajimorad M.R., Eggenberger A.L., and Hill J.H. Strain-specific P3 of Soybean mosaic virus elicits Rsv1-mediated extreme resistance, but absence of P3 elicitor function alone is insufficient for virulence on Rsv1 genotype soybean. Virology 345 (2006) 156-166
24. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
25. Harrison B.D. Virus variation in relation to resistance-breaking in plants. Euphytica 124 (2002) 181-192
26. Hayes A.J., Ma G., Buss G.R., and Saghai Maroof M.A. Molecular marker mapping of Rsv4, a gene conferring resistance to all known strains of Soybean mosaic virus. Crop Sci. 40 (2000) 1434-1437
27. Hébrard E., Pinel-Galzi A., Bersoult A., Siré C., and Fargette D. Emergence of a resistance-breaking isolate of Rice yellow mottle virus during serial inoculations is due to a single substitution in the genome-linked viral protein VPg. J. Gen. Virol. 87 (2006) 1369-1373
28. Hjulsager C.K., Lund O.S., and Johansen I.E. A new pathotype of Pea seedborne mosaic virus explained by properties of the P3-6k1- and viral genome-linked protein (VPg)-coding regions. Mol. Plant-Microbe Interact. 15 (2002) 169-171
29. Jayaram C., Hill J.H., and Miller W.A. Complete nucleotide sequences of two soybean mosaic virus strains differentiated by response of soybean containing the Rsv resistance gene. J. Gen. Virol. 73 (1992) 2067-2077
30. Kamenova I., Lohuis D., and Peters D. Loss of aphid transmissibility of Plum pox virus isolates. Biotechnol. Equip. 16 (2002) 48-54
31. Kiihl R.A.S., and Hartwig E.E. Inheritance of reaction to Soybean mosaic virus in soybeans. Crop Sci. 19 (1979) 372-375
32. Liao L., Chen P., Buss G.R., Yang Q., and Tolin S.A. Inheritance and allelism of resistance to Soybean mosaic virus in Zao18 soybean from China. J. Hered. 93 (2002) 447-452
33. Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., and Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73 (1999) 152-160
34. Malpica J.M., Fraile A., Moreno I., Obies C.I., Drake J.W., and García-Arenal F. The rate and character of spontaneous mutation in an RNA virus. Genetics 162 (2002) 1505-1511
35. Mlotshwa S., Verver J., Sithole-Niang I., Van Kampen T., Van Kammen A., and Wellink J. The genomic sequence of cowpea aphid-borne mosaic virus and its similarities with other potyviruses. Arch. Virol. 147 (2002) 1043-1052
36. Moury B., Morel C., Johansen E., Guilbaud L., Souche S., Ayme V., Caranta C., Palloix A., and Jacquemond M. Mutations in Potato virus Y genome-linked protein determine virulence toward recessive resistances in Capsicum annuum and Lycopersicon hirsutum. Mol. Plant-Microbe Interact. 17 (2004) 322-329
37. Moya A., Elena S.F., Bracho A., Miralles R., and Barrio E. The evolution of RNA viruses: a population genetics view. Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 6967-6973
38. Noueiry A.O., and Ahlquist P. Brome mosaic virus RNA replication: revealing the role of the host in RNA virus replication. Ann. Rev. Phytopathol. 41 (2003) 77-98
39. Page R.D.M. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12 (1996) 357-358
40. Redondo E., Krause-Sakate R., Yang S.-J., Lot H., Le Gall O., and Candresse T. Lettuce mosaic virus pathogenicity determinants in susceptible and tolerant lettuce cultivars map to different regions of the viral genome. Mol. Plant-Microbe Interact. 14 (2001) 804-810
41. Roossinck M.J. Mechanisms of plant virus evolution. Annu. Rev. Phytopathol. 35 (1997) 191-209
42. Ruiz-Jarabo C.M., Arias A., Baranowski E., Escarmis C., and Domingo E. Memory in viral quasispecies. J. Virol. 74 (2000) 3543-3547
43. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
44. Urcuqui-Inchima S., Haenni A.-L., and Bernardi F. Potyvirus proteins: a wealth of functions. Virus Res. 74 (2001) 157-175
45. Wang X., Eggenberger Al.L., Nutter Jr. F.W., and Hill J.H. Pathogen-derived transgenic resistance to Soybean mosaic virus in soybean. Mol. Breed. 8 (2001) 119-127
46. Yu Y.G., Saghai Maroof M.A., Buss G.R., Maughan P.J., and Tolin S.A. RFLP and microsatellite mapping of a gene for Soybean mosaic virus resistance. Phytopathology 84 (1994) 60-64
47. Zheng C., Chen P., and Gergerich R. Characterization of resistance to Soybean mosaic virus in diverse soybean germplasm. Crop Sci. 45 (2005) 2503-2509
48. Zheng C., Chen P., and Gergerich R. Effect of temperature on the expression of necrosis in soybean infected with soybean mosaic virus. Crop Sci. 45 (2005) 916-922