Gene cloning and expression analysis of IRF1 in half-smooth tongue sole (Cynoglossus semilaevis)

Molecular Biology Reports

Volumn 41, Issue 6, 2014, Pages 4093-4101

  Lu, Yang ^a,b   Wang, Qilong ^a   Liu, Yang ^c   Shao, Changwei ^a   Chen, Songlin ^a   Sha, Zhenxia ^a  

^a YELLOW SEA FISHERIES RESEARCH INSTITUTE   (China)

^b SHANGHAI OCEAN UNIVERSITY   (China)

^c DALIAN OCEAN UNIVERSITY   (China)

Author keywords

Cynoglossus semilaevis; Expression; IRF1; Lymphocystis disease virus (LCDV); Vibrio anguillarum

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; INTERFERON REGULATORY FACTOR 1; POLYADENYLIC ACID;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; AMPHIBIA; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BIRD; CONTROLLED STUDY; CYNOGLOSSUS SEMILAEVIS; DNA DETERMINATION; DOWN REGULATION; FISH; FRESHWATER FISH; GENE EXPRESSION REGULATION; GENE FUNCTION; GENETIC CONSERVATION; INNATE IMMUNITY; IRF1 GENE; KIDNEY PARENCHYMA; LISTONELLA ANGUILLARUM; LIVER; LYMPHOCYSTIS DISEASE VIRUS; LYMPHOID TISSUE; MAMMAL; MARINE SPECIES; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SPLEEN; TELEOST; TISSUE SECTION; UPREGULATION; VIRUS STRAIN; AMINO ACID SEQUENCE; ANIMAL; BIOSYNTHESIS; FLATFISH; GENETICS; METABOLISM; VIBRIOSIS; VIROLOGY;

AMPHIBIA; AVES; CYNOGLOSSIDAE; CYNOGLOSSUS SEMILAEVIS; LISTONELLA ANGUILLARUM; LYMPHOCYSTIS DISEASE VIRUS 1; MAMMALIA; PISCES; TELEOSTEI;

AMINO ACID SEQUENCE; ANIMALS; CLONING, MOLECULAR; FISHES; FLATFISHES; GENE EXPRESSION REGULATION, DEVELOPMENTAL; INTERFERON REGULATORY FACTOR-1; LIVER; PHYLOGENY; SPLEEN; VIBRIO INFECTIONS;

EID: 84902383295     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-014-3279-2     Document Type: Article

References (39)

1. Fujita T, Sakakibara J, Sudo Y, Miyamoto M, Kimura Y, Taniguchi T (1988) Evidence for a nuclear factor(s), IRF-1, mediating induction and silencing properties to human IFN-beta gene regulatory elements. EMBO J 7(11):3397-3405
2. Mamane Y, Heylbroeck C, Genin P, Algarte M, Servant MJ, LePage C, DeLuca C, Kwon H, Lin R, Hiscott J (1999) Interferon regulatory factors: the next generation. Gene 237(1):1-14 (Pubitemid 29406192)
3. Chen W, Royer WE Jr (2010) Structural insights into interferon regulatory factor activation. Cell Signal 22(6):883-887. doi:10.1016/j.cellsig.2009.12.005
4. Savitsky D, Tamura T, Yanai H, Taniguchi T (2010) Regulation of immunity and oncogenesis by the IRF transcription factor family. Cancer Immunol Immunother CII 59(4):489-510. doi:10.1007/s00262-009-0804-6
5. Taniguchi T, Ogasawara K, Takaoka A, Tanaka N (2001) IRF family of transcription factors as regulators of host defense. Annu Rev Immunol 19:623-655. doi:10.1146/annurev.immunol.19.1.623 (Pubitemid 32368048)
6. Tamura T, Yanai H, Savitsky D, Taniguchi T (2008) The IRF family transcription factors in immunity and oncogenesis. Annu Rev Immunol 26:535-584. doi:10.1146/annurev.immunol.26.021607.090400 (Pubitemid 351600385)
7. Miyamoto M, Fujita T, Kimura Y, Maruyama M, Harada H, Sudo Y, Miyata T, Taniguchi T (1988) Regulated expression of a gene encoding a nuclear factor, IRF-1, that specifically binds to IFN-beta gene regulatory elements. Cell 54(6):903-913
8. Harada H, Fujita T, Miyamoto M, Kimura Y, Maruyama M, Furia A, Miyata T, Taniguchi T (1989) Structurally similar but functionally distinct factors, IRF-1 and IRF-2, bind to the same regulatory elements of IFN and IFN-inducible genes. Cell 58(4):729-739 (Pubitemid 19210966)
9. Galon J, Sudarshan C, Ito S, Finbloom D, O'Shea JJ (1999) IL-12 induces IFN regulating factor-1 (IRF-1) gene expression in human NK and T cells. J Immunol 162(12):7256-7262 (Pubitemid 29277698)
10. Coccia EM, Stellacci E, Marziali G, Weiss G, Battistini A (2000) IFN-gamma and IL-4 differently regulate inducible NO synthase gene expression through IRF-1 modulation. Int Immunol 12(7):977-985 (Pubitemid 30599352)
11. Cremonesi P, Capoferri R, Pisoni G, Del Corvo M, Strozzi F, Rupp R, Caillat H, Modesto P, Moroni P, Williams JL, Castiglioni B, Stella A (2012) Response of the goat mammary gland to infection with Staphylococcus aureus revealed by gene expression profiling in milk somatic and white blood cells. BMC Genom 13(1):540. doi:10.1186/1471-2164-13-540
12. Battistini A (2009) Interferon regulatory factors in hematopoietic cell differentiation and immune regulation. J Interferon Cytokine Res 29(12):765-780. doi:10.1089/jir2009.0030
13. Matsuyama T, Kimura T, Kitagawa M, Pfeffer K, Kawakami T, Watanabe N, Kundig TM, Amakawa R, Kishihara K, Wakeham A et al (1993) Targeted disruption of IRF-1 or IRF-2 results in abnormal type I IFN gene induction and aberrant lymphocyte development. Cell 75(1):83-97 (Pubitemid 23306023)
14. Janeway CA Jr, Medzhitov R (2002) Innate immune recognition. Annu Rev Immunol 20:197-216. doi:10.1146/annurev.immunol.20.083001.084359
15. Meylan E, Curran J, Hofmann K, Moradpour D, Binder M, Bartenschlager R, Tschopp J (2005) Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus. Nature 437(7062):1167-1172. doi:10.1038/nature04193 (Pubitemid 41509355)
16. Testa U, Stellacci E, Pelosi E, Sestili P, Venditti M, Orsatti R, Fragale A, Petrucci E, Pasquini L, Belardelli F, Gabriele L, Battistini A (2004) Impaired myelopoiesis in mice devoid of interferon regulatory factor 1. Leukemia 18(11):1864-1871. doi:10.1038/sj.leu.2403472 (Pubitemid 39530017)
17. Abdollahi A, Lord KA, Hoffman-Liebermann B, Liebermann DA (1991) Interferon regulatory factor 1 is a myeloid differentiation primary response gene induced by interleukin 6 and leukemia inhibitory factor: role in growth inhibition. Cell Growth Differ 2(8):401-407
18. Coccia EM, Passini N, Battistini A, Pini C, Sinigaglia F, Rogge L (1999) Interleukin-12 induces expression of interferon regulatory factor-1 via signal transducer and activator of transcription-4 in human T helper type 1 cells. J Biol Chem 274(10):6698-6703 (Pubitemid 29111090)
19. Coccia EM, Stellacci E, Valtieri M, Masella B, Feccia T, Marziali G, Hiscott J, Testa U, Peschle C, Battistini A (2001) Ectopic expression of interferon regulatory factor-1 potentiates granulocytic differentiation. Biochem J 360(Pt 2):285-294 (Pubitemid 33151323)
20. Gabriele L, Fragale A, Borghi P, Sestili P, Stellacci E, Venditti M, Schiavoni G, Sanchez M, Belardelli F, Battistini A (2006) IRF-1 deficiency skews the differentiation of dendritic cells toward plasmacytoid and tolerogenic features. J Leukoc Biol 80(6):1500-1511. doi:10.1189/jlb.0406246 (Pubitemid 44904989)
21. Kano S, Sato K, Morishita Y, Vollstedt S, Kim S, Bishop K, Honda K, Kubo M, Taniguchi T (2008) The contribution of transcription factor IRF1 to the interferon-gamma-interleukin 12 signaling axis and TH1 versus TH-17 differentiation of CD4+ T cells. Nat Immunol 9(1):34-41. doi:10.1038/ni1538 (Pubitemid 350286201)
22. Yao CL, Kong P, Huang XN, Wang ZY (2010) Molecular cloning and expression of IRF1 in large yellow croaker, Pseudosciaena crocea . Fish Shellfish Immunol 28(4):654-660. doi:10. 1016/j.fsi.2009.12.026
23. Caipang CM, Hirono I, Aoki T (2005) Induction of antiviral state in fish cells by Japanese flounder, Paralichthys olivaceus, interferon regulatory factor-1. Fish Shellfish Immunol 19(1):79-91. doi:10.1016/j.fsi.2004.12.008 (Pubitemid 40253001)
24. Song HD, Sun XJ, Deng M, Zhang GW, Zhou Y, Wu XY, Sheng Y, Chen Y, Ruan Z, Jiang CL, Fan HY, Zon LI, Kanki JP, Liu TX, Look AT, Chen Z (2004) Hematopoietic gene expression profile in zebrafish kidney marrow. Proc Natl Acad Sci USA 101(46):16240-16245. doi:10.1073/pnas.0407241101 (Pubitemid 39552829)
25. Ordas MC, Abollo E, Costa MM, Figueras A, Novoa B (2006) Molecular cloning and expression analysis of interferon regulatory factor-1 (IRF-1) of turbot and sea bream. Mol Immunol 43(7):882-890. doi:10.1016/j.molimm.2005.06. 034 (Pubitemid 41814406)
26. Ji XS, Chen SL, Jiang YL, Xu TJ, Yang JF, Tian YS (2011) Growth differences and differential expression analysis of pituitary adenylate cyclase activating polypeptide (PACAP) and growth hormone-releasing hormone (GHRH) between the sexes in half-smooth tongue sole Cynoglossus semilaevis. Gen Comp Endocrinol 170(1):99-109. doi:10.1016/j.ygcen.2010.09.011
27. Zhang XJ, Qin GM, Bing XW, Yan BL, Liang LG (2011) Molecular and phenotypic characterization of Vibrio aestuarianus, a pathogen of the cultured tongue sole, Cynoglossus semilaevis Gunther. J Fish Dis 34(1):57-64. doi:10.1111/j.1365-2761.2010.01212.x
28. Li F, Li H, Zhang S (2011) Ikaros expression in tongue sole macrophages: a marker for lipopolysaccharide- and lipoteichoic acid-induced inflammatory responses. Mol Biol Rep 38(4):2273-2279. doi:10.1007/s11033-010-0358-x
29. Xu TJ, Chen SL (2011) Molecular cloning, genomic structure and expression analysis of major histocompatibility complex class I alpha gene of half-smooth tongue sole (Cynoglossus semilaevis). Fish Physiol Biochem 37(1):85-90. doi:10.1007/s10695-010-9419-2
30. Sha Z, Wang S, Zhuang Z, Wang Q, Li P, Ding H, Wang N, Liu Z, Chen S (2010) Generation and analysis of 10 000 ESTs from the half-smooth tongue sole Cynoglossus semilaevis and identification of microsatellite and SNP markers. J Fish Biol 76(5):1190-1204. doi:10.1111/j.1095-8649.2010.02592.x
31. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673-4680 (Pubitemid 24354800)
32. Marchler-Bauer A, Bryant SH (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res 32(Web Server issue):W327-331. doi:10.1093/nar/gkh454
33. Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH (2009) CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res 37(Database Issue):D205-210. doi:10.1093/nar/gkn845
34. Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH (2011) CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 39(Database issue):D225-229. doi:10.1093/nar/ gkq1189
35. Mertens J, Ramadori G, Mihm S (2010) Functional relevance of the IRF-1 promoter polymorphism rs2549009 on transcriptional activity in a native genomic environment. Hum Mol Genet 19(23):4587-4594. doi:10.1093/hmg/ddq386
36. Shi Y, Zhu XP, Yin JK, Zhang QY, Gui JF (2010) Identification and characterization of interferon regulatory factor-1 from orange-spotted grouper (Epinephelus coioides). Mol Biol Rep 37(3):1483-1493. doi:10.1007/s11033-009- 9544-0
37. Escalante CR, Yie J, Thanos D, Aggarwal AK (1998) Structure of IRF-1 with bound DNA reveals determinants of interferon regulation. Nature 391(6662):103-106. doi:10.1038/34224 (Pubitemid 28079225)
38. Kirchhoff S, Oumard A, Nourbakhsh M, Levi BZ, Hauser H (2000) Interplay between repressing and activating domains defines the transcriptional activity of IRF-1. Eur J Biochem/FEBS 267(23):6753-6761
39. Rise ML, Hall JR, Alcock BP, Hori TS (2012) Dynamic expression profiles of virus-responsive and putative antimicrobial peptide-encoding transcripts during Atlantic cod (Gadus morhua) embryonic and early larval development. Gene 509(2):232-246. doi:10.1016/j.gene.2012.08.017