Chromosomal instability in Streptomyces avermitilis: Major deletion in the central region and stable circularized chromosome

BMC Microbiology

Volumn 10, Issue , 2010, Pages

  Chen, Wei ^a   He, Fei ^a   Zhang, Xiaojuan ^a   Chen, Zhi ^a   Wen, Ying ^a   Li, Jilun ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AVERMECTIN;

ARTICLE; BACTERIAL STRAIN; CELL VIABILITY; CHROMOSOMAL INSTABILITY; CHROMOSOME REARRANGEMENT; CHROMOSOME STRUCTURE; DELETION MUTANT; HOMOLOGOUS RECOMBINATION; INVERTED TERMINAL REPEAT; NONHUMAN; PROMOTER REGION; SEQUENCE HOMOLOGY; STREPTOMYCES; STREPTOMYCES AVERMITILIS; WILD TYPE; BACTERIAL CHROMOSOME; CHEMISTRY; CHROMOSOME DELETION; CONFORMATION; GENETIC RECOMBINATION; GENETICS; LONG TERMINAL REPEAT; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

STREPTOMYCES; STREPTOMYCES AVERMITILIS;

BASE SEQUENCE; CHROMOSOMAL INSTABILITY; CHROMOSOME DELETION; CHROMOSOMES, BACTERIAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RECOMBINATION, GENETIC; STREPTOMYCES; TERMINAL REPEAT SEQUENCES;

EID: 77954869330     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-10-198     Document Type: Article

References (32)

1. Pharmaceutically active secondary metabolites of microorganisms. AL Demain, Appl Microbiol Biotechnol 1999 52 4 455 463 10.1007/s002530051546 10570792
2. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). SD Bentley KF Chater AM Cerdeno-Tarraga GL Challis NR Thomson KD James DE Harris MA Quail H Kieser D Harper A Bateman S Brown G Chandra CW Chen M Collins A Cronin A Fraser A Goble J Hidalgo T Hornsby S Howarth CH Huang T Kieser L Larke L Murphy K Oliver S O'Neil E Rabbinowitsch MA Rajandream K Rutherford S Rutter K Seeger D Saunders S Sharp R Squares S Squares K Taylor T Warren A Wietzorrek J Woodward BG Barrell J Parkhill DA Hopwood, Nature 2002 417 6885 141 147 10.1038/417141a 12000953
3. The chromosomal DNA of Streptomyces lividans 66 is linear. YS Lin HM Kieser DA Hopwood CW Chen, Mol Microbiol 1993 10 5 923 933 10.1111/j.1365-2958. 1993.tb00964.x 7934869
4. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. S Omura H Ikeda J Ishikawa A Hanamoto C Takahashi M Shinose Y Takahashi H Horikawa H Nakazawa T Osonoe H Kikuchi T Shiba Y Sakaki M Hattori, Proc Natl Acad Sci USA 2001 98 21 12215 12220 10.1073/pnas.211433198 11572948
5. Genetic instability of the Streptomyces chromosome. JN Volff J Altenbuchner, Mol Microbiol 1998 27 2 239 246 10.1046/j.1365-2958.1998.00652.x 9484880
6. Stimulation of genetic instability and associated large genomic rearrangements in Streptomyces ambofaciens by three fluoroquinolones. JN Volff D Vandewiele B Decaris, Antimicrob Agents Chemother 1994 38 9 1984 1990 7811007
7. Occurrence of deletions, associated with genetic instability in Streptomyces ambofaciens, is independent of the linearity of the chromosomal DNA. G Fischer B Decaris P Leblond, J Bacteriol 1997 179 14 4553 4558 9226265
8. Chromosomal arm replacement generates a high level of intraspecific polymorphism in the terminal inverted repeats of the linear chromosomal DNA of Streptomyces ambofaciens. G Fischer T Wenner B Decaris P Leblond, Proc Natl Acad Sci USA 1998 95 24 14296 14301 10.1073/pnas.95.24.14296 9826694
9. Analysis of fusion junctions of circularized chromosomes in Streptomyces griseus. D Kameoka A Lezhava H Zenitani K Hiratsu M Kawamoto K Goshi K Inada H Shinkawa H Kinashi, J Bacteriol 1999 181 18 5711 5717 10482512
10. The Streptomyces lividans 66 chromosome contains a 1 MB deletogenic region flanked by two amplifiable regions. M Redenbach F Flett W Piendl I Glocker U Rauland O Wafzig R Kliem P Leblond J Cullum, Mol Gen Genet 1993 241 3-4 255 262 10.1007/BF00284676 8246878
11. Chromosomal arm replacement in Streptomyces griseus. T Uchida M Miyawaki H Kinashi, J Bacteriol 2003 185 3 1120 1124 10.1128/JB.185.3.1120-1124.2003 12533491
12. End-to-end fusion of linear deleted chromosomes initiates a cycle of genome instability in Streptomyces ambofaciens. T Wenner V Roth G Fischer C Fourrier B Aigle B Decaris P Leblond, Mol Microbiol 2003 50 2 411 425 10.1046/j.1365-2958.2003.03698.x 14617168
13. Spontaneous amplification of the actinorhodin gene cluster in Streptomyces coelicolor involving native insertion sequence IS466. EM Widenbrant HH Tsai CW Chen CM Kao, J Bacteriol 2008 190 13 4754 4758 10.1128/JB.00131-08 18441061
14. Streptomyces coelicolor undergoes spontaneous chromosomal end replacement. EM Widenbrant HH Tsai CW Chen CM Kao, J Bacteriol 2007 189 24 9117 9121 10.1128/JB.01049-07 17951388
15. Amplification of the entire kanamycin biosynthetic gene cluster during empirical strain improvement of Streptomyces kanamyceticus. K Yanai T Murakami M Bibb, Proc Natl Acad Sci USA 2006 103 25 9661 9666 10.1073/pnas.0603251103 16766657
16. The unstable melC operon of Streptomyces antibioticus is codeleted with a Tn4811-homologous locus. TW Yu CW Chen, J Bacteriol 1993 175 6 1847 1852 8383668
17. Instability of artificially circularized chromosomes of Streptomyces lividans. YS Lin CW Chen, Mol Microbiol 1997 26 4 709 719 10.1046/j.1365-2958. 1997.5991975.x 9427401
18. Artificial circularization of the chromosome with concomitant deletion of its terminal inverted repeats enhances genetic instability and genome rearrangement in Streptomyces lividans. JN Volff P Viell J Altenbuchner, Mol Gen Genet 1997 253 6 753 760 10.1007/s004380050380 9079887
19. Avermectins, new family of potent anthelmintic agents: producing organism and fermentation. RW Burg BM Miller EE Baker J Birnbaum SA Currie R Hartman YL Kong RL Monaghan G Olson I Putter JB Tunac H Wallick EO Stapley R Oiwa S Omura, Antimicrob Agents Chemother 1979 15 3 361 367 464561
20. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis. H Ikeda J Ishikawa A Hanamoto M Shinose H Kikuchi T Shiba Y Sakaki M Hattori S Omura, Nat Biotechnol 2003 21 5 526 531 10.1038/nbt820 12692562
21. Chromosomal deletion and rearrangement in Streptomyces glaucescens. A Birch A Hausler C Ruttener R Hutter, J Bacteriol 1991 173 11 3531 3538 1675213
22. Genetic instability and strain degeneration in Streptomyces rimosus. B Gravius T Bezmalinovic D Hranueli J Cullum, Appl Environ Microbiol 1993 59 7 2220 2228 8357256
23. Genetic instability and associated genome plasticity in Streptomyces ambofaciens: pulsed-field gel electrophoresis evidence for large DNA alterations in a limited genomic region. P Leblond P Demuyter JM Simonet B Decaris, J Bacteriol 1991 173 13 4229 4233 2061296
24. Genetic instability and hypervariability in Streptomyces ambofaciens: towards an understanding of a mechanism of genome plasticity. P Leblond P Demuyter JM Simonet B Decaris, Mol Microbiol 1990 4 5 707 714 10.1111/j.1365-2958.1990.tb00641.x 2201867
25. New insights into the genetic instability of Streptomyces. P Leblond B Decaris, FEMS Microbiol Lett 1994 123 3 225 232 10.1111/j.1574-6968.1994. tb07229.x 7988906
26. Saccharomyces cerevisiae as a model system to define the chromosomal instability phenotype. CD Putnam V Pennaneach RD Kolodner, Mol Cell Biol 2005 25 16 7226 7238 10.1128/MCB.25.16.7226-7238.2005 16055731
27. Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system. L Aravind EV Koonin, Genome Res 2001 11 8 1365 1374 10.1101/gr.181001 11483577
28. Cycles of chromosome instability are associated with a fragile site and are increased by defects in DNA replication and checkpoint controls in yeast. A Admire L Shanks N Danzl M Wang U Weier W Stevens E Hunt T Weinert, Genes & Dev 2006 20 2 159 173 16384935
29. Once the circle has been broken: dynamics and evolution of Streptomyces chromosomes. CW Chen CH Huang HH Lee HH Tsai R Kirby, Trends Genet 2002 18 10 522 529 10.1016/S0168-9525(02)02752-X 12350342
30. Involvement of glucose catabolism in avermectin production by Streptomyces avermitilis. H Ikeda H Kotaki H Tanaka S Omura, Antimicrob Agents Chemother 1988 32 2 282 284 3364948
31. Practical Streptomyces Genetics. T Kieser MJ Bibb MJ Buttner KF Chater DA Hopwood, Norwich: John Innes Foundation 2000
32. The bidirectional transfer of DNA and RNA to nitrocellulose or diazobenzyloxymethyl-paper. GE Smith MD Summers, Anal Biochem 1980 109 1 123 129 10.1016/0003-2697(80)90019-6 6162401