-
1
-
-
22744439568
-
Evolution at two levels: on genes and form
-
doi:10.1371/journal.pbio.0030245
-
Carroll SB, (2005) Evolution at two levels: on genes and form. PLoS Biol 3: e245 doi:10.1371/journal.pbio.0030245.
-
(2005)
PLoS Biol
, vol.3
-
-
Carroll, S.B.1
-
2
-
-
34547874585
-
Divergence of transcription factor binding sites across related yeast species
-
doi:10.1126/science.1140748
-
Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, et al. (2007) Divergence of transcription factor binding sites across related yeast species. Science 317: 815-819 doi:10.1126/science.1140748.
-
(2007)
Science
, vol.317
, pp. 815-819
-
-
Borneman, A.R.1
Gianoulis, T.A.2
Zhang, Z.D.3
Yu, H.4
Rozowsky, J.5
-
3
-
-
39749116219
-
Regulatory changes underlying expression differences within and between Drosophila species
-
doi:10.1038/ng.77
-
Wittkopp PJ, Haerum BK, Clark AG, (2008) Regulatory changes underlying expression differences within and between Drosophila species. Nat Genet 40: 346-350 doi:10.1038/ng.77.
-
(2008)
Nat Genet
, vol.40
, pp. 346-350
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
-
4
-
-
0027510647
-
Microbial competition: Escherichia coli mutants that take over stationary phase cultures
-
Zambrano MM, Siegele DA, Almirón M, Tormo A, Kolter R, (1993) Microbial competition: Escherichia coli mutants that take over stationary phase cultures. Science 259: 1757-1760.
-
(1993)
Science
, vol.259
, pp. 1757-1760
-
-
Zambrano, M.M.1
Siegele, D.A.2
Almirón, M.3
Tormo, A.4
Kolter, R.5
-
5
-
-
0033068946
-
The generation of multiple co-existing mal-regulatory mutations through polygenic evolution in glucose-limited populations of Escherichia coli
-
Notley-McRobb L, Ferenci T, (1999) The generation of multiple co-existing mal-regulatory mutations through polygenic evolution in glucose-limited populations of Escherichia coli. Environ Microbiol 1: 45-52.
-
(1999)
Environ Microbiol
, vol.1
, pp. 45-52
-
-
Notley-McRobb, L.1
Ferenci, T.2
-
6
-
-
0037417962
-
Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli
-
doi:10.1073/pnas.0334340100
-
Cooper TF, Rozen DE, Lenski RE, (2003) Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli. Proc Natl Acad Sci USA 100: 1072-1077 doi:10.1073/pnas.0334340100.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1072-1077
-
-
Cooper, T.F.1
Rozen, D.E.2
Lenski, R.E.3
-
7
-
-
70349690200
-
Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation
-
doi:10.1371/journal.pgen.1000652
-
Chou H-H, Berthet J, Marx CJ, (2009) Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation. PLoS Genet 5: e1000652 doi:10.1371/journal.pgen.1000652.
-
(2009)
PLoS Genet
, vol.5
-
-
Chou, H.-H.1
Berthet, J.2
Marx, C.J.3
-
8
-
-
72449190549
-
Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation
-
doi:10.1534/genetics.109.107110
-
McDonald MJ, Gehrig SM, Meintjes PL, Zhang X-X, Rainey PB, (2009) Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation. Genetics 183: 1041-1053 doi:10.1534/genetics.109.107110.
-
(2009)
Genetics
, vol.183
, pp. 1041-1053
-
-
McDonald, M.J.1
Gehrig, S.M.2
Meintjes, P.L.3
Zhang, X.-X.4
Rainey, P.B.5
-
9
-
-
77958493094
-
Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation
-
doi:10.1093/gbe/evq035
-
Wang L, Spira B, Zhou Z, Feng L, Maharjan RP, et al. (2010) Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation. Genome Biol Evol 2: 478-487 doi:10.1093/gbe/evq035.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 478-487
-
-
Wang, L.1
Spira, B.2
Zhou, Z.3
Feng, L.4
Maharjan, R.P.5
-
10
-
-
77955955965
-
The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli
-
doi:10.1093/molbev/msq101
-
Stoebel DM, Dorman CJ, (2010) The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli. Mol Biol Evol 27: 2105-2112 doi:10.1093/molbev/msq101.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 2105-2112
-
-
Stoebel, D.M.1
Dorman, C.J.2
-
11
-
-
4143069266
-
Evolutionary genomics of ecological specialization
-
doi:10.1073/pnas.0404397101
-
Zhong S, Khodursky A, Dykhuizen DE, Dean AM, (2004) Evolutionary genomics of ecological specialization. Proc Natl Acad Sci USA 101: 11719-11724 doi:10.1073/pnas.0404397101.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 11719-11724
-
-
Zhong, S.1
Khodursky, A.2
Dykhuizen, D.E.3
Dean, A.M.4
-
12
-
-
33846469818
-
Adaptive diversification in genes that regulate resource use in Escherichia coli
-
doi:10.1371/journal.pgen.0030015
-
Spencer CC, Bertrand M, Travisano M, Doebeli M, (2007) Adaptive diversification in genes that regulate resource use in Escherichia coli. PLoS Genet 3: e15 doi:10.1371/journal.pgen.0030015.
-
(2007)
PLoS Genet
, vol.3
-
-
Spencer, C.C.1
Bertrand, M.2
Travisano, M.3
Doebeli, M.4
-
13
-
-
77649133888
-
Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations
-
doi:10.1186/1471-2148-10-11
-
Cooper TF, Lenski RE, (2010) Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations. BMC Evol Biol 10: 11 doi:10.1186/1471-2148-10-11.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 11
-
-
Cooper, T.F.1
Lenski, R.E.2
-
14
-
-
23144432213
-
Optimality and evolutionary tuning of the expression level of a protein
-
doi:10.1038/nature03842
-
Dekel E, Alon U, (2005) Optimality and evolutionary tuning of the expression level of a protein. Nature 436: 588-592 doi:10.1038/nature03842.
-
(2005)
Nature
, vol.436
, pp. 588-592
-
-
Dekel, E.1
Alon, U.2
-
15
-
-
45149128433
-
The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products
-
doi:10.1534/genetics.107.085399
-
Stoebel DM, Dean AM, Dykhuizen DE, (2008) The cost of expression of Escherichia coli lac operon proteins is in the process, not in the products. Genetics 178: 1653-1660 doi:10.1534/genetics.107.085399.
-
(2008)
Genetics
, vol.178
, pp. 1653-1660
-
-
Stoebel, D.M.1
Dean, A.M.2
Dykhuizen, D.E.3
-
16
-
-
79960958913
-
Nonlinear fitness landscape of a molecular pathway
-
doi:10.1371/journal.pgen.1002160
-
Perfeito L, Ghozzi S, Berg J, Schnetz K, Lässig M, (2011) Nonlinear fitness landscape of a molecular pathway. PLoS Genet 7: e1002160 doi:10.1371/journal.pgen.1002160.
-
(2011)
PLoS Genet
, vol.7
-
-
Perfeito, L.1
Ghozzi, S.2
Berg, J.3
Schnetz, K.4
Lässig, M.5
-
18
-
-
0038610819
-
Detailed map of a cis-regulatory input function
-
doi:10.1073/pnas.1230759100
-
Setty Y, mayo AE, Surette MG, Alon U, (2003) Detailed map of a cis-regulatory input function. Proc Natl Acad Sci USA 100: 7702-7707 doi:10.1073/pnas.1230759100.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 7702-7707
-
-
Setty, Y.1
Mayo, A.E.2
Surette, M.G.3
Alon, U.4
-
19
-
-
1442354192
-
Multistability in the lactose utilization network of Escherichia coli
-
doi:10.1038/nature02298
-
Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A, (2004) Multistability in the lactose utilization network of Escherichia coli. Nature 427: 737-740 doi:10.1038/nature02298.
-
(2004)
Nature
, vol.427
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattai, M.2
Lim, H.N.3
Shraiman, B.I.4
Van Oudenaarden, A.5
-
20
-
-
34347365309
-
The effect of stochasticity on the lac operon: an evolutionary perspective
-
doi:10.1371/journal.pcbi.0030111
-
van Hoek M, Hogeweg P, (2007) The effect of stochasticity on the lac operon: an evolutionary perspective. PLoS Comput Biol 3: e111 doi:10.1371/journal.pcbi.0030111.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
van Hoek, M.1
Hogeweg, P.2
-
21
-
-
34250303137
-
Origin of bistability in the lac Operon
-
doi:10.1529/biophysj.106.101717
-
Santillán M, Mackey MC, Zeron ES, (2007) Origin of bistability in the lac Operon. Biophys J 92: 3830-3842 doi:10.1529/biophysj.106.101717.
-
(2007)
Biophys J
, vol.92
, pp. 3830-3842
-
-
Santillán, M.1
Mackey, M.C.2
Zeron, E.S.3
-
22
-
-
77951129749
-
Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch
-
doi:10.1038/msb.2010.12
-
Robert L, Paul G, Chen Y, Taddei F, Baigl D, et al. (2010) Pre-dispositions and epigenetic inheritance in the Escherichia coli lactose operon bistable switch. Mol Syst Biol pp. 6 doi:10.1038/msb.2010.12.
-
(2010)
Mol Syst Biol
, pp. 6
-
-
Robert, L.1
Paul, G.2
Chen, Y.3
Taddei, F.4
Baigl, D.5
-
23
-
-
0031927611
-
Demand theory of gene regulation. II. Quantitative application to the lactose and maltose operons of Escherichia coli
-
Savageau MA, (1998) Demand theory of gene regulation. II. Quantitative application to the lactose and maltose operons of Escherichia coli. Genetics 149: 1677-1691.
-
(1998)
Genetics
, vol.149
, pp. 1677-1691
-
-
Savageau, M.A.1
-
24
-
-
67049117729
-
Evolutionary selection between alternative modes of gene regulation
-
doi:10.1073/pnas.0808500106
-
Gerland U, Hwa T, (2009) Evolutionary selection between alternative modes of gene regulation. Proc Natl Acad Sci USA 106: 8841-8846 doi:10.1073/pnas.0808500106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 8841-8846
-
-
Gerland, U.1
Hwa, T.2
-
25
-
-
0014468138
-
Control of mixed-substrate utilization in continuous cultures of Escherichia coli
-
Silver RS, Mateles RI, (1969) Control of mixed-substrate utilization in continuous cultures of Escherichia coli. J Bacteriol 97: 535-543.
-
(1969)
J Bacteriol
, vol.97
, pp. 535-543
-
-
Silver, R.S.1
Mateles, R.I.2
-
26
-
-
0000341811
-
An experimental model: bacterial specialists and generalists competing in chemostats
-
Dykhuizen D, Davies M, (1980) An experimental model: bacterial specialists and generalists competing in chemostats. Ecology 61: 1213-1227.
-
(1980)
Ecology
, vol.61
, pp. 1213-1227
-
-
Dykhuizen, D.1
Davies, M.2
-
27
-
-
0001389945
-
Enzyme Induction as an all-or-none phenomenon
-
Novick A, Weiner M, (1957) Enzyme Induction as an all-or-none phenomenon. Proc Natl Acad Sci USA 43: 553-566.
-
(1957)
Proc Natl Acad Sci USA
, vol.43
, pp. 553-566
-
-
Novick, A.1
Weiner, M.2
-
28
-
-
54249083606
-
A stochastic single-molecule event triggers phenotype switching of a bacterial cell
-
doi:10.1126/science.1161427
-
Choi PJ, Cai L, Frieda K, Xie XS, (2008) A stochastic single-molecule event triggers phenotype switching of a bacterial cell. Science 322: 442-446 doi:10.1126/science.1161427.
-
(2008)
Science
, vol.322
, pp. 442-446
-
-
Choi, P.J.1
Cai, L.2
Frieda, K.3
Xie, X.S.4
-
29
-
-
34347232364
-
Combinatorial transcriptional control of the lactose operon of Escherichia coli
-
doi:10.1073/pnas.0606717104
-
Kuhlman T, Zhang Z, Saier MH, Hwa T, (2007) Combinatorial transcriptional control of the lactose operon of Escherichia coli. Proc Natl Acad Sci USA 104: 6043-6048 doi:10.1073/pnas.0606717104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 6043-6048
-
-
Kuhlman, T.1
Zhang, Z.2
Saier, M.H.3
Hwa, T.4
-
30
-
-
0018185292
-
Molecular basis of base substitution hotspots in Escherichia coli
-
Coulondre C, Miller JH, Farabaugh PJ, Gilbert W, (1978) Molecular basis of base substitution hotspots in Escherichia coli. Nature 274: 775-780.
-
(1978)
Nature
, vol.274
, pp. 775-780
-
-
Coulondre, C.1
Miller, J.H.2
Farabaugh, P.J.3
Gilbert, W.4
-
31
-
-
0018242793
-
Genetic studies of the lac repressor. VII. On the molecular nature of spontaneous hotspots in the lacI gene of Escherichia coli
-
Farabaugh PJ, Schmeissner U, Hofer M, Miller JH, (1978) Genetic studies of the lac repressor. VII. On the molecular nature of spontaneous hotspots in the lacI gene of Escherichia coli. J Mol Biol 126: 847-857.
-
(1978)
J Mol Biol
, vol.126
, pp. 847-857
-
-
Farabaugh, P.J.1
Schmeissner, U.2
Hofer, M.3
Miller, J.H.4
-
32
-
-
0028076771
-
Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence
-
doi:10.1006/jmbi.1994.1458
-
Markiewicz P, Kleina LG, Cruz C, Ehret S, Miller JH, (1994) Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence. J Mol Biol 240: 421-433 doi:10.1006/jmbi.1994.1458.
-
(1994)
J Mol Biol
, vol.240
, pp. 421-433
-
-
Markiewicz, P.1
Kleina, L.G.2
Cruz, C.3
Ehret, S.4
Miller, J.H.5
-
33
-
-
0022884567
-
Base substitution mutants of the lac operator: in vivo and in vitro affinities for lac repressor
-
Betz JL, Sasmor HM, Buck F, Insley MY, Caruthers MH, (1986) Base substitution mutants of the lac operator: in vivo and in vitro affinities for lac repressor. Gene 50: 123-132.
-
(1986)
Gene
, vol.50
, pp. 123-132
-
-
Betz, J.L.1
Sasmor, H.M.2
Buck, F.3
Insley, M.Y.4
Caruthers, M.H.5
-
34
-
-
0019332578
-
lac promoter mutations located downstream from the transcription start site
-
Maquat L, Thornton K, (1980) lac promoter mutations located downstream from the transcription start site. J Mol Biol 139: 537-549.
-
(1980)
J Mol Biol
, vol.139
, pp. 537-549
-
-
Maquat, L.1
Thornton, K.2
-
35
-
-
0022409539
-
Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites
-
Mossing MC, Record MT, (1985) Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites. J Mol Biol 186: 295-305.
-
(1985)
J Mol Biol
, vol.186
, pp. 295-305
-
-
Mossing, M.C.1
Record, M.T.2
-
36
-
-
0034641681
-
Operator DNA sequence variation enhances high affinity binding by hinge helix mutants of lactose repressor protein
-
doi:10.1021/bi000924z
-
Falcon CM, Matthews KS, (2000) Operator DNA sequence variation enhances high affinity binding by hinge helix mutants of lactose repressor protein. Biochemistry 39: 11074-11083 doi:10.1021/bi000924z.
-
(2000)
Biochemistry
, vol.39
, pp. 11074-11083
-
-
Falcon, C.M.1
Matthews, K.S.2
-
37
-
-
79957948242
-
Negative epistasis between beneficial mutations in an evolving bacterial population
-
doi:10.1126/science.1203801
-
Khan AI, Dinh DM, Schneider D, Lenski RE, Cooper TF, (2011) Negative epistasis between beneficial mutations in an evolving bacterial population. Science 332: 1193-1196 doi:10.1126/science.1203801.
-
(2011)
Science
, vol.332
, pp. 1193-1196
-
-
Khan, A.I.1
Dinh, D.M.2
Schneider, D.3
Lenski, R.E.4
Cooper, T.F.5
-
38
-
-
0035875668
-
Cell signaling can direct either binary or graded transcriptional responses
-
doi:10.1093/emboj/20.12.3167
-
Biggar SR, Crabtree GR, (2001) Cell signaling can direct either binary or graded transcriptional responses. EMBO J 20: 3167-3176 doi:10.1093/emboj/20.12.3167.
-
(2001)
EMBO J
, vol.20
, pp. 3167-3176
-
-
Biggar, S.R.1
Crabtree, G.R.2
-
39
-
-
0030089476
-
Mechanism responsible for glucose-lactose diauxie in Escherichia coli: challenge to the cAMP model
-
Inada T, Kimata K, Aiba H, (1996) Mechanism responsible for glucose-lactose diauxie in Escherichia coli: challenge to the cAMP model. Genes Cells 1: 293-301.
-
(1996)
Genes Cells
, vol.1
, pp. 293-301
-
-
Inada, T.1
Kimata, K.2
Aiba, H.3
-
40
-
-
47549110972
-
Carbon catabolite repression in bacteria: many ways to make the most out of nutrients
-
doi:10.1038/nrmicro1932
-
Görke B, Stülke J, (2008) Carbon catabolite repression in bacteria: many ways to make the most out of nutrients. Nat Rev Micro 6: 613-624 doi:10.1038/nrmicro1932.
-
(2008)
Nat Rev Micro
, vol.6
, pp. 613-624
-
-
Görke, B.1
Stülke, J.2
-
41
-
-
67650376275
-
Adaptive prediction of environmental changes by microorganisms
-
doi:10.1038/nature08112
-
Mitchell A, Romano GH, Groisman B, Yona A, Dekel E, et al. (2009) Adaptive prediction of environmental changes by microorganisms. Nature 460: 220-224 doi:10.1038/nature08112.
-
(2009)
Nature
, vol.460
, pp. 220-224
-
-
Mitchell, A.1
Romano, G.H.2
Groisman, B.3
Yona, A.4
Dekel, E.5
-
42
-
-
0026279651
-
Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
-
Lenski R, Rose M, Simpson S, (1991) Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am Nat 138: 1315-1341.
-
(1991)
Am Nat
, vol.138
, pp. 1315-1341
-
-
Lenski, R.1
Rose, M.2
Simpson, S.3
-
43
-
-
0347325071
-
Lysogeny at mid-twentieth century: P1, P2, and other experimental systems
-
Bertani G, (2004) Lysogeny at mid-twentieth century: P1, P2, and other experimental systems. J Bacteriol 186: 595-600.
-
(2004)
J Bacteriol
, vol.186
, pp. 595-600
-
-
Bertani, G.1
-
44
-
-
33746415885
-
A comprehensive library of fluorescent transcriptional reporters for Escherichia coli
-
doi:10.1038/nmeth895
-
Zaslaver A, Bren A, Ronen M, Itzkovitz S, Kikoin I, et al. (2006) A comprehensive library of fluorescent transcriptional reporters for Escherichia coli. Nat Meth 3: 623-628 doi:10.1038/nmeth895.
-
(2006)
Nat Meth
, vol.3
, pp. 623-628
-
-
Zaslaver, A.1
Bren, A.2
Ronen, M.3
Itzkovitz, S.4
Kikoin, I.5
-
45
-
-
21444457864
-
A Tn7-based broad-range bacterial cloning and expression system
-
doi:10.1038/nmeth765
-
Choi K-H, Gaynor JB, White KG, Lopez C, Bosio CM, et al. (2005) A Tn7-based broad-range bacterial cloning and expression system. Nat Meth 2: 443-448 doi:10.1038/nmeth765.
-
(2005)
Nat Meth
, vol.2
, pp. 443-448
-
-
Choi, K.-H.1
Gaynor, J.B.2
White, K.G.3
Lopez, C.4
Bosio, C.M.5
-
46
-
-
0025343547
-
The three operators of the lac operon cooperate in repression
-
Oehler S, Eismann ER, Krämer H, Müller-Hill B, (1990) The three operators of the lac operon cooperate in repression. EMBO J 9: 973-979.
-
(1990)
EMBO J
, vol.9
, pp. 973-979
-
-
Oehler, S.1
Eismann, E.R.2
Krämer, H.3
Müller-Hill, B.4
-
47
-
-
56149104588
-
A noncytotoxic DsRed variant for whole-cell labeling
-
doi:10.1038/nmeth.1264
-
Strack RL, Strongin DE, Bhattacharyya D, Tao W, Berman A, et al. (2008) A noncytotoxic DsRed variant for whole-cell labeling. Nat Meth 5: 955-957 doi:10.1038/nmeth.1264.
-
(2008)
Nat Meth
, vol.5
, pp. 955-957
-
-
Strack, R.L.1
Strongin, D.E.2
Bhattacharyya, D.3
Tao, W.4
Berman, A.5
-
48
-
-
78649653296
-
Silent mischief: bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery
-
doi:10.1128/JB.00621-10
-
Ferrières L, Hémery G, Nham T, Guérout A-M, Mazel D, et al. (2010) Silent mischief: bacteriophage Mu insertions contaminate products of Escherichia coli random mutagenesis performed using suicidal transposon delivery plasmids mobilized by broad-host-range RP4 conjugative machinery. J Bacteriol 192: 6418-6427 doi:10.1128/JB.00621-10.
-
(2010)
J Bacteriol
, vol.192
, pp. 6418-6427
-
-
Ferrières, L.1
Hémery, G.2
Nham, T.3
Guérout, A.-M.4
Mazel, D.5
-
49
-
-
33846320476
-
Phosphate-dependent modulation of c-di-GMP levels regulates Pseudomonas fluorescens Pf0-1 biofilm formation by controlling secretion of the adhesin LapA
-
doi:10.1111/j.1365-2958.2006.05539.x
-
Monds RD, Newell PD, Gross RH, O'Toole GA, (2007) Phosphate-dependent modulation of c-di-GMP levels regulates Pseudomonas fluorescens Pf0-1 biofilm formation by controlling secretion of the adhesin LapA. Mol Microbiol 63: 656-679 doi:10.1111/j.1365-2958.2006.05539.x.
-
(2007)
Mol Microbiol
, vol.63
, pp. 656-679
-
-
Monds, R.D.1
Newell, P.D.2
Gross, R.H.3
O'Toole, G.A.4
-
50
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
doi:10.1186/gb-2004-5-10-r80
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80 doi:10.1186/gb-2004-5-10-r80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
51
-
-
65949097067
-
flowCore: a Bioconductor package for high throughput flow cytometry
-
doi:10.1186/1471-2105-10-106
-
Hahne F, LeMeur N, Brinkman RR, Ellis B, Haaland P, et al. (2009) flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinformatics 10: 106 doi:10.1186/1471-2105-10-106.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 106
-
-
Hahne, F.1
LeMeur, N.2
Brinkman, R.R.3
Ellis, B.4
Haaland, P.5
-
52
-
-
40749111960
-
Using flowViz to visualize flow cytometry data
-
doi:10.1093/bioinformatics/btn021
-
Sarkar D, Le Meur N, Gentleman R, (2008) Using flowViz to visualize flow cytometry data. Bioinformatics 24: 878-879 doi:10.1093/bioinformatics/btn021.
-
(2008)
Bioinformatics
, vol.24
, pp. 878-879
-
-
Sarkar, D.1
Le Meur, N.2
Gentleman, R.3
-
53
-
-
0029019484
-
Control of the Escherichia coli rrnB P1 promoter strength by ppGpp
-
Zhang X, Bremer H, (1995) Control of the Escherichia coli rrnB P1 promoter strength by ppGpp. J Biol Chem 270: 11181-11189.
-
(1995)
J Biol Chem
, vol.270
, pp. 11181-11189
-
-
Zhang, X.1
Bremer, H.2
-
54
-
-
1642388599
-
Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli
-
Friesen ML, Saxer G, Travisano M, Doebeli M, (2004) Experimental evidence for sympatric ecological diversification due to frequency-dependent competition in Escherichia coli. Evolution 58: 245-260.
-
(2004)
Evolution
, vol.58
, pp. 245-260
-
-
Friesen, M.L.1
Saxer, G.2
Travisano, M.3
Doebeli, M.4
-
55
-
-
1942487190
-
Improvement of pCVD442, a suicide plasmid for gene allele exchange in bacteria
-
doi:10.1016/j.plasmid.2004.02.003
-
Philippe N, Alcaraz J-P, Coursange E, Geiselmann J, Schneider D, (2004) Improvement of pCVD442, a suicide plasmid for gene allele exchange in bacteria. Plasmid 51: 246-255 doi:10.1016/j.plasmid.2004.02.003.
-
(2004)
Plasmid
, vol.51
, pp. 246-255
-
-
Philippe, N.1
Alcaraz, J.-P.2
Coursange, E.3
Geiselmann, J.4
Schneider, D.5
-
56
-
-
0023992806
-
The mutY gene: a mutator locus in Escherichia coli that generates GC to TA transversions
-
Nghiem Y, Cabrera M, Cupples CG, Miller JH, (1988) The mutY gene: a mutator locus in Escherichia coli that generates GC to TA transversions. Proc Natl Acad Sci USA 85: 2709-2713.
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 2709-2713
-
-
Nghiem, Y.1
Cabrera, M.2
Cupples, C.G.3
Miller, J.H.4
-
57
-
-
0022446219
-
Mechanisms of spontaneous mutagenesis: an analysis of the spectrum of spontaneous mutation in the Escherichia coli lacI gene
-
Schaaper RM, Danforth BN, Glickman BW, (1986) Mechanisms of spontaneous mutagenesis: an analysis of the spectrum of spontaneous mutation in the Escherichia coli lacI gene. J Mol Biol 189: 273-284.
-
(1986)
J Mol Biol
, vol.189
, pp. 273-284
-
-
Schaaper, R.M.1
Danforth, B.N.2
Glickman, B.W.3
-
58
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake JW, (1991) A constant rate of spontaneous mutation in DNA-based microbes. Proc Natl Acad Sci USA 88: 7160-7164.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 7160-7164
-
-
Drake, J.W.1
|