-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
Baba, T., T. Ara, M. Hasegawa, Y. Takai, Y. Okumura, M. Baba, K. A. Kirill, M. Tomita, B. L. Wanner, and H. Mori. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol. 2:2006.0008.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Kirill, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
2
-
-
4644343922
-
Bacterial persistence as a phenotypic switch
-
DOI 10.1126/science.1099390
-
Balaban, N. Q., J. Merrin, R. Chait, L. Kowalik, and S. Leibler. 2004. Bacterial persistence as a phenotypic switch. Science 305:1622-1625. (Pubitemid 39296357)
-
(2004)
Science
, vol.305
, Issue.5690
, pp. 1622-1625
-
-
Balaban, N.Q.1
Merrin, J.2
Chait, R.3
Kowalik, L.4
Leibler, S.5
-
3
-
-
50349141358
-
Treatment of staphylococcal infections with penicillin
-
Bigger, J. W. 1944. Treatment of staphylococcal infections with penicillin. Lancet ii:497-500.
-
(1944)
Lancet
, vol.2
, pp. 497-500
-
-
Bigger, J.W.1
-
4
-
-
0028270774
-
Autoregulation of hip, an operon that affects lethality due to inhibition of peptidoglycan or DNA synthesis
-
Black, D. S., B. Irwin, and H. S. Moyed. 1994. Autoregulation of hip, an operon that affects lethality due to inhibition of peptidoglycan or DNA synthesis. J. Bacteriol. 176:4081-4091.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 4081-4091
-
-
Black, D.S.1
Irwin, B.2
Moyed, H.S.3
-
5
-
-
0025940779
-
Structure and organization of hip, an operon that affects lethality due to inhibition of peptidoglycan or DNA synthesis
-
Black, D. S., A. J. Kelly, M. J. Mardis, and H. S. Moyed. 1991. Structure and organization of hip, an operon that affects lethality due to inhibition of peptidoglycan or DNA synthesis. J. Bacteriol. 173:5732-5739.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 5732-5739
-
-
Black, D.S.1
Kelly, A.J.2
Mardis, M.J.3
Moyed, H.S.4
-
6
-
-
0034002551
-
A dose-response study of antibiotic resistance in Pseudomonas aeruginosa biofilms
-
Brooun, A., S. Liu, and K. Lewis. 2000. A dose-response study of antibiotic resistance in Pseudomonas aeruginosa biofilms. Antimicrob. Agents Chemother. 44:640-646.
-
(2000)
Antimicrob. Agents Chemother.
, vol.44
, pp. 640-646
-
-
Brooun, A.1
Liu, S.2
Lewis, K.3
-
7
-
-
0032908465
-
The Calgary biofilm device: New technology for rapid determination of antibiotic susceptibilities in bacterial biofilms
-
Ceri, H., M. E. Olson, C. Stremick, R. R. Read, D. W. Morck, and A. G. Buret. 1999. The Calgary biofilm device: new technology for rapid determination of antibiotic susceptibilities in bacterial biofilms. J. Clin. Microbiol. 37:1771-1776.
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 1771-1776
-
-
Ceri, H.1
Olson, M.E.2
Stremick, C.3
Read, R.R.4
Morck, D.W.5
Buret, A.G.6
-
8
-
-
0033591467
-
Bacterial biofilms: A common cause of persistent infections
-
DOI 10.1126/science.284.5418.1318
-
Costerton, J. W., P. S. Stewart, and E. P. Greenberg. 1999. Bacterial biofilms: a common cause of persistent infections. Science 284:1318-1322. (Pubitemid 29289651)
-
(1999)
Science
, vol.284
, Issue.5418
, pp. 1318-1322
-
-
Costerton, J.W.1
Stewart, P.S.2
Greenberg, E.P.3
-
10
-
-
33845633785
-
The GacS sensor kinase controls phenotypic reversion of small colony variants isolated from biofilms of Pseudomonas aeruginosa PA14
-
Davies, J. A., J. J. Harrison, L. L. R. Marques, G. R. Foglia, C. A. Stremick, D. G. Storey, R. J. Turner, M. E. Olson, and H. Ceri. 2007. The GacS sensor kinase controls phenotypic reversion of small colony variants isolated from biofilms of Pseudomonas aeruginosa PA14. FEMS Microbiol. Ecol. 59:32-46.
-
(2007)
FEMS Microbiol. Ecol.
, vol.59
, pp. 32-46
-
-
Davies, J.A.1
Harrison, J.J.2
Marques, L.L.R.3
Foglia, G.R.4
Stremick, C.A.5
Storey, D.G.6
Turner, R.J.7
Olson, M.E.8
Ceri, H.9
-
11
-
-
33750489399
-
Bacterial programmed cell death and multicellular behavior in bacteria
-
DOI 10.1371/journal.pgen.0020135
-
Engelberg-Kulka, H., S. Amitai, I. Kolodkin-Gal, and R. Hazan. 2006. Bacterial programmed cell death and multicellular behavior in bacteria. PLOS Genet. 2:1518-1526. (Pubitemid 44656527)
-
(2006)
PLoS Genetics
, vol.2
, Issue.10
, pp. 1518-1526
-
-
Engelberg-Kulka, H.1
Amitai, S.2
Kolodkin-Gal, I.3
Hazan, R.4
-
13
-
-
1842612577
-
Bacterial biofilms: From the natural environment to infectious diseases
-
Hall-Stoodley, L., J. W. Costerton, and P. Stoodley. 2004. Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol. 2:95-108.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 95-108
-
-
Hall-Stoodley, L.1
Costerton, J.W.2
Stoodley, P.3
-
14
-
-
48749089081
-
Role of global regulators and nucleotide metabolism in antibiotic tolerance in Escherichia coli
-
Hansen, S., K. Lewis, and M. Vulić. 2008. Role of global regulators and nucleotide metabolism in antibiotic tolerance in Escherichia coli. Antimicrob. Agents Chemother. 52:2718-2726.
-
(2008)
Antimicrob. Agents Chemother.
, vol.52
, pp. 2718-2726
-
-
Hansen, S.1
Lewis, K.2
Vulić, M.3
-
15
-
-
27144552914
-
Persister cells mediate tolerance to metal oxyanions in Escherichia coli
-
Harrison, J. J., H. Ceri, N. J. Roper, E. A. Badry, K. M. Sproule, and R. J. Turner. 2005. Persister cells mediate tolerance to metal oxyanions in Escherichia coli. Microbiology 151:3181-3195.
-
(2005)
Microbiology
, vol.151
, pp. 3181-3195
-
-
Harrison, J.J.1
Ceri, H.2
Roper, N.J.3
Badry, E.A.4
Sproule, K.M.5
Turner, R.J.6
-
16
-
-
36248981481
-
Multimetal resistance and tolerance in microbial biofilms
-
Harrison, J. J., H. Ceri, and R. J. Turner. 2007. Multimetal resistance and tolerance in microbial biofilms. Nat. Rev. Microbiol. 5:928-938.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 928-938
-
-
Harrison, J.J.1
Ceri, H.2
Turner, R.J.3
-
17
-
-
34547811354
-
Metal ions may suppress or enhance cellular differentiation in Candida albicans and Candida tropicalis biofilms
-
Harrison, J. J., H. Ceri, J. Yerly, M. Rabiei, Y. Hu, R. Martinuzzi, and R. J. Turner. 2007. Metal ions may suppress or enhance cellular differentiation in Candida albicans and Candida tropicalis biofilms. Appl. Environ. Microbiol. 73:4940-4949.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 4940-4949
-
-
Harrison, J.J.1
Ceri, H.2
Yerly, J.3
Rabiei, M.4
Hu, Y.5
Martinuzzi, R.6
Turner, R.J.7
-
18
-
-
33845928921
-
The use of microscopy and three-dimensional visualization to evaluate the structure of microbial biofilms cultivated in the Calgary biofilm device
-
Harrison, J. J., H. Ceri, J. Yerly, C. A. Stremick, Y. Hu, R. Martinuzzi, and R. J. Turner. 2006. The use of microscopy and three-dimensional visualization to evaluate the structure of microbial biofilms cultivated in the Calgary biofilm device. Biol. Proceed. Online 8:194-215.
-
(2006)
Biol. Proceed. Online
, vol.8
, pp. 194-215
-
-
Harrison, J.J.1
Ceri, H.2
Yerly, J.3
Stremick, C.A.4
Hu, Y.5
Martinuzzi, R.6
Turner, R.J.7
-
19
-
-
20444451726
-
Persister cells, the biofilm matrix and tolerance to metal cations in biofilm and planktonic Pseudomonas aeruginosa
-
DOI 10.1111/j.1462-2920.2005.00777.x
-
Harrison, J. J., R. J. Turner, and H. Ceri. 2005. Persister cells, the biofilm matrix and tolerance to metal cations in biofilm and planktonic Pseudomonas aeruginosa. Environ. Microbiol. 7:981-994. (Pubitemid 40817155)
-
(2005)
Environmental Microbiology
, vol.7
, Issue.7
, pp. 981-994
-
-
Harrison, J.J.1
Turner, R.J.2
Ceri, H.3
-
20
-
-
10044266575
-
Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli
-
DOI 10.1128/JB.186.24.8172-8180.2004
-
Keren, I., D. Shah, A. Spoering, N. Kaldalu, and K. Lewis. 2004. Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli. J. Bacteriol. 186:8172-8180. (Pubitemid 39603206)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.24
, pp. 8172-8180
-
-
Keren, I.1
Shah, D.2
Spoering, A.3
Kaldalu, N.4
Lewis, K.5
-
21
-
-
60849133892
-
Toxin-antitoxin systems in Escherichia coli influence biofilm formation through YjgK (TabA) and fimbriae
-
Kim, Y., X. Wang, Q. Ma, X. S. Zhang, and T. K. Wood. 2009. Toxin-antitoxin systems in Escherichia coli influence biofilm formation through YjgK (TabA) and fimbriae. J. Bacteriol. 191:1258-1267.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 1258-1267
-
-
Kim, Y.1
Wang, X.2
Ma, Q.3
Zhang, X.S.4
Wood, T.K.5
-
22
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): Unique resources for biological research
-
Kitigawa, M., T. Ara, M. Arifuzzaman, T. Ioka-Nakamichi, E. Inamoto, H. Toyonaga, and H. Mori. 2005. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12:291-299.
-
(2005)
DNA Res.
, vol.12
, pp. 291-299
-
-
Kitigawa, M.1
Ara, T.2
Arifuzzaman, M.3
Ioka-Nakamichi, T.4
Inamoto, E.5
Toyonaga, H.6
Mori, H.7
-
23
-
-
36448953499
-
Senescence can explain microbial persistence
-
DOI 10.1099/mic.0.2007/006734-0
-
Klapper, I., P. Gilbert, B. P. Ayati, J. Dockery, and P. S. Stewart. 2007. Senescence can explain microbial persistence. Microbiology 153:3623-3630. (Pubitemid 350168240)
-
(2007)
Microbiology
, vol.153
, Issue.11
, pp. 3623-3630
-
-
Klapper, I.1
Gilbert, P.2
Ayati, B.P.3
Dockery, J.4
Stewart, P.S.5
-
24
-
-
42549122192
-
The extracellular death factor: Physiological and genetic factors influencing its production and response in Escherichia coli
-
DOI 10.1128/JB.01918-07
-
Kolodkin-Gal, I., and H. Engelber-Kulka. 2008. The extracellular death factor: physiological and genetic factors influencing its production and response in Escherichia coli. J. Bacteriol. 190:3169-3175. (Pubitemid 351581412)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.9
, pp. 3169-3175
-
-
Kolodkin-Gal, I.1
Engelberg-Kulka, H.2
-
25
-
-
0344826574
-
Characterization of the hipA7 allele of Escherichia coli and evidence that high persistence is governed by (p)ppGpp synthesis
-
Korch, S. B., T. A. Henderson, and T. M. Hill. 2003. Characterization of the hipA7 allele of Escherichia coli and evidence that high persistence is governed by (p)ppGpp synthesis. Mol. Microbiol. 50:1199-1213.
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 1199-1213
-
-
Korch, S.B.1
Henderson, T.A.2
Hill, T.M.3
-
26
-
-
33845607284
-
Persister cells, dormancy and infectious disease
-
Lewis, K. 2007. Persister cells, dormancy and infectious disease. Nat. Rev. Microbiol. 5:48-56.
-
(2007)
Nat. Rev. Microbiol.
, vol.5
, pp. 48-56
-
-
Lewis, K.1
-
27
-
-
34250218203
-
PhoU is a persistence switch involved in persister formation and tolerance to multiple antibiotics and stresses in Escherichia coli
-
DOI 10.1128/AAC.00052-07
-
Li, Y., and Y. Zhang. 2007. PhoU is a persistence switch involved in persister formation and tolerance to multiple antibiotics and stresses in Escherichia coli. Antimicrob. Agents Chemother. 51:2092-2099. (Pubitemid 46903099)
-
(2007)
Antimicrobial Agents and Chemotherapy
, vol.51
, Issue.6
, pp. 2092-2099
-
-
Li, Y.1
Zhang, Y.2
-
28
-
-
0022591020
-
Molecular cloning and expression of hipA, a gene of Escherichia coli K-12 that affects frequency of persistence after inhibition of murein synthesis
-
Moyed, H., and S. Broderick. 1986. Molecular cloning and expression of hipA, a gene of Escherichia coli K-12 that affects frequency of persistence after inhibition of murein synthesis. J. Bacteriol. 166:399-403.
-
(1986)
J. Bacteriol.
, vol.166
, pp. 399-403
-
-
Moyed, H.1
Broderick, S.2
-
29
-
-
0020590028
-
HipA, a newly recognized gene of Escherichia coli K-12 that affects frequency of persistence after inhibition of murein synthesis
-
Moyed, H. S., and K. P. Bertrand. 1983. hipA, a newly recognized gene of Escherichia coli K-12 that affects frequency of persistence after inhibition of murein synthesis. J. Bacteriol. 155:768-775.
-
(1983)
J. Bacteriol.
, vol.155
, pp. 768-775
-
-
Moyed, H.S.1
Bertrand, K.P.2
-
30
-
-
0242523776
-
Bacterial biofilms: An emerging link to disease pathogenesis
-
Parsek, M. R., and P. K. Singh. 2003. Bacterial biofilms: an emerging link to disease pathogenesis. Annu. Rev. Microbiol. 57:677-701.
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 677-701
-
-
Parsek, M.R.1
Singh, P.K.2
-
31
-
-
0033583045
-
Forging a link between biofilms and disease
-
DOI 10.1126/science.283.5409.1837
-
Potera, C. 1998. Forging a link between biofilms and disease. Science 283:1837-1839. (Pubitemid 29144179)
-
(1999)
Science
, vol.283
, Issue.5409
, pp. 1837-1839
-
-
Potera, C.1
-
32
-
-
40849104947
-
Molecular control of bacterial death and lysis
-
Rice, K. C., and K. W. Bayles. 2008. Molecular control of bacterial death and lysis. Microbiol. Mol. Biol. Rev. 72:85-109.
-
(2008)
Microbiol. Mol. Biol. Rev.
, vol.72
, pp. 85-109
-
-
Rice, K.C.1
Bayles, K.W.2
-
33
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2001)
Molecular Cloning: a Laboratory Manual, 3rd Ed.
-
-
Sambrook, J.1
Russell, D.W.2
-
34
-
-
0023804926
-
Conditional impairment of cell division and altered lethality in hipA mutants of Escherichia coli K-12
-
Scherrer, R., and H. S. Moyed. 1988. Conditional impairment of cell division and altered lethality in hipA mutants of Escherichia coli K-12. J. Bacteriol. 170:3321-3326.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 3321-3326
-
-
Scherrer, R.1
Moyed, H.S.2
-
35
-
-
33747436591
-
Persisters: A distinct physiological state of E. coli
-
DOI 10.1186/1471-2180-6-53
-
Shah, D., Z. Zhang, A. Khodursky, N. Kaldalu, K. Kurg, and K. Lewis. 2006. Persisters: a distinct physiological state of E. coli. BMC Microbiol. 6:53. (Pubitemid 44252003)
-
(2006)
BMC Microbiology
, vol.6
, pp. 53
-
-
Shah, D.1
Zhang, Z.2
Khodursky, A.3
Kaldalu, N.4
Kurg, K.5
Lewis, K.6
-
36
-
-
0035173818
-
Biofilm and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials
-
Spoering, A., and K. Lewis. 2001. Biofilm and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials. J. Bacteriol. 183:6746-6751.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6746-6751
-
-
Spoering, A.1
Lewis, K.2
-
37
-
-
33745904995
-
GlpD and PlsB participate in persister cell formation in Escherichia coli
-
Spoering, A. L., M. Vulic, and K. Lewis. 2006. GlpD and PlsB participate in persister cell formation in Escherichia coli. J. Bacteriol. 188:5136-5144.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 5136-5144
-
-
Spoering, A.L.1
Vulic, M.2
Lewis, K.3
-
38
-
-
0035992362
-
Mechanisms of antibiotic resistance in bacterial biofilms
-
Stewart, P. S. 2002. Mechanisms of antibiotic resistance in bacterial biofilms. Int. J. Med. Microbiol. 292:107-113.
-
(2002)
Int. J. Med. Microbiol.
, vol.292
, pp. 107-113
-
-
Stewart, P.S.1
-
39
-
-
0035859467
-
Antibiotic resistance of bacteria in biofilms
-
DOI 10.1016/S0140-6736(01)05321-1
-
Stewart, P. S., and J. W. Costerton. 2001. The antibiotic resistance of bacteria in biofilms. Lancet 358:135-138. (Pubitemid 32709857)
-
(2001)
Lancet
, vol.358
, Issue.9276
, pp. 135-138
-
-
Stewart, P.S.1
Costerton, J.W.2
-
40
-
-
0344736962
-
Clonal variation in maximum specific growth rate and susceptibility towards antimicrobials
-
Sufya, N., D. G. Allison, and P. Gilbert. 2003. Clonal variation in maximum specific growth rate and susceptibility towards antimicrobials. J. Appl. Microbiol. 95:1261-1267.
-
(2003)
J. Appl. Microbiol.
, vol.95
, pp. 1261-1267
-
-
Sufya, N.1
Allison, D.G.2
Gilbert, P.3
-
41
-
-
34548496904
-
What is the benefit to Escherichia coli of having multiple toxin-antitoxin systems in its genome?
-
Tsilibaris, V., G. Maenhaut-Michel, N. Mine, and L. Van Melderen. 2007. What is the benefit to Escherichia coli of having multiple toxin-antitoxin systems in its genome? J. Bacteriol. 189:6101-6108.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 6101-6108
-
-
Tsilibaris, V.1
Maenhaut-Michel, G.2
Mine, N.3
Van Melderen, L.4
-
42
-
-
33646549559
-
Increased persistence in Escherichia coli caused by controlled expression of toxins or other unrelated proteins
-
Vásquez-Laslop, N., H. Lee, and A. A. Neyfakh. 2006. Increased persistence in Escherichia coli caused by controlled expression of toxins or other unrelated proteins. J. Bacteriol. 188:3494-3497.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3494-3497
-
-
Vásquez-Laslop, N.1
Lee, H.2
Neyfakh, A.A.3
|