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Volumn 11, Issue 2, 2016, Pages

An active type I-E CRISPR-cas system identified in Streptomyces avermitilis

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; ARTICLE; BACTERIAL GENETICS; BACTERIAL VIABILITY; BACTERIOPHAGE; CONTROLLED STUDY; CRISPR CAS SYSTEM; GENE SEQUENCE; IN VIVO STUDY; NONHUMAN; STREPTOMYCES AVERMITILIS; ESCHERICHIA COLI; GENETICS; STREPTOMYCES;

EID: 84960540542     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0149533     Document Type: Article
Times cited : (25)

References (37)
  • 1
    • 77951104433 scopus 로고    scopus 로고
    • Bacteriophage resistance mechanisms
    • PMID: 20348932
    • Labrie SJ, Samson JE, Moineau S. Bacteriophage resistance mechanisms. Nat Rev Microbiol. 2010; 8 (5):317-27. doi: 10.1038/nrmicro2315 PMID: 20348932
    • (2010) Nat Rev Microbiol. , vol.8 , Issue.5 , pp. 317-327
    • Labrie, S.J.1    Samson, J.E.2    Moineau, S.3
  • 2
    • 49649114086 scopus 로고    scopus 로고
    • Small CRISPR RNAs guide antiviral defense in prokaryotes
    • PMID: 18703739
    • Brouns SJ, Jore MM, Lundgren M, Westra ER, Slijkhuis RJ, Snijders AP, et al. Small CRISPR RNAs guide antiviral defense in prokaryotes. Science. 2008; 321(5891):960-4. doi: 10.1126/science. 1159689 PMID: 18703739
    • (2008) Science , vol.321 , Issue.5891 , pp. 960-964
    • Brouns, S.J.1    Jore, M.M.2    Lundgren, M.3    Westra, E.R.4    Slijkhuis, R.J.5    Snijders, A.P.6
  • 4
    • 84899134190 scopus 로고    scopus 로고
    • CRISPR-cas systems: Prokaryotes upgrade to adaptive immunity
    • PMID: 24766887
    • Barrangou R, Marraffini L. CRISPR-Cas Systems: Prokaryotes Upgrade to Adaptive Immunity. Molecular cell. 2014; 54(2):234-44. doi: 10.1016/j.molcel.2014.03.011 PMID: 24766887
    • (2014) Molecular Cell. , vol.54 , Issue.2 , pp. 234-244
    • Barrangou, R.1    Marraffini, L.2
  • 5
    • 84897440729 scopus 로고    scopus 로고
    • To acquire or resist: The complex biological effects of CRISPR-cas systems
    • PMID: 24582529
    • Bondy-Denomy J, Davidson AR. To acquire or resist: the complex biological effects of CRISPR-Cas systems. Trends in microbiology. 2014; 22(4):218-25. doi: 10.1016/j.tim.2014.01.007 PMID: 24582529
    • (2014) Trends in Microbiology , vol.22 , Issue.4 , pp. 218-225
    • Bondy-Denomy, J.1    Davidson, A.R.2
  • 6
    • 0023600057 scopus 로고
    • Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product
    • PMID: 3316184
    • Ishino Y, Shinagawa H, Makino K, Amemura M, Nakata A. Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product. J Bacteriol. 1987; 169(12):5429-33. doi: 10.1016/0378-1119(87)90153-3 PMID: 3316184
    • (1987) J Bacteriol. , vol.169 , Issue.12 , pp. 5429-5433
    • Ishino, Y.1    Shinagawa, H.2    Makino, K.3    Amemura, M.4    Nakata, A.5
  • 8
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • PMID: 11952905
    • Jansen R, Embden JDAv, Gaastra W, Schouls LM. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol. 2002; 43(6):1565-75. doi: 10.1046/j.1365-2958.2002. 02839.x PMID: 11952905
    • (2002) Mol Microbiol. , vol.43 , Issue.6 , pp. 1565-1575
    • Jansen, R.1    Embden, J.D.A.2    Gaastra, W.3    Schouls, L.M.4
  • 9
    • 77956628107 scopus 로고    scopus 로고
    • Transcription, processing, and function of CRISPR cassettes in Escherichia coli
    • PMID: 20624226
    • Pougach K, Semenova E, Bogdanova E, Datsenko KA, Djordjevic M, Wanner BL, et al. Transcription, Processing, and Function of CRISPR Cassettes in Escherichia coli. Mol Microbiol. 2010; 77(6):1367-79. doi: 10.1111/j.1365-2958.2010.07265.x PMID: 20624226
    • (2010) Mol Microbiol. , vol.77 , Issue.6 , pp. 1367-1379
    • Pougach, K.1    Semenova, E.2    Bogdanova, E.3    Datsenko, K.A.4    Djordjevic, M.5    Wanner, B.L.6
  • 10
    • 34248400310 scopus 로고    scopus 로고
    • A guild of forty-five CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • PMID: 16292354
    • Haft DH, Selengut J, Mongodin EF, Nelson KE. A guild of forty-five CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput Biol. 2005; 1 (6):e60. doi: 10.1371/journal.pcbi.0010060.eor PMID: 16292354
    • (2005) PLoS Comput Biol. , vol.1 , Issue.6 , pp. e60
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 11
    • 77956621546 scopus 로고    scopus 로고
    • H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
    • PMID: 20659289
    • Westra ER, Pul U, Heidrich N, Jore MM, Lundgren M, Stratmann T, et al. H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO. Mol Microbiol. 2010; 77(6):1380-93. doi: 10.1111/j.1365-2958.2010.07315.x PMID: 20659289
    • (2010) Mol Microbiol. , vol.77 , Issue.6 , pp. 1380-1393
    • Westra, E.R.1    Pul, U.2    Heidrich, N.3    Jore, M.M.4    Lundgren, M.5    Stratmann, T.6
  • 12
    • 84864864464 scopus 로고    scopus 로고
    • Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
    • PMID: 22781758
    • Datsenko KA, Pougach K, Tikhonov A, Wanner BL, Severinov K, Semenova E. Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system. Nat Commun. 2012; 3:945. doi: 10.1038/ncomms1937 PMID: 22781758
    • (2012) Nat Commun. , vol.3 , pp. 945
    • Datsenko, K.A.1    Pougach, K.2    Tikhonov, A.3    Wanner, B.L.4    Severinov, K.5    Semenova, E.6
  • 13
    • 84861639567 scopus 로고    scopus 로고
    • Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
    • PMID: 22402487
    • Yosef I, Goren MG, Qimron U. Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli. Nucleic Acids Res. 2012; 40(12):5569-76. doi: 10.1093/nar/gks216 PMID: 22402487
    • (2012) Nucleic Acids Res. , vol.40 , Issue.12 , pp. 5569-5576
    • Yosef, I.1    Goren, M.G.2    Qimron, U.3
  • 15
    • 84883338164 scopus 로고    scopus 로고
    • DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array
    • PMID: 23940313
    • Yosef I, Shitrit D, Goren MG, Burstein D, Pupko T, Qimron U. DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array. Proc Natl Acad Sci U S A. 2013; 110(35):14396-401. doi: 10.1073/pnas.1300108110 PMID: 23940313
    • (2013) Proc Natl Acad Sci U S A , vol.110 , Issue.35 , pp. 14396-14401
    • Yosef, I.1    Shitrit, D.2    Goren, M.G.3    Burstein, D.4    Pupko, T.5    Qimron, U.6
  • 16
    • 84908445494 scopus 로고    scopus 로고
    • Crystal structure of the RNA-guided immune surveillance cascade complex in Escherichia coli
    • PMID: 25118175
    • Zhao H, Sheng G, Wang J, Wang M, Bunkoczi G, Gong W, et al. Crystal structure of the RNA-guided immune surveillance Cascade complex in Escherichia coli. Nature. 2014; 515(7525):147-50. doi: 10.1038/nature13733 PMID: 25118175
    • (2014) Nature , vol.515 , Issue.7525 , pp. 147-150
    • Zhao, H.1    Sheng, G.2    Wang, J.3    Wang, M.4    Bunkoczi, G.5    Gong, W.6
  • 17
    • 79953779608 scopus 로고    scopus 로고
    • Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
    • PMID: 21343909
    • Sinkunas T, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V. Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J. 2011; 30 (7):1335-42. doi: 10.1038/emboj.2011.41 PMID: 21343909
    • (2011) EMBO J. , vol.30 , Issue.7 , pp. 1335-1342
    • Sinkunas, T.1    Gasiunas, G.2    Fremaux, C.3    Barrangou, R.4    Horvath, P.5    Siksnys, V.6
  • 18
    • 0032745552 scopus 로고    scopus 로고
    • Pharmaceutically active secondary metabolites of microorganisms
    • PMID: 10570792
    • Demain AL. Pharmaceutically active secondary metabolites of microorganisms. Appl Microbiol Biotechnol. 1999; 52(4):455-63. doi: 10.1007/s002530051546 PMID: 10570792
    • (1999) Appl Microbiol Biotechnol. , vol.52 , Issue.4 , pp. 455-463
    • Demain, A.L.1
  • 19
    • 79961094542 scopus 로고    scopus 로고
    • Characterization of the multiple CRISPR loci on streptomyces linear plasmid pSHK1
    • Guo P, Cheng Q, Xie P, Fan Y, Jiang W, Qin Z. Characterization of the multiple CRISPR loci on Streptomyces linear plasmid pSHK1. Acta Biochim Biophys Sin (Shanghai). 2011; 43(8):630-9. doi: 10.1093/abbs/gmr052
    • (2011) Acta Biochim Biophys Sin (Shanghai) , vol.43 , Issue.8 , pp. 630-639
    • Guo, P.1    Cheng, Q.2    Xie, P.3    Fan, Y.4    Jiang, W.5    Qin, Z.6
  • 20
    • 0018386220 scopus 로고
    • Avermectins, new family of potent anthelmintic agents: Producing organism and fermentation
    • PMID: 464561
    • Burg RW, Miller BM, Baker EE, Birnbaum J, Currie SA, Hartman R, et al. Avermectins, new family of potent anthelmintic agents: producing organism and fermentation. Antimicrob Agents Chemother. 1979; 15(3):361-7. doi: 10.1128/AAC.15.3.361 PMID: 464561
    • (1979) Antimicrob Agents Chemother , vol.15 , Issue.3 , pp. 361-367
    • Burg, R.W.1    Miller, B.M.2    Baker, E.E.3    Birnbaum, J.4    Currie, S.A.5    Hartman, R.6
  • 21
    • 77953550275 scopus 로고    scopus 로고
    • Complete genomic sequence analysis of the temperate bacteriophage phiSASD1 of streptomyces avermitilis
    • PMID: 20447671
    • Wang S, Qiao X, Liu X, Zhang X, Wang C, Zhao X, et al. Complete genomic sequence analysis of the temperate bacteriophage phiSASD1 of Streptomyces avermitilis. Virology. 2010; 403(1):78-84. doi: 10.1016/j.virol.2010.03.044 PMID: 20447671
    • (2010) Virology , vol.403 , Issue.1 , pp. 78-84
    • Wang, S.1    Qiao, X.2    Liu, X.3    Zhang, X.4    Wang, C.5    Zhao, X.6
  • 22
    • 0026645203 scopus 로고
    • Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to streptomyces spp
    • PMID: 1628843
    • Bierman M, Logan R, O'Brien K, Seno ET, Nagaraja Rao R, Schoner BE. Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene. 1992; 116(1):43-9. doi: 10.1016/0378-1119(92)90627-2 PMID: 1628843
    • (1992) Gene , vol.116 , Issue.1 , pp. 43-49
    • Bierman, M.1    Logan, R.2    O'Brien, K.3    Seno, E.T.4    Nagaraja Rao, R.5    Schoner, B.E.6
  • 25
    • 0035834039 scopus 로고    scopus 로고
    • Genome sequence of an industrial microorganism streptomyces avermitilis: Deducing the ability of producing secondary metabolites
    • PMID: 11572948
    • Omura S, Ikeda H, Ishikawa J, Hanamoto A, Takahashi C, Shinose M, et al. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc Natl Acad Sci U S A. 2001; 98(21):12215-20. doi: 10.1073/pnas.211433198 PMID: 11572948
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.21 , pp. 12215-12220
    • Omura, S.1    Ikeda, H.2    Ishikawa, J.3    Hanamoto, A.4    Takahashi, C.5    Shinose, M.6
  • 26
    • 75849154794 scopus 로고    scopus 로고
    • CRISPI: A CRISPR interactive database
    • PMID: 19846435
    • Rousseau C, Gonnet M, Le Romancer M, Nicolas J. CRISPI: a CRISPR interactive database. Bioinformatics. 2009; 25(24):3317-8. doi: 10.1093/bioinformatics/btp586 PMID: 19846435
    • (2009) Bioinformatics , vol.25 , Issue.24 , pp. 3317-3318
    • Rousseau, C.1    Gonnet, M.2    Le Romancer, M.3    Nicolas, J.4
  • 27
    • 84895823059 scopus 로고    scopus 로고
    • Adaptation of the haloarcula hispanica CRISPR-cas system to a purified virus strictly requires a priming process
    • PMID: 24265226
    • Li M, Wang R, Zhao D, Xiang H. Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process. Nucleic Acids Res. 2014; 42(4):2483-92. doi: 10.1093/nar/gkt1154 PMID: 24265226
    • (2014) Nucleic Acids Res. , vol.42 , Issue.4 , pp. 2483-2492
    • Li, M.1    Wang, R.2    Zhao, D.3    Xiang, H.4
  • 28
    • 84860433123 scopus 로고    scopus 로고
    • CRISPR interference directs strand specific spacer acquisition
    • PMID: 22558257
    • Swarts DC, Mosterd C, van Passel MWJ, Brouns SJ. CRISPR Interference Directs Strand Specific Spacer Acquisition. PLoS One. 2012; 7(4):e35888. doi: 10.1371/journal.pone.0035888 PMID: 22558257
    • (2012) PLoS One , vol.7 , Issue.4 , pp. e35888
    • Swarts, D.C.1    Mosterd, C.2    Van Passel, M.W.J.3    Brouns, S.J.4
  • 29
    • 84904019733 scopus 로고    scopus 로고
    • Detection and characterization of spacer integration intermediates in type I-E CRISPR-cas system
    • PMID: 24920831
    • Arslan Z, Hermanns V, Wurm R, Wagner R, Pul U. Detection and characterization of spacer integration intermediates in type I-E CRISPR-Cas system. Nucleic Acids Res. 2014; 42(12):7884-93. doi: 10.1093/nar/gku510 PMID: 24920831
    • (2014) Nucleic Acids Res. , vol.42 , Issue.12 , pp. 7884-7893
    • Arslan, Z.1    Hermanns, V.2    Wurm, R.3    Wagner, R.4    Pul, U.5
  • 30
  • 31
    • 84870718176 scopus 로고    scopus 로고
    • Memory of viral infections by CRISPR-cas adaptive immune systems: Acquisition of new information
    • PMID: 23123013
    • Fineran PC, Charpentier E. Memory of viral infections by CRISPR-Cas adaptive immune systems: acquisition of new information. Virology. 2012; 434(2):202-9. doi: 10.1016/j.virol.2012.10.003 PMID: 23123013
    • (2012) Virology , vol.434 , Issue.2 , pp. 202-209
    • Fineran, P.C.1    Charpentier, E.2
  • 32
    • 79959963663 scopus 로고    scopus 로고
    • Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
    • PMID: 21646539
    • Semenova E, Jore MM, Datsenko KA, Semenova A, Westra ER, Wanner B, et al. Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence. Proc Natl Acad Sci U S A. 2011; 108(25):10098-103. doi: 10.1073/pnas.1104144108 PMID: 21646539
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.25 , pp. 10098-10103
    • Semenova, E.1    Jore, M.M.2    Datsenko, K.A.3    Semenova, A.4    Westra, E.R.5    Wanner, B.6
  • 33
    • 84862657238 scopus 로고    scopus 로고
    • CRISPR: New horizons in phage resistance and strain identification
    • PMID: 22224556
    • Barrangou R, Horvath P. CRISPR: new horizons in phage resistance and strain identification. Annu Rev Food Sci Technol. 2012; 3:143-62. doi: 10.1146/annurev-food-022811-101134 PMID: 22224556
    • (2012) Annu Rev Food Sci Technol. , vol.3 , pp. 143-162
    • Barrangou, R.1    Horvath, P.2
  • 34
    • 77954869330 scopus 로고    scopus 로고
    • Chromosomal instability in streptomyces avermitilis: Major deletion in the central region and stable circularized chromosome
    • PMID: 20653985
    • Chen W, He F, Zhang X, Chen Z, Wen Y, Li J. Chromosomal instability in Streptomyces avermitilis: major deletion in the central region and stable circularized chromosome. BMC Microbiol. 2010; 10:198. doi: 10.1186/1471-2180-10-198 PMID: 20653985
    • (2010) BMC Microbiol. , vol.10 , pp. 198
    • Chen, W.1    He, F.2    Zhang, X.3    Chen, Z.4    Wen, Y.5    Li, J.6
  • 35
    • 84934947770 scopus 로고    scopus 로고
    • High-efficiency multiplex genome editing of streptomyces species using an engineered CRISPR/Cas system
    • PMID: 25458909
    • Cobb RE, Wang Y, Zhao H. High-Efficiency Multiplex Genome Editing of Streptomyces Species Using an Engineered CRISPR/Cas System. ACS Synth Biol. 2015; 4(6):723-8. doi: 10.1021/sb500351f PMID: 25458909
    • (2015) ACS Synth Biol. , vol.4 , Issue.6 , pp. 723-728
    • Cobb, R.E.1    Wang, Y.2    Zhao, H.3
  • 36
    • 84948382257 scopus 로고    scopus 로고
    • Highly efficient editing of the actinorhodin polyketide chain length factor gene in streptomyces coelicolor M145 using CRISPR/Cas9-codA(sm) combined system
    • Zeng H, Wen S, Xu W, He Z, Zhai G, Liu Y, et al. Highly efficient editing of the actinorhodin polyketide chain length factor gene in Streptomyces coelicolor M145 using CRISPR/Cas9-CodA(sm) combined system. Appl Microbiol Biotechnol. 2015. doi: 10.1007/s00253-015-6931-4
    • (2015) Appl Microbiol Biotechnol
    • Zeng, H.1    Wen, S.2    Xu, W.3    He, Z.4    Zhai, G.5    Liu, Y.6
  • 37
    • 84942864979 scopus 로고    scopus 로고
    • CRISPR-cas: New tools for genetic manipulations from bacterial immunity systems
    • PMID: 26209264
    • Jiang W, Marraffini LA. CRISPR-Cas: New Tools for Genetic Manipulations from Bacterial Immunity Systems. Annu Rev Microbiol. 2015; 69:209-28. doi: 10.1146/annurev-micro-091014-104441 PMID: 26209264
    • (2015) Annu Rev Microbiol. , vol.69 , pp. 209-228
    • Jiang, W.1    Marraffini, L.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.