Expression profile of carp IFN correlate with the up-regulation of interferon regulatory factor-1 (IRF-1) in vivo and in vitro: The pivotal molecules in antiviral defense

Fish and Shellfish Immunology

Volumn 52, Issue , 2016, Pages 94-102

  Shan, Shijuan ^a   Qi, Chenchen ^a   Zhu, Yaoyao ^a   Li, Hua ^a   An, Liguo ^a   Yang, Guiwen ^a  

^a SHANDONG NORMAL UNIVERSITY   (China)

Author keywords

Gene cloning; IFN; IRF 1; PBLs; Poly(I:C)

Indexed keywords

COMPLEMENTARY DNA; FISH PROTEIN; INTERFERON REGULATORY FACTOR 1; MESSENGER RNA; POLYINOSINIC POLYCYTIDYLIC ACID; TRANSCRIPTOME;

AMINO ACID SEQUENCE; ANIMAL; CARP; CHEMISTRY; GENETICS; IMMUNOLOGY; INNATE IMMUNITY; METABOLISM; MOLECULAR CLONING; SEQUENCE ALIGNMENT; UPREGULATION; VETERINARY; VIROLOGY;

AMINO ACID SEQUENCE; ANIMALS; CARPS; CLONING, MOLECULAR; DNA, COMPLEMENTARY; FISH PROTEINS; IMMUNITY, INNATE; INTERFERON REGULATORY FACTOR-1; POLY I-C; RNA, MESSENGER; SEQUENCE ALIGNMENT; TRANSCRIPTOME; UP-REGULATION;

EID: 84962505711     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2016.03.019     Document Type: Article

References (55)

1. Taniguchi T., Ogasawara K., Takaoka A., Tanaka N. IRF family of transcription factors as regulators of host defense. Annu. Rev. Immunol. 2001, 19:623-655.
2. Tamura T., Yanai H., Savitsky D., Taniguchi T. The IRF family transcription factors in immunity and oncogenesis. Annu. Rev. Immunol. 2008, 26:535-584.
3. Nguyen H., Hiscott J., Pitha P.M. The growing family of interferon regulatory factors. Cytokine Growth Factor Rev. 1997, 8:293-312.
4. Stein C., Caccamo M., Laird G., Leptin M. Conservation and divergence of gene families encoding components of innate immune response systems in zebrafish. Genome Biol. 2007, 8:R251.
5. Suzuki Y., Yasuike M., Kondo H., Aoki T., Hirono I. Molecular cloning and expression analysis of interferon regulatory factor 10 (IRF10) in Japanese flounder, Paralichthys olivaceus. Fish Shellfish Immunol. 2011, 30:67-76.
6. Fujita T., Sakakibara J., Sudo Y., Miyamoto M., Kimura Y., Taniguchi T. Evidence for a nuclear factor(s), IRF-1, mediating induction and silencing properties to human IFN-beta gene regulatory elements. EMBO J. 1988, 7:3397-3405.
7. Fujita T., Kimura Y., Miyamoto M., Barsoumian E.L., Taniguchi T. Induction of endogenous IFN-alpha and IFN-beta genes by a regulatory transcription factor, IRF-1. Nature 1989, 337:270-272.
8. Sharf R., Meraro D., Azriel A., Thornton A.M., Ozato K., Petricoin E.F., Larner A.C., Schaper F., Hauser H., Levi B.Z. Phosphorylation events modulate the ability of interferon consensus sequence binding protein to interact with interferon regulatory factors and to bind DNA. J. Biol. Chem. 1997, 272:9785-9792.
9. Gurtler C., Bowie A.G. Innate immune detection of microbial nucleic acids. Trends Microbiol. 2013, 21:413-420.
10. Honda K., Yanai H., Negishi H., Asagiri M., Sato M., Mizutani T., Shimada N., Ohba Y., Takaoka A., Yoshida N., Taniguchi T. IRF-7 is the master regulator of type-I interferon-dependent immune responses. Nature 2005, 434:772-777.
11. Negishi H., Fujita Y., Yanai H., Sakaguchi S., Ouyang X., Shinohara M., Takayanagi H., Ohba Y., Taniguchi T., Honda K. Evidence for licensing of IFN-gamma-induced IFN regulatory factor 1 transcription factor by MyD88 in Toll-like receptor-dependent gene induction program. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:15136-15141.
12. Yarilina A., Park-Min K.H., Antoniv T., Hu X., Ivashkiv L.B. TNF activates an IRF1-dependent autocrine loop leading to sustained expression of chemokines and STAT1-dependent type I interferon-response genes. Nat. Immunol. 2008, 9:378-387.
13. Venkatesh D., Ernandez T., Rosetti F., Batal I., Cullere X., Luscinskas F.W., Zhang Y., Stavrakis G., Garcia-Cardena G., Horwitz B.H., Mayadas T.N. Endothelial TNF receptor 2 induces IRF1 transcription factor-dependent interferon-beta autocrine signaling to promote monocyte recruitment. Immunity 2013, 38:1025-1037.
14. Giannouli S., Tzoanopoulos D., Ritis K., Kartalis G., Moutsopoulos H.M., Voulgarelis M. Autoimmune manifestations in human myelodysplasia: a positive correlation with interferon regulatory factor-1 (IRF-1) expression. Ann. Rheum. Dis. 2004, 63:578-582.
15. Reilly C.M., Olgun S., Goodwin D., Gogal R.M., Santo A., Romesburg J.W., Ahmed S.A., Gilkeson G.S. Interferon regulatory factor-1 gene deletion decreases glomerulonephritis in MRL/lpr mice. Eur. J. Immunol. 2006, 36:1296-1308.
16. Richez C., Barnetche T., Miceli-Richard C., Blanco P., Moreau J.F., Rifkin I., Schaeverbeke T. Role for interferon regulatory factors in autoimmunity. Jt. Bone Spine 2010, 77:525-531.
17. Dou L., Liang H.F., Geller D.A., Chen Y.F., Chen X.P. The regulation role of interferon regulatory factor-1 gene and clinical relevance. Hum. Immunol. 2014, 75:1110-1114.
18. Harada H., Kitagawa M., Tanaka N., Yamamoto H., Harada K., Ishihara M., Taniguchi T. Anti-oncogenic and oncogenic potentials of interferon regulatory factors-1 and -2. Science 1993, 259:971-974.
19. Kimura T., Nakayama K., Penninger J., Kitagawa M., Harada H., Matsuyama T., Tanaka N., Kamijo R., Vilcek J., Mak T.W., et al. Involvement of the IRF-1 transcription factor in antiviral responses to interferons. Science 1994, 264:1921-1924.
20. Tamura T., Ishihara M., Lamphier M.S., Tanaka N., Oishi I., Aizawa S., Matsuyama T., Mak T.W., Taki S., Taniguchi T. An IRF-1-dependent pathway of DNA damage-induced apoptosis in mitogen-activated T lymphocytes. Nature 1995, 376:596-599.
21. Taniguchi T., Harada H., Lamphier M. Regulation of the interferon system and cell growth by the IRF transcription factors. J. Cancer Res. Clin. Oncol. 1995, 121:516-520.
22. Yabu T., Hirose H., Hirono I., Katagiri T., Aoki T., Yamamoto E. Molecular cloning of a novel interferon regulatory factor in Japanese flounder, Paralichthys olivaceus. Mol. Mar. Biol. Biotechnol. 1998, 7:138-144.
23. Richardson M.P., Tay B.H., Goh B.Y., Venkatesh B., Brenner S. Molecular cloning and genomic structure of a gene encoding interferon regulatory factor in the pufferfish (Fugu rubripes). Mar. Biotechnol. 2001, 3:145-151.
24. Collet B., Hovens G.C., Mazzoni D., Hirono I., Aoki T., Secombes C.J. Cloning and expression analysis of rainbow trout Oncorhynchus mykiss interferon regulatory factor 1 and 2 (IRF-1 and IRF-2). Dev. Comp. Immunol. 2003, 27:111-126.
25. Song H.D., Sun X.J., Deng M., Zhang G.W., Zhou Y., Wu X.Y., Sheng Y., Chen Y., Ruan Z., Jiang C.L., Fan H.Y., Zon L.I., Kanki J.P., Liu T.X., Look A.T., Chen Z. Hematopoietic gene expression profile in zebrafish kidney marrow. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:16240-16245.
26. Ordas M.C., Abollo E., Costa M.M., Figueras A., Novoa B. Molecular cloning and expression analysis of interferon regulatory factor-1 (IRF-1) of turbot and sea bream. Mol. Immunol. 2006, 43:882-890.
27. Sun B.J., Chang M.X., Song Y., Yao W.J., Nie P. Gene structure and transcription of IRF-1 and IRF-7 in the mandarin fish Siniperca chuatsi. Vet. Immunol. Immunopathol. 2007, 116:26-36.
28. Jia W., Guo Q. Gene structures and promoter characteristics of interferon regulatory factor 1 (IRF-1), IRF-2 and IRF-7 from snakehead Channa argus. Mol. Immunol. 2008, 45:2419-2428.
29. Shi Y., Zhang Y.-B., Zhao Z., Jiang J., Zhang Q.-Y., Gui J.-F. Molecular characterization and subcellular localization of Carassius auratus interferon regulatory factor-1. Dev. Comp. Immunol. 2008, 32:134-146.
30. Bergan V., Kileng O., Sun B., Robertsen B. Regulation and function of interferon regulatory factors of Atlantic salmon. Mol. Immunol. 2010, 47:2005-2014.
31. Shi Y., Zhu X.P., Yin J.K., Zhang Q.Y., Gui J.F. Identification and characterization of interferon regulatory factor-1 from orange-spotted grouper (Epinephelus coioides). Mol. Biol. Rep. 2010, 37:1483-1493.
32. Yao C.L., Kong P., Huang X.N., Wang Z.Y. Molecular cloning and expression of IRF1 in large yellow croaker, Pseudosciaena crocea. Fish. Shellfish Immunol. 2010, 28:654-660.
33. Xiaoni G., Zhuo C., Xuzhen W., Dengqiang W., Xinwen C. Molecular cloning and characterization of interferon regulatory factor 1 (IRF-1), IRF-2 and IRF-5 in the chondrostean paddlefish Polyodon spathula and their phylogenetic importance in the Osteichthyes. Dev. Comp. Immunol. 2012, 36:74-84.
34. Lai Q., Lin G., Ma M., Huang S., Li W., Li D., Gu M., Mao H., Hu C. IRF-1 acts as a positive regulator in the transcription of grass carp (Ctenopharyngodon idella) IFN gene. Fish Shellfish Immunol. 2013, 34:1432-1438.
35. Lu Y., Wang Q., Liu Y., Shao C., Chen S., Sha Z. Gene cloning and expression analysis of IRF1 in half-smooth tongue sole (Cynoglossus semilaevis). Mol. Biol. Rep. 2014, 41:4093-4101.
36. Arockiaraj J., Sathyamoorthi A., Kumaresan V., Palanisamy R., Chaurasia M.K., Bhatt P., Gnanam A.J., Pasupuleti M., Arasu A. A murrel interferon regulatory factor-1: molecular characterization, gene expression and cell protection activity. Mol. Biol. Rep. 2014, 41:5299-5309.
37. Caipang C.M., Hirono I., Aoki T. Induction of antiviral state in fish cells by Japanese flounder, Paralichthys olivaceus, interferon regulatory factor-1. Fish. Shellfish Immunol. 2005, 19:79-91.
38. Caipang C.M., Hirono I., Aoki T. Modulation of the early immune response against viruses by a teleostean interferon regulatory factor-1 (IRF-1). Comp. Biochem. Physiol. A Mol. Integr. Physiol. 2009, 152:440-446.
39. Feng H., Zhang Y.B., Zhang Q.M., Li Z., Zhang Q.Y., Gui J.F. Zebrafish IRF1 regulates IFN antiviral response through binding to IFNvarphi1 and IFNvarphi3 promoters downstream of MyD88 signaling. J. Immunol. 2015, 194:1225-1238.
40. Miyamoto M., Fujita T., Kimura Y., Maruyama M., Harada H., Sudo Y., Miyata T., Taniguchi T. Regulated expression of a gene encoding a nuclear factor, IRF-1, that specifically binds to IFN-beta gene regulatory elements. Cell 1988, 54:903-913.
41. Cha Y., Sims S.H., Romine M.F., Kaufmann M., Deisseroth A.B. Human interferon regulatory factor 1: intron-exon organization. DNA Cell Biol. 1992, 11:605-611.
42. Honda K., Taniguchi T. IRFs: master regulators of signalling by Toll-like receptors and cytosolic pattern-recognition receptors. Nat. Rev. Immunol. 2006, 6:644-658.
43. Paun A., Pitha P.M. The IRF family, revisited. Biochimie 2007, 89:744-753.
44. Uegaki K., Shirakawa M., Harada H., Taniguchi T., Kyogoku Y. Secondary structure and folding topology of the DNA binding domain of interferon regulatory factor 2, as revealed by NMR spectroscopy. FEBS Lett. 1995, 359:184-188.
45. Lai Q., Lin G., Ma M., Huang S., Li W., Li D., Gu M., Mao H., Hu C. IRF-1 acts as a positive regulator in the transcription of grass carp (Ctenopharyngodon idella) IFN gene. Fish Shellfish Immunol. 2013, 34:1432-1438.
46. Shi Y., Zhang Y.B., Zhao Z., Jiang J., Zhang Q.Y., Gui J.F. Molecular characterization and subcellular localization of Carassius auratus interferon regulatory factor-1. Dev. Comp. Immunol. 2008, 32:134-146.
47. Fujita T., Reis L.F., Watanabe N., Kimura Y., Taniguchi T., Vilcek J. Induction of the transcription factor IRF-1 and interferon-beta mRNAs by cytokines and activators of second-messenger pathways. Proc. Natl. Acad. Sci. U. S. A. 1989, 86:9936-9940.
48. Rombout J.H., van der Tuin S.J., Yang G., Schopman N., Mroczek A., Hermsen T., Taverne-Thiele J.J. Expression of the polymeric immunoglobulin receptor (pIgR) in mucosal tissues of common carp (Cyprinus carpio L.). Fish Shellfish Immunol. 2008, 24:620-628.
49. Darnell J.E., Kerr I.M., Stark G.R. Jak-STAT pathways and transcriptional activation in response to IFNs and other extracellular signaling proteins. Science 1994, 264:1415-1421.
50. Robertsen B. Expression of interferon and interferon-induced genes in salmonids in response to virus infection, interferon-inducing compounds and vaccination. Fish Shellfish Immunol. 2008, 25:351-357.
51. Harada H., Fujita T., Miyamoto M., Kimura Y., Maruyama M., Furia A., Miyata T., Taniguchi T. Structurally similar but functionally distinct factors, IRF-1 and IRF-2, bind to the same regulatory elements of IFN and IFN-inducible genes. Cell 1989, 58:729-739.
52. Honda K., Takaoka A., Taniguchi T. Type I interferon [corrected] gene induction by the interferon regulatory factor family of transcription factors. Immunity 2006, 25:349-360.
53. Neumann N.F., Stafford J.L., Barreda D., Ainsworth A.J., Belosevic M. Antimicrobial mechanisms of fish phagocytes and their role in host defense. Dev. Comp. Immunol. 2001, 25:807-825.
54. Li J., Barreda D.R., Zhang Y.A., Boshra H., Gelman A.E., Lapatra S., Tort L., Sunyer J.O. B lymphocytes from early vertebrates have potent phagocytic and microbicidal abilities. Nat. Immunol. 2006, 7:1116-1124.
55. Long S., Milev-Milovanovic I., Wilson M., Bengten E., Clem L.W., Miller N.W., Chinchar V.G. Identification and expression analysis of cDNAs encoding channel catfish type I interferons. Fish Shellfish Immunol. 2006, 21:42-59.