-
1
-
-
84857672615
-
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism
-
22383848, ..;():
-
Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, et al. Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism. Science. 2012;335(6072):1099–103. doi: 10.1126/science.120687122383848
-
(2012)
Science
, vol.335
, Issue.6072
, pp. 1099-1103
-
-
Buescher, J.M.1
Liebermeister, W.2
Jules, M.3
Uhr, M.4
Muntel, J.5
Botella, E.6
-
2
-
-
55749116150
-
Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network
-
18953355, .;():
-
Chechik G, Oh E, Rando O, Weissman J, Regev A, Koller D, Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. Nature Biotechnology. 2008;26(11):1251–9. doi: 10.1038/nbt.149918953355
-
(2008)
Nature Biotechnology
, vol.26
, Issue.11
, pp. 1251-1259
-
-
Chechik, G.1
Oh, E.2
Rando, O.3
Weissman, J.4
Regev, A.5
Koller, D.6
-
3
-
-
84859471521
-
Regulatory architecture determines optimal regulation of gene expression in metabolic pathways
-
22416120, .;():
-
Chubukov V, Zuleta IA, Li H, Regulatory architecture determines optimal regulation of gene expression in metabolic pathways. Proc Natl Acad Sci U S A. 2012;109(13):5127–32. doi: 10.1073/pnas.111423510922416120
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.13
, pp. 5127-5132
-
-
Chubukov, V.1
Zuleta, I.A.2
Li, H.3
-
4
-
-
78650546051
-
RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media
-
21057108, ..;():
-
Conrad TM, Frazier M, Joyce AR, Cho B-K, Knight EM, Lewis NE, et al. RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. Proc Natl Acad Sci U S A. 2010;107(47):20500–5. doi: 10.1073/pnas.091125310721057108
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.47
, pp. 20500-20505
-
-
Conrad, T.M.1
Frazier, M.2
Joyce, A.R.3
Cho, B.-K.4
Knight, E.M.5
Lewis, N.E.6
-
5
-
-
77955501572
-
Achieving optimal growth through product feedback inhibition in metabolism
-
20532205, .;()
-
Goyal S, Yuan J, Chen T, Rabinowitz JD, Wingreen NS, Achieving optimal growth through product feedback inhibition in metabolism. PLoS Comput Biol. 2010;6(6):e1000802. doi: 10.1371/journal.pcbi.100080220532205
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.6
, pp. 1000802
-
-
Goyal, S.1
Yuan, J.2
Chen, T.3
Rabinowitz, J.D.4
Wingreen, N.S.5
-
6
-
-
0034733820
-
Regulating the cellular economy of supply and demand
-
10878248, .;():
-
Hofmeyr J-H, Cornish-Bowden A, Regulating the cellular economy of supply and demand. FEBS Lett. 2000;476(1–2):47–51. 10878248
-
(2000)
FEBS Lett
, vol.476
, Issue.1-2
, pp. 47-51
-
-
Hofmeyr, J.-H.1
Cornish-Bowden, A.2
-
7
-
-
66249146869
-
Stochasticity in protein levels drives colinearity of gene order in metabolic operons of Escherichia coli
-
19492041, .;()
-
Kovács K, Hurst L, Papp B, Stochasticity in protein levels drives colinearity of gene order in metabolic operons of Escherichia coli. PLoS Biol. 2009;7(5):e1000115. doi: 10.1371/journal.pbio.100011519492041
-
(2009)
PLoS Biol
, vol.7
, Issue.5
, pp. 1000115
-
-
Kovács, K.1
Hurst, L.2
Papp, B.3
-
8
-
-
58149168844
-
Spontaneous reaction silencing in metabolic optimization
-
19057639, .;()
-
Nishikawa T, Gulbahce N, Motter AE, Spontaneous reaction silencing in metabolic optimization. PLoS Comput Biol. 2008;4(12):e1000236. doi: 10.1371/journal.pcbi.100023619057639
-
(2008)
PLoS Comput Biol
, vol.4
, Issue.12
, pp. 1000236
-
-
Nishikawa, T.1
Gulbahce, N.2
Motter, A.E.3
-
9
-
-
2442526837
-
Just-in-time transcription program in metabolic pathways
-
15107854, ..;():
-
Zaslaver A, Mayo AE, Rosenberg R, Bashkin P, Sberro H, Tsalyuk M, et al. Just-in-time transcription program in metabolic pathways. Nat Genet. 2004;36(5):486–91. 15107854
-
(2004)
Nat Genet
, vol.36
, Issue.5
, pp. 486-491
-
-
Zaslaver, A.1
Mayo, A.E.2
Rosenberg, R.3
Bashkin, P.4
Sberro, H.5
Tsalyuk, M.6
-
10
-
-
0016788494
-
Optimal design of feedback control by inhibition: dynamic considerations
-
1159800, .;():
-
Savageau MA, Optimal design of feedback control by inhibition: dynamic considerations. J Mol Evol. 1975;5(3):199–222. 1159800
-
(1975)
J Mol Evol
, vol.5
, Issue.3
, pp. 199-222
-
-
Savageau, M.A.1
-
11
-
-
0035112207
-
Irreversibility in unbranched pathways: preferred positions based on regulatory considerations
-
11222282, .;():
-
Alves R, Savageau MA, Irreversibility in unbranched pathways: preferred positions based on regulatory considerations. Biophys J. 2001;80(3):1174–85. 11222282
-
(2001)
Biophys J
, vol.80
, Issue.3
, pp. 1174-1185
-
-
Alves, R.1
Savageau, M.A.2
-
12
-
-
84876838057
-
Evolution after introduction of a novel metabolic pathway consistently leads to restoration of wild-type physiology
-
23593025, .;()
-
Carroll SM, Marx CJ, Evolution after introduction of a novel metabolic pathway consistently leads to restoration of wild-type physiology. PLoS Genet. 2013;9(4):e1003427. doi: 10.1371/journal.pgen.100342723593025
-
(2013)
PLoS Genet
, vol.9
, Issue.4
, pp. 1003427
-
-
Carroll, S.M.1
Marx, C.J.2
-
13
-
-
0023081983
-
Metabolic flux and fitness
-
3104135, .;():
-
Dykhuizen DE, Dean AM, Hartl DL, Metabolic flux and fitness. Genetics. 1987;115(1):25–31. 3104135
-
(1987)
Genetics
, vol.115
, Issue.1
, pp. 25-31
-
-
Dykhuizen, D.E.1
Dean, A.M.2
Hartl, D.L.3
-
14
-
-
77951125481
-
Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity
-
Fendt S-M, Buescher JM, Rudroff F, Picotti P, Zamboni N, Sauer U, Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity. Mol Sys Biol. 2010;6.
-
(2010)
Mol Sys Biol
, vol.6
-
-
Fendt, S.-M.1
Buescher, J.M.2
Rudroff, F.3
Picotti, P.4
Zamboni, N.5
Sauer, U.6
-
15
-
-
77953237121
-
Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli
-
..;
-
Goodarzi H, Bennett BD, Amini S, Reaves ML, Hottes AK, Rabinowitz JD, et al. Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli. Mol Sys Biol. 2010;6:378.
-
(2010)
Mol Sys Biol
, vol.6
, pp. 378
-
-
Goodarzi, H.1
Bennett, B.D.2
Amini, S.3
Reaves, M.L.4
Hottes, A.K.5
Rabinowitz, J.D.6
-
16
-
-
0020412175
-
Evolution of a regulated operon in the laboratory
-
6816666, .;():
-
Hall BG, Evolution of a regulated operon in the laboratory. Genetics. 1982;101(3–4):335–44. 6816666
-
(1982)
Genetics
, vol.101
, Issue.3-4
, pp. 335-344
-
-
Hall, B.G.1
-
17
-
-
84856018572
-
Growth, metabolic partitioning, and the size of microorganisms
-
22203990, .;():
-
Kempes CP, Dutkiewicz S, Follows MJ, Growth, metabolic partitioning, and the size of microorganisms. Proc Natl Acad Sci U S A. 2012;109(2):495–500. doi: 10.1073/pnas.111558510922203990
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, Issue.2
, pp. 495-500
-
-
Kempes, C.P.1
Dutkiewicz, S.2
Follows, M.J.3
-
19
-
-
70149090575
-
On the accessibility of adaptive phenotypes of a bacterial metabolic network
-
19696877, .;()
-
Ndifon W, Plotkin JB, Dushoff J, On the accessibility of adaptive phenotypes of a bacterial metabolic network. PLoS Comput Biol. 2009;5(8):e1000472. doi: 10.1371/journal.pcbi.100047219696877
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.8
, pp. 1000472
-
-
Ndifon, W.1
Plotkin, J.B.2
Dushoff, J.3
-
20
-
-
78049422553
-
Evolution under fluctuating environments explains observed robustness in metabolic networks
-
20865149, .;()
-
Soyer OS, Pfeiffer T, Evolution under fluctuating environments explains observed robustness in metabolic networks. PLoS Comput Biol. 2010;6(8):e1000907. doi: 10.1371/journal.pcbi.100090720865149
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.8
, pp. 1000907
-
-
Soyer, O.S.1
Pfeiffer, T.2
-
21
-
-
0041914463
-
Metabolic switching in the sugar phosphotransferase system of Escherichia coli
-
12885625, .;():
-
Thattai M, Shraiman BI, Metabolic switching in the sugar phosphotransferase system of Escherichia coli. Biophys J. 2003;85(2):744–54. 12885625
-
(2003)
Biophys J
, vol.85
, Issue.2
, pp. 744-754
-
-
Thattai, M.1
Shraiman, B.I.2
-
22
-
-
23144432213
-
Optimality and evolutionary tuning of the expression level of a protein
-
16049495, .;():
-
Dekel E, Alon U, Optimality and evolutionary tuning of the expression level of a protein. Nature. 2005;436(7050):588–92. 16049495
-
(2005)
Nature
, vol.436
, Issue.7050
, pp. 588-592
-
-
Dekel, E.1
Alon, U.2
-
23
-
-
79960958913
-
Nonlinear fitness landscape of a molecular pathway
-
21814515, .;()
-
Perfeito L, Ghozzi S, Berg J, Schnetz K, Lässig M, Nonlinear fitness landscape of a molecular pathway. PLoS Genet. 2011;7(7):e1002160. doi: 10.1371/journal.pgen.100216021814515
-
(2011)
PLoS Genet
, vol.7
, Issue.7
, pp. 1002160
-
-
Perfeito, L.1
Ghozzi, S.2
Berg, J.3
Schnetz, K.4
Lässig, M.5
-
24
-
-
73349086264
-
Cellular stress created by intermediary metabolite imbalances
-
19887636, .;():
-
Lee SJ, Trostel A, Le P, Harinarayanan R, Fitzgerald PC, Adhya S, Cellular stress created by intermediary metabolite imbalances. Proc Natl Acad Sci USA. 2009;106(46):19515–20. doi: 10.1073/pnas.091058610619887636
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.46
, pp. 19515-19520
-
-
Lee, S.J.1
Trostel, A.2
Le, P.3
Harinarayanan, R.4
Fitzgerald, P.C.5
Adhya, S.6
-
25
-
-
45149128433
-
The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products
-
18245823, .;():
-
Stoebel DM, Dean AM, Dykhuizen DE, The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products. Genetics. 2008;178(3):1653–60. doi: 10.1534/genetics.107.08539918245823
-
(2008)
Genetics
, vol.178
, Issue.3
, pp. 1653-1660
-
-
Stoebel, D.M.1
Dean, A.M.2
Dykhuizen, D.E.3
-
26
-
-
0018145317
-
Transport by the lactose permease of Escherichia coli as the basis of lactose killing
-
99437, .;():
-
Dykhuizen D, Hartl D, Transport by the lactose permease of Escherichia coli as the basis of lactose killing. J Bacteriol. 1978;135(3):876–82. 99437
-
(1978)
J Bacteriol
, vol.135
, Issue.3
, pp. 876-882
-
-
Dykhuizen, D.1
Hartl, D.2
-
27
-
-
0013936145
-
“Substrate-accelerated death” of nitrogen-limited bacteria
-
5338892, .;():
-
Strange RE, Hunter JR, “Substrate-accelerated death” of nitrogen-limited bacteria. J Gen Microbiol. 1966;44(2):255–62. 5338892
-
(1966)
J Gen Microbiol
, vol.44
, Issue.2
, pp. 255-262
-
-
Strange, R.E.1
Hunter, J.R.2
-
28
-
-
0013934936
-
Variation in content and distribution of magnesium, and its influence on survival, in Aerobacter aerogenes grown in a chemostat
-
5969503, .;():
-
Tempest DW, Strange RE, Variation in content and distribution of magnesium, and its influence on survival, in Aerobacter aerogenes grown in a chemostat. J Gen Microbiol. 1966;44(2):273–9. 5969503
-
(1966)
J Gen Microbiol
, vol.44
, Issue.2
, pp. 273-279
-
-
Tempest, D.W.1
Strange, R.E.2
-
29
-
-
17644408005
-
Lactose-induced cell death of beta-galactosidase mutants in Kluyveromyces lactis
-
15851101, .;():
-
Lodi T, Donnini C, Lactose-induced cell death of beta-galactosidase mutants in Kluyveromyces lactis. FEMS Yeast Res. 2005;5(8):727–34. 15851101
-
(2005)
FEMS Yeast Res
, vol.5
, Issue.8
, pp. 727-734
-
-
Lodi, T.1
Donnini, C.2
-
30
-
-
0032077442
-
The danger of metabolic pathways with turbo design
-
9612078, .;():
-
Teusink B, Walsh MC, van Dam K, Westerhoff HV, The danger of metabolic pathways with turbo design. Trends Biochem Sci. 1998;23(5):162–9. 9612078
-
(1998)
Trends Biochem Sci
, vol.23
, Issue.5
, pp. 162-169
-
-
Teusink, B.1
Walsh, M.C.2
van Dam, K.3
Westerhoff, H.V.4
-
31
-
-
84897627707
-
Lost in transition: start-up of glycolysis yields subpopulations of nongrowing cells
-
24436182, ..;()
-
van Heerden JH, Wortel MT, Bruggeman FJ, Heijnen JJ, Bollen YJ, Planqué R, et al. Lost in transition: start-up of glycolysis yields subpopulations of nongrowing cells. Science. 2014;343(6174):1245114. doi: 10.1126/science.124511424436182
-
(2014)
Science
, vol.343
, Issue.6174
, pp. 1245114
-
-
van Heerden, J.H.1
Wortel, M.T.2
Bruggeman, F.J.3
Heijnen, J.J.4
Bollen, Y.J.5
Planqué, R.6
-
32
-
-
0021066915
-
The lac carrier protein in Escherichia coli
-
6358502, .;():
-
Kaback HR, The lac carrier protein in Escherichia coli. J Membr Biol. 1983;76(2):95–112. 6358502
-
(1983)
J Membr Biol
, vol.76
, Issue.2
, pp. 95-112
-
-
Kaback, H.R.1
-
33
-
-
84861204284
-
Cost-benefit tradeoffs in engineered lac operons
-
22605776, .;():
-
Eames M, Kortemme T, Cost-benefit tradeoffs in engineered lac operons. Science. 2012;336(6083):911–5. doi: 10.1126/science.121908322605776
-
(2012)
Science
, vol.336
, Issue.6083
, pp. 911-915
-
-
Eames, M.1
Kortemme, T.2
-
34
-
-
0018959685
-
A defect in carbon catabolite repression associated with uncontrollable and excessive maltose uptake
-
7005623, .;():
-
Entian KD, A defect in carbon catabolite repression associated with uncontrollable and excessive maltose uptake. Mol Gen Genet. 1980;179(1):169–75. 7005623
-
(1980)
Mol Gen Genet
, vol.179
, Issue.1
, pp. 169-175
-
-
Entian, K.D.1
-
35
-
-
4644343922
-
Bacterial persistence as a phenotypic switch
-
15308767, .;():
-
Balaban NQ, Merrin J, Chait R, Kowalik L, Leibler S, Bacterial persistence as a phenotypic switch. Science. 2004;305(5690):1622–5. 15308767
-
(2004)
Science
, vol.305
, Issue.5690
, pp. 1622-1625
-
-
Balaban, N.Q.1
Merrin, J.2
Chait, R.3
Kowalik, L.4
Leibler, S.5
-
36
-
-
77955628762
-
Persister cells
-
20528688, .;:
-
Lewis K, Persister cells. Annu Rev Microbiol. 2010;64:357–72. doi: 10.1146/annurev.micro.112408.13430620528688
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 357-372
-
-
Lewis, K.1
-
37
-
-
84905395314
-
Phenotypic bistability in Escherichia coli's central carbon metabolism
-
.;()
-
Kotte O, Volkmer B, Radzikowski JL, Heinemann M, Phenotypic bistability in Escherichia coli's central carbon metabolism. Mol Sys Biol. 2014;10(7):736.
-
(2014)
Mol Sys Biol
, vol.10
, Issue.7
, pp. 736
-
-
Kotte, O.1
Volkmer, B.2
Radzikowski, J.L.3
Heinemann, M.4
-
38
-
-
28544450485
-
Design principles of a bacterial signalling network
-
16306993, .;():
-
Kollmann M, Løvdok L, Bartholomé K, Timmer J, Sourjik V, Design principles of a bacterial signalling network. Nature. 2005;438(7067):504–7. 16306993
-
(2005)
Nature
, vol.438
, Issue.7067
, pp. 504-507
-
-
Kollmann, M.1
Løvdok, L.2
Bartholomé, K.3
Timmer, J.4
Sourjik, V.5
-
39
-
-
84866055481
-
Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization
-
22956903, .;()
-
Ray JCJ, Igoshin OA, Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization. PLoS Comput Biol. 2012;8(8):e1002672. doi: 10.1371/journal.pcbi.100267222956903
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.8
, pp. 1002672
-
-
Ray, J.C.J.1
Igoshin, O.A.2
-
40
-
-
77956528790
-
Fundamental limits on the suppression of molecular fluctuations
-
20829788, .;():
-
Lestas I, Vinnicombe G, Paulsson J, Fundamental limits on the suppression of molecular fluctuations. Nature. 2010;467(7312):174–8. doi: 10.1038/nature0933320829788
-
(2010)
Nature
, vol.467
, Issue.7312
, pp. 174-178
-
-
Lestas, I.1
Vinnicombe, G.2
Paulsson, J.3
-
41
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
19561621, .;():
-
Bennett BD, Kimball EH, Gao M, Osterhout R, Van Dien SJ, Rabinowitz JD, Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nat Chem Biol. 2009;5(8):593–9. doi: 10.1038/nchembio.18619561621
-
(2009)
Nat Chem Biol
, vol.5
, Issue.8
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
Van Dien, S.J.5
Rabinowitz, J.D.6
-
42
-
-
56949098506
-
Molecular titration and ultrasensitivity in regulatory networks
-
18938177, .;():
-
Buchler NE, Louis M, Molecular titration and ultrasensitivity in regulatory networks. J Mol Biol. 2008;384(5):1106–19. doi: 10.1016/j.jmb.2008.09.07918938177
-
(2008)
J Mol Biol
, vol.384
, Issue.5
, pp. 1106-1119
-
-
Buchler, N.E.1
Louis, M.2
-
43
-
-
84861108510
-
Mapping the environmental fitness landscape of a synthetic gene circuit
-
22511863, .;()
-
Nevozhay D, Adams RM, Van Itallie E, Bennett MR, Balázsi G, Mapping the environmental fitness landscape of a synthetic gene circuit. PLoS Comput Biol. 2012;8(4):e1002480. doi: 10.1371/journal.pcbi.100248022511863
-
(2012)
PLoS Comput Biol
, vol.8
, Issue.4
, pp. 1002480
-
-
Nevozhay, D.1
Adams, R.M.2
Van Itallie, E.3
Bennett, M.R.4
Balázsi, G.5
-
44
-
-
84857467293
-
Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli
-
22253602, ..;()
-
Quan S, Ray JCJ, Kwota Z, Duong T, Balázsi G, Cooper TF, et al. Adaptive evolution of the lactose utilization network in experimentally evolved populations of Escherichia coli. PLoS Genet. 2012;8(1):e1002444. doi: 10.1371/journal.pgen.100244422253602
-
(2012)
PLoS Genet
, vol.8
, Issue.1
, pp. 1002444
-
-
Quan, S.1
Ray, J.C.J.2
Kwota, Z.3
Duong, T.4
Balázsi, G.5
Cooper, T.F.6
-
45
-
-
72249097352
-
Growth rate-dependent global effects on gene expression in bacteria
-
20064380, .;():
-
Klumpp S, Zhang Z, Hwa T, Growth rate-dependent global effects on gene expression in bacteria. Cell. 2009;139(7):1366–75. doi: 10.1016/j.cell.2009.12.00120064380
-
(2009)
Cell
, vol.139
, Issue.7
, pp. 1366-1375
-
-
Klumpp, S.1
Zhang, Z.2
Hwa, T.3
-
46
-
-
0036284194
-
Escherichia coli survival in groundwater and effluent measured using a combination of propidium iodide and the green fluorescent protein
-
12067376, .;():
-
Banning N, Toze S, Mee BJ, Escherichia coli survival in groundwater and effluent measured using a combination of propidium iodide and the green fluorescent protein. J Appl Microbiol. 2002;93(1):69–76. 12067376
-
(2002)
J Appl Microbiol
, vol.93
, Issue.1
, pp. 69-76
-
-
Banning, N.1
Toze, S.2
Mee, B.J.3
-
47
-
-
43149116340
-
Single-cell protein induction dynamics reveals a period of vulnerability to antibiotics in persister bacteria
-
18427112, .;():
-
Gefen O, Gabay C, Mumcuoglu M, Engel G, Balaban NQ, Single-cell protein induction dynamics reveals a period of vulnerability to antibiotics in persister bacteria. Proc Natl Acad Sci USA. 2008;105(16):6145–9. doi: 10.1073/pnas.071171210518427112
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.16
, pp. 6145-6149
-
-
Gefen, O.1
Gabay, C.2
Mumcuoglu, M.3
Engel, G.4
Balaban, N.Q.5
-
48
-
-
84878204775
-
Metabolic control of persister formation in Escherichia coli
-
23665232, .;():
-
Amato SM, Orman MA, Brynildsen MP, Metabolic control of persister formation in Escherichia coli. Mol Cell. 2013;50(4):475–87. doi: 10.1016/j.molcel.2013.04.00223665232
-
(2013)
Mol Cell
, vol.50
, Issue.4
, pp. 475-487
-
-
Amato, S.M.1
Orman, M.A.2
Brynildsen, M.P.3
-
49
-
-
0346492817
-
Persister cells and tolerance to antimicrobials
-
14734160, .;():
-
Keren I, Kaldalu N, Spoering A, Wang Y, Lewis K, Persister cells and tolerance to antimicrobials. FEMS Microbiol Lett. 2004;230(1):13–8. 14734160
-
(2004)
FEMS Microbiol Lett
, vol.230
, Issue.1
, pp. 13-18
-
-
Keren, I.1
Kaldalu, N.2
Spoering, A.3
Wang, Y.4
Lewis, K.5
-
50
-
-
84859841638
-
Signaling-mediated bacterial persister formation
-
22426114, .;():
-
Vega NM, Allison KR, Khalil AS, Collins JJ, Signaling-mediated bacterial persister formation. Nat Chem Biol. 2012;8(5):431–3. doi: 10.1038/nchembio.91522426114
-
(2012)
Nat Chem Biol
, vol.8
, Issue.5
, pp. 431-433
-
-
Vega, N.M.1
Allison, K.R.2
Khalil, A.S.3
Collins, J.J.4
-
51
-
-
84897948007
-
The role of metabolism in bacterial persistence
-
24624123, ..;
-
Amato SM, Fazen CH, Henry TC, Mok WW, Orman MA, Sandvik EL, et al. The role of metabolism in bacterial persistence. Front Microbiol. 2014;5:70. doi: 10.3389/fmicb.2014.0007024624123
-
(2014)
Front Microbiol
, vol.5
, pp. 70
-
-
Amato, S.M.1
Fazen, C.H.2
Henry, T.C.3
Mok, W.W.4
Orman, M.A.5
Sandvik, E.L.6
-
52
-
-
67049145664
-
The chromosomal toxin gene yafQ is a determinant of multidrug tolerance for Escherichia coli growing in a biofilm
-
19307375, ..;():
-
Harrison JJ, Wade WD, Akierman S, Vacchi-Suzzi C, Stremick CA, Turner RJ, et al. The chromosomal toxin gene yafQ is a determinant of multidrug tolerance for Escherichia coli growing in a biofilm. Antimicrob Agents Chemother. 2009;53(6):2253–8. doi: 10.1128/AAC.00043-0919307375
-
(2009)
Antimicrob Agents Chemother
, vol.53
, Issue.6
, pp. 2253-2258
-
-
Harrison, J.J.1
Wade, W.D.2
Akierman, S.3
Vacchi-Suzzi, C.4
Stremick, C.A.5
Turner, R.J.6
-
53
-
-
0017151539
-
Thiogalactoside transacetylase of the lactose operon as an enzyme for detoxification
-
789355, .;():
-
Andrews KJ, Lin ECC, Thiogalactoside transacetylase of the lactose operon as an enzyme for detoxification. J Bacteriol. 1976;128(1):510–3. 789355
-
(1976)
J Bacteriol
, vol.128
, Issue.1
, pp. 510-513
-
-
Andrews, K.J.1
Lin, E.C.C.2
-
54
-
-
70349329931
-
Cells need safety valves
-
19472369, .;():
-
Danchin A, Cells need safety valves. BioEssays. 2009;31(7):769–73. doi: 10.1002/bies.20090002419472369
-
(2009)
BioEssays
, vol.31
, Issue.7
, pp. 769-773
-
-
Danchin, A.1
-
55
-
-
0033032442
-
Autoregulation of lactose uptake through the LacY permease by enzyme IIAGlc of the PTS in Escherichia coli K-12
-
10209753, .;():
-
Hogema BM, Arents JC, Bader R, Postma PW, Autoregulation of lactose uptake through the LacY permease by enzyme IIAGlc of the PTS in Escherichia coli K-12. Molecular microbiology. 1999;31(6):1825–33. 10209753
-
(1999)
Molecular microbiology
, vol.31
, Issue.6
, pp. 1825-1833
-
-
Hogema, B.M.1
Arents, J.C.2
Bader, R.3
Postma, P.W.4
-
57
-
-
33845368513
-
COPASI—a COmplex PAthway SImulator
-
..;():
-
Hoops S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, et al. COPASI—a COmplex PAthway SImulator. Bioinformatics (Oxford, England). 2006;22(24):3067–74.
-
(2006)
Bioinformatics (Oxford, England)
, vol.22
, Issue.24
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Gauges, R.3
Lee, C.4
Pahle, J.5
Simus, N.6
-
58
-
-
80051950768
-
StochKit2: software for discrete stochastic simulation of biochemical systems with events
-
.;():
-
Sanft K, Wu S, Roh M, Fu J, Lim RK, Petzold L, StochKit2: software for discrete stochastic simulation of biochemical systems with events. Bioinformatics (Oxford, England). 2011;27(17):2457–8.
-
(2011)
Bioinformatics (Oxford, England)
, vol.27
, Issue.17
, pp. 2457-2458
-
-
Sanft, K.1
Wu, S.2
Roh, M.3
Fu, J.4
Lim, R.K.5
Petzold, L.6
-
59
-
-
84876556918
-
EcoCyc: fusing model organism databases with systems biology
-
..;():
-
Keseler IM, Mackie A, Peralta-Gil M, Santos-Zavaleta A, Gama-Castro S, Bonavides-Martínez C, et al. EcoCyc: fusing model organism databases with systems biology. Nucleic Acids Res. 2013;41(D1):D605–D12.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.D1
, pp. 12-605
-
-
Keseler, I.M.1
Mackie, A.2
Peralta-Gil, M.3
Santos-Zavaleta, A.4
Gama-Castro, S.5
Bonavides-Martínez, C.6
-
60
-
-
0031888525
-
Major facilitator superfamily
-
9529885, .;():
-
Pao SS, Paulsen IT, Saier MH, Major facilitator superfamily. Microbiol Mol Biol Rev. 1998;62(1):1–34. 9529885
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, Issue.1
, pp. 1-34
-
-
Pao, S.S.1
Paulsen, I.T.2
Saier, M.H.3
-
61
-
-
70350686881
-
Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3)
-
19786035, ..;():
-
Jeong H, Barbe V, Lee CH, Vallenet D, Yu DS, Choi S-H, et al. Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3). J Mol Biol. 2009;394(4):644–52. doi: 10.1016/j.jmb.2009.09.05219786035
-
(2009)
J Mol Biol
, vol.394
, Issue.4
, pp. 644-652
-
-
Jeong, H.1
Barbe, V.2
Lee, C.H.3
Vallenet, D.4
Yu, D.S.5
Choi, S.-H.6
-
62
-
-
84891774001
-
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
-
..;():
-
Caspi R, Altman T, Billington R, Dreher K, Foerster H, Fulcher CA, et al. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. Nucleic Acids Res. 2014;42(D1):D459–D71.
-
(2014)
Nucleic Acids Res
, vol.42
, Issue.D1
, pp. 71-459
-
-
Caspi, R.1
Altman, T.2
Billington, R.3
Dreher, K.4
Foerster, H.5
Fulcher, C.A.6
|