A murrel interferon regulatory factor-1: Molecular characterization, gene expression and cell protection activity

Molecular Biology Reports

Volumn 41, Issue 8, 2014, Pages 5299-5309

  Arockiaraj, Jesu ^a   Sathyamoorthi, Akila ^a,b   Kumaresan, Venkatesh ^a   Palanisamy, Rajesh ^a   Chaurasia, Mukesh Kumar ^a   Bhatt, Prasanth ^a   Gnanam, Annie J ^c   Pasupuleti, Mukesh ^d   Arasu, Abirami ^a,b  

^a SRM INSTITUTE OF SCIENCE AND TECHNOLOGY   (India)

^b SRM Arts and Science College Chennai   (India)

^c UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^d CENTRAL DRUG RESEARCH INSTITUTE   (India)

Author keywords

Cell protection activity; Gene expression; Interferon regulatory factor; Molecular characterization; Murrel

Indexed keywords

BETA ACTIN; COMPLEMENTARY DNA; INTERFERON CONSENSUS SEQUENCE BINDING PROTEIN; INTERFERON REGULATORY FACTOR; INTERFERON REGULATORY FACTOR 1; INTERFERON REGULATORY FACTOR 10; INTERFERON REGULATORY FACTOR 2; INTERFERON REGULATORY FACTOR 3; INTERFERON REGULATORY FACTOR 4; INTERFERON REGULATORY FACTOR 5; INTERFERON REGULATORY FACTOR 6; INTERFERON REGULATORY FACTOR 7; INTERFERON REGULATORY FACTOR 9; POLYINOSINIC POLYCYTIDYLIC ACID; RNA; TRYPTOPHAN; UNCLASSIFIED DRUG; VIRUS RNA; FISH PROTEIN; MESSENGER RNA;

AEROMONAS HYDROPHILA; ALPHA HELIX; ANIMAL CELL; ANIMAL TISSUE; APHANOMYCES; APHANOMYCES INVADANS; ARTICLE; BACTERIUM; BETA SHEET; CELL PROTECTION; CHANNA STRIATUS; CONTROLLED STUDY; DINUCLEOTIDE REPEAT; DNA BINDING; DNA LIBRARY; EPIZOOTIC ULCERATIVE SYNDROME; FUNGUS; GENE CLUSTER; GENE EXPRESSION; GENETIC ANALYSIS; IMMUNOREGULATION; INFECTION; INTERNAL SEQUENCING; MOLECULAR GENETICS; NONHUMAN; NUCLEAR LOCALIZATION SIGNAL; NUCLEOTIDE SEQUENCE; PHYLOGENY; PREDICTION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; RNA STRUCTURE; SPLEEN; TRANSACTIVATION; ANIMAL; BIOLOGY; CYTOLOGY; DNA SEQUENCE; FISH; GENE LIBRARY; GENE VECTOR; GENETICS; IMMUNOLOGY; METABOLISM; MOLECULAR CLONING; NOVIRHABDOVIRUS; PLASMID; VACCINATION; VIROLOGY;

AEROMONAS HYDROPHILA; ANIMALS; APHANOMYCES; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; FISH PROTEINS; FISHES; GENE EXPRESSION; GENE LIBRARY; GENETIC VECTORS; INTERFERON REGULATORY FACTOR-1; NOVIRHABDOVIRUS; PLASMIDS; POLY I-C; PROTEIN STRUCTURE, TERTIARY; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SPLEEN; VACCINATION;

EID: 84905081793     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-014-3401-5     Document Type: Article

References (67)

1. Tamura T, Yanai H, Savitsky D, Taniguchi T (2008) The IRF family transcription factors in immunity and oncogenesis. Annu Rev Immunol 26:535-584 (Pubitemid 351600385)
2. Honda K, Takaoka A, Taniguchi T (2006) Type I interferon gene induction by the interferon regulator factor family of transcription factors. Immunity 25:349-360 (Pubitemid 44354220)
3. Brüstle A, Heink S, Huber M, Rosenplänter C, Stadelmann C et al (2007) The development of inflammatory TH-17 cells requires interferon-regulatory factor 4. Nat Immunol 8:958-966 (Pubitemid 47300010)
4. Nguyen H, Hiscott J, Pitha PM (1997) The growing family of interferon regulatory factors. Cytokine Growth Factor Rev 8:212-293
5. Eroshkin A, Mushegian A (1999) Conserved transactivation domain shared by interferon regulatory factors and smad morphogens. J Mol Med 77:403-405 (Pubitemid 29302703)
6. Ozato K, Tailor P, Kubota T (2007) The interferon regulatory factor family in host defense: mechanism of action. J Biol Chem 282:20065-20069 (Pubitemid 47099978)
7. Holland JW, Karim A, Wang T, Alnabulsi A, Scott J et al (2010) Molecular cloning and characterization of interferon regulatory factors 4 and 8 (IRF-4 and IRF-8) in rainbow trout, Oncorhynchus mykiss. Fish Shellfish Immunol 29:157-166
8. Sato M, Taniguchi T, Tanaka N (2001) The interferon system and interferon regulatory factor transcription factors-studies from gene knockout mice. Cytokine Growth Factor Rev 12:133-142 (Pubitemid 32588141)
9. Collet B, Secombes CJ (2002) Type I-interferon signalling in fish. Fish Shellfish Immunol 12:389-397 (Pubitemid 34805303)
10. Barnes BJ, Field AE, Pitha-Rowe PM (2003) Virus-induced heterodimer formation between IRF-5 and IRF-7 modulates assembly of the IFNA enhanceosome in vivo and transcriptional activity of IFNA genes. J Biol Chem 278:16630-16641 (Pubitemid 36799526)
11. Honda K, Taniguchi T (2006) IRFs: master regulators of signaling by Toll-like receptors and cytosolic pattern-recognition receptors. Nat Rev Immunol 6:644-658 (Pubitemid 44298214)
12. Paun A, Pitha PM (2007) The IRF family revisited. Biochimie 89:744-753
13. Blanton SH, Cortez A, Stal S, Mulliken JB, Finnell RH et al (2005) Variation in IRF6 contributes to nonsyndromic cleft lip and palate. Am J Med Genet Part A 137A:259-262 (Pubitemid 41262657)
14. Horvath CM, Stark GR, Kerr IM, Darnell JE (1996) Interactions between STAT and non-STAT proteins in the interferon-stimulated gene factor 3 transcription complex. Mol Cell Biol 16:6957-6964 (Pubitemid 26389755)
15. Martinez-Moczygemba M, Gutch MJ, French DL, Reich NC (1997) Distinct STAT structure promotes interaction of STAT2 with the p48 subunit of the interferon-alpha-stimulated transcription factor ISGF3. J Biol Chem 272:20070-20076 (Pubitemid 27340112)
16. Nehyba J, Hrdlicková R, Burnside J, Bose HR Jr (2002) A novel interferon regulatory factor (IRF), IRF-10, has a unique role in immune defense and is induced by the v-Rel oncoprotein. Mol Cell Biol 22:3942-3957 (Pubitemid 34525232)
17. Miyamoto M, Fujita T, Kimura Y, Maruyama M, Harada H et al (1988) Regulated expression of a gene encoding a nuclear factor, IRF-1, that specifically binds to IFN-beta gene regulatory elements. Cell 54:903-913
18. Escalante CR, Yie J, Thanos D, Agarwal AK (1998) Structure of IRF1 with bound DNA reveals determinants of interferon regulation. Nature 391:103-106 (Pubitemid 28079225)
19. Tanaka N, Ishihara M, Lamphier MS, Nozawa H, Matsuyama T et al (1996) Cooperation of the tumor suppressors IRF-1 and p53 in response to DNA damage. Nature 382:816-818 (Pubitemid 26299566)
20. Ohteki T, Yoshida H, Matsuyama T, Duncan GS, Mak TW et al (1998) The transcription factor interferon regulatory factor 1 (IRF-1) is important during the maturation of natural killer 1.1ρT cell receptor-a/bρ (NK1ρ T) cells, natural killer cells, and intestinal intraepithelial T cells. J Exp Med 187:967-972 (Pubitemid 28141670)
21. Kirchhoff S, Schaper F, Hauser H (1993) Interferon regulatory factor (IRF-1) mediates cell growth inhibition by transactivation of downstream target genes. Nucl Acid Res 21:2881-2889 (Pubitemid 23220440)
22. Kirchhoff S, Hauser H (1998) Cooperative activity between HER oncogenes and the tumor suppressor IRF-1 results in apoptosis. Oncogene 18:3725-3736 (Pubitemid 29338505)
23. Nozawa H, Oda E, Nakao K, Ishihara M, Ueda S et al (1999) Loss of transcription factor IRF-1 affects tumor susceptibility in mice carrying the Ha-ras transgene or nullizygosity for p53. Genes Dev 13:1240-1245 (Pubitemid 29250191)
24. Kano A, Haruyama T, Akaike T, Watanabe Y (1999) IRF-1 is an essential mediator in IFN-gamma-induced cell cycle arrest and apoptosis of primary cultured hepatocytes. Biochem Biophys Res Comm 257:672-677 (Pubitemid 29301501)
25. Pine R (1992) Constitutive expression of an ISGF2/IRF1 transgene leads to interferon-independent activation of interferoninducible genes and resistance to virus infection. J Virol 66:4470-4478
26. Tanaka N, Ishihara M, Kitagawa M, Harada H, Kimura T et al (1994) Cellular commitment to oncogene-induced transformation or apoptosis is dependent on the transcription factor IRF-1. Cell 77:829-839 (Pubitemid 24187681)
27. Dornan D, Eckert M, Wallace M, Shimizu H, Ramsay E et al (2004) Interferon regulatory factor 1 binding to p300 stimulates DNA-dependent acetylation of p53. Mol Cell Biol 24:10083-10098 (Pubitemid 39458831)
28. Pizzoferrato E, Liu Y, Gambotto A, Armstrong MJ, Stang MT et al (2004) Ectopic expression of interferon regulatory factor-1 promotes human breast cancer cell death and results in reduced expression of survivin. Cancer Res 64:8381-8388 (Pubitemid 39491777)
29. Bouker KB, Skaar TC, Riggins RB, Harburger DS, Fernandez DR et al (2005) Interferon regulatory factor-1 (IRF-1) exhibits tumor suppressor activities in breast cancer associated with caspase activation and induction of apoptosis. Carcinogenesis 26:1527-1535 (Pubitemid 41244519)
30. McBeath AJA, Snow M, Secombes CJ, Ellis AE, Collet B (2007) Expression kinetics of interferon and interferon-induced genes in Atlantic salmon (Salmo salar) following infection with infectious pancreatic necrosis virus and infectious salmon anaemia virus. Fish Shellfish Immunol 22:230-241 (Pubitemid 44828533)
31. Arockiaraj J, Muruganandam M, Marimuthu K, Haniffa MA (1999) Utilization of carbohydrates as a dietary energy source by striped murrel Channa striatus (Bloch) fingerlings. Acta Zool Taiwan 10:103-111
32. Arockiaraj J, Haniffa MA, Perumalsamy PRR, Marimuthu K, Muruganandam M (2003) An effective treatment to the spotted murrel Channa punctatus for epizootic ulcerative syndrome (EUS). Fish Chimes 23:27-28
33. Marimuthu K, Haniffa MA, Arockiaraj J, Muruganandam M (2001) Spawning and parental behavior in the induced bred murrels. Indian J Fish 48:409-411
34. Marimuthu K, Haniffa MA, Muruganandam M, Arockiaraj J (2001) Low cost murrel seed production technique for fish farmers. Naga 24:21-22
35. Haniffa MA, Arockiaraj J, Sridhar S (1999) Weaning diet for striped murrel. Channa striatus Fish Technol 36:116-119
36. Marimuthu K, Arokiaraj J, Haniffa MA (2009) Effect of diet quality on seed production of the spotted snakehead Channa punctatus (Bloch). Am-Eurasian J Sustain Agricult 3:344-347
37. Kasornchandra J, Engelking HM, Lannan CN, Rohovec JS, Fryer JL (1992) Characteristics of three rhabdoviruses from snakehead fish Ophicephalus striatus. Dis Aqua Org 13:89-94
38. Dhanaraj M, Haniffa MA, Ramakrishnan CM, Arunsingh SV (2008) Microbial flora from the Epizootic Ulcerative Syndrome (EUS) infected murrel Channa striatus (Bloch, 1797) in Tirunelveli region. Turk J Vet Anim Sci 32:221-224 (Pubitemid 351769709)
39. Arockiaraj J, Annie JG, Dhanaraj M, Mukesh P, Milton J et al (2013) An upstream initiator caspase 10 of snakehead murrel Channa striatus, containing DED, p20 and p10 subunits: molecular cloning, gene expression and proteolytic activity. Fish Shellfish Immunol 34:505-513
40. Abirami A, Venkatesh K, Akila S, Rajesh P, Prabha N et al (2013) Fish lily type lectin-1 contains β-prism 2 architecture: immunological characterization. Mol Immunol 56:497-506
41. Patterton HG, Graves S (2000) DNAssist: the integrated editing and analysis of molecular biology sequences in windows. Bioinform Appl Note 16:652-653
42. Uinuk-Ool TS, Takezaki N, Kuroda N, Figueroa F, Sato et al (2003) Phylogeny of antigen-processing enzymes: cathepsins of a cephalochordate, an agnathan and a bony fish. Scand J Immunol 58:436-448 (Pubitemid 37215058)
43. Zhang Y (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinform 9:40
44. Caster GR, Cole JR (1990) Diagnostic procedures in veterinary bacteriology and mycology, 5th edn. Academic Press Inc, San Diego
45. Arockiaraj J, Puganeshwaran V, Sarasvathi E, Arun S, Tahereh A et al (2011) Gene profiling and characterization of arginine kinase-1 (MrAK-1) from freshwater giant prawn (Macrobrachium rosenbergii). Fish Shellfish Immunol 31:81-89
46. Arockiaraj J, Puganeshwaran V, Sarasvathi E, Arun S, Rofina YO et al (2012) Molecular cloning, characterization and gene expression of an antioxidant enzyme catalase (Mr Cat) from Macrobrachium rosenbergii. Fish Shellfish Immunol 32:670-682
47. Arockiaraj J, Puganeshwaran V, Sarasvathi E, Arun S, Rofina YO et al (2011) Effect of infectious hypodermal and hematopoietic necrosis virus (IHHNV) infection on caspase 3c expression and activity in freshwater prawn Macrobrachium rosenbergii. Fish Shellfish Immunol 32:161-169
48. Arockiaraj J, Puganeshwaran V, Sarasvathi E, Arun S, Rofina YO et al (2012) Prophenoloxidase activating enzyme-III fromgiant freshwater prawn Macrobrachium rosenbergii: characterization, expression and specific enzyme activity. Mol Biol Rep 39:1377-1386
49. Livak KJ, Schmittgenm TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods 25:402-408 (Pubitemid 34164012)
50. Bhatt P, Venkatesh K, Rajesh P, Mukesh KC, Annie JG et al (2013) Immunological role of C4 CC chemokine-1 from snakehead murrel Channa striatus. Mol Immunol 57:292-301
51. Caipang CM, Hirono I, Aoki T (2005) Induction of antiviral state in fish cells by Japanese flounder, Paralichthys olivaceus, interferon regulatory factor-1. Fish Shellfish Immunol 19:79-91 (Pubitemid 40253001)
52. Nam BH, Yamamoto E, Hirono I, Aoki T (2000) A survey of expressed genes in the leukocytes of Japanese flounder, Paralichthys olivaceus, infected with Hirame rhabdovirus. Dev Comp Immunol 24:13-24 (Pubitemid 30109469)
53. Caipang CMA, Hirono I, Aoki T (2009) Modulation of the early immune response against viruses by a teleostean interferon regulatory factor-1 (IRF-1). Comp Biochem Physiol Part A 152:440-446
54. Renault T, Torchy C, De Kinkelin P (1991) Spectrophotometric method for titration of trout interferon, and its application to rainbow trout fry experimentally infected with viral hemaorrhagic septicemia virus. Dis Aquat Org 10:23-29
55. Collet B, Hovensa GCJ, Mazzoni D, Hirono I, Aoki T et al (2003) Cloning and expression analysis of rainbow trout Oncorhynchus mykiss interferon regulatory factor 1 and 2 (IRF-1 and IRF-2). Dev Comp Immunol 27:111-126 (Pubitemid 36110470)
56. Ordas MC, Abollo E, Costa MM, Figueras A, Novoa B (2006) Molecular cloning and expression analysis of interferon regulatory factor-1 (IRF-1) of turbot and sea bream. Mol Immunol 43:882-890 (Pubitemid 41814406)
57. Shi Y, Zhang YB, Zhao Z, Jiang J, Zhang QY et al (2008) Molecular characterization and subcellular localization of Carassius auratus interferon regulatory factor-1. Dev Comp Immunol 32:134-146 (Pubitemid 350167471)
58. Yao CY, Kong P, Huang XN, Wang ZY (2010) Molecular cloning and expression of IRF1 in large yellow croaker, Pseudosciaena crocea. Fish Shellfish Immunol 28:654-660
59. Xiaoni G, Zhuo C, Xuzhen W, Dengqiang W, Xinwen C (2012) Molecular cloning and characterization of interferon regulatory factor 1 (IRF-1), IRF-2 and IRF-5 in the chondrostean paddlefish Polyodon spathula and their phylogenetic importance in the Osteichthyes. Dev Comp Immunol 36:74-84
60. Kummerfeld SK, Teichmann SA (2006) DBD: a transcription factor prediction database. Nucl Acids Res 34:D74-D81
61. Moscou MJ, Bogdanove AJ (2009) A simple cipher governs DNA recognition by TAL effectors. Science 326:1501
62. Kalderon D, Roberts BL, Richardson WD, Smith AE (1984) A short amino acid sequence able to specify nuclear location. Cell 39:499-509 (Pubitemid 15198589)
63. Boch J, Scholze H, Schornack S, Landgraf A, Hahn S et al (2009) Breaking the code of DNA binding specificity of TAL-type III effectors. Science 326:1509-1512
64. Miller JC, Tan S, Qiao G, Barlow KA, Wang J et al (2010) A TALE nuclease architecture for efficient genome editing. Nat Biotechnol 29:143
65. Au WC, Moore PA, Lowther W, Juang YT, Pitha PM (1995) Identification of a member of the interferon regulatory factor family that binds to the interferon stimulated response element and activates expression of interferon-induced genes. Proc Natl Acad Sci USA 92:11657-11661 (Pubitemid 26014172)
66. Hu G, Xia J, Lou H, Liu Q, Lin J et al (2011) Cloning and expression analysis of interferon regulatory factor 7 (IRF-7) in turbot, Scophthalmus maximus. Dev Comp Immunol 35:416-420
67. Collet B, Boudinot P, Benmansour A, Secombes CJ (2004) A Mx-1 promoter reporter system to study interferon pathways in rainbow trout. Dev Comp Immunol 28:793-801 (Pubitemid 38388248)