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Volumn 35, Issue 15, 2016, Pages 2561-2573

Empirical extensions of the lasso penalty to reduce the false discovery rate in high-dimensional Cox regression models

Author keywords

Cox model; False discovery rate; Lasso penalty; Prognostic biomarkers; Variable selection

Indexed keywords

BIOLOGICAL MARKER; TRANSCRIPTOME;

EID: 84960539558     PISSN: 02776715     EISSN: 10970258     Source Type: Journal    
DOI: 10.1002/sim.6927     Document Type: Article
Times cited : (91)

References (46)
  • 1
    • 35848962931 scopus 로고    scopus 로고
    • How to improve reliability and efficiency of research about molecular markers: roles of phases, guidelines, and study design
    • Ransohoff DF. How to improve reliability and efficiency of research about molecular markers: roles of phases, guidelines, and study design. Journal of Clinical Epidemiology 2007; 60(12):1205-1219.
    • (2007) Journal of Clinical Epidemiology , vol.60 , Issue.12 , pp. 1205-1219
    • Ransohoff, D.F.1
  • 2
    • 13444249852 scopus 로고    scopus 로고
    • Prediction of cancer outcome with microarrays: a multiple random validation strategy
    • Michiels S, Koscielny S, Hill C. Prediction of cancer outcome with microarrays: a multiple random validation strategy. The Lancet 2005; 365(9458):488-492.
    • (2005) The Lancet , vol.365 , Issue.9458 , pp. 488-492
    • Michiels, S.1    Koscielny, S.2    Hill, C.3
  • 3
    • 41149173671 scopus 로고    scopus 로고
    • The statistical challenge of false positives with microarrays
    • Michiels S, Hill C. The statistical challenge of false positives with microarrays. Médecine Sciences: M/S 2008; 24(3):317-319.
    • (2008) Médecine Sciences: M/S , vol.24 , Issue.3 , pp. 317-319
    • Michiels, S.1    Hill, C.2
  • 4
    • 78651394465 scopus 로고    scopus 로고
    • Bring on the biomarkers
    • Poste G. Bring on the biomarkers. Nature 2011; 469(7329):156-157.
    • (2011) Nature , vol.469 , Issue.7329 , pp. 156-157
    • Poste, G.1
  • 5
    • 84864225382 scopus 로고    scopus 로고
    • Face up to false positives
    • MacArthur D. Face up to false positives. Nature 2012; 487(7408):427-428.
    • (2012) Nature , vol.487 , Issue.7408 , pp. 427-428
    • MacArthur, D.1
  • 6
    • 84899985461 scopus 로고    scopus 로고
    • Multiple hypothesis testing in genomics
    • Goeman JJ, Solari A. Multiple hypothesis testing in genomics. Statistics in Medicine 2014; 33(11):1946-1978.
    • (2014) Statistics in Medicine , vol.33 , Issue.11 , pp. 1946-1978
    • Goeman, J.J.1    Solari, A.2
  • 7
    • 21444454257 scopus 로고    scopus 로고
    • False discovery rate, sensitivity and sample size for microarray studies
    • Pawitan Y, Michiels S, Koscielny S, Gusnanto A, Ploner A. False discovery rate, sensitivity and sample size for microarray studies. Bioinformatics 2005; 21(13):3017-3024.
    • (2005) Bioinformatics , vol.21 , Issue.13 , pp. 3017-3024
    • Pawitan, Y.1    Michiels, S.2    Koscielny, S.3    Gusnanto, A.4    Ploner, A.5
  • 9
    • 0031015557 scopus 로고    scopus 로고
    • The lasso method for variable selection in the Cox model
    • Tibshirani R. The lasso method for variable selection in the Cox model. Statistics in Medicine 1997; 16(4):385-395.
    • (1997) Statistics in Medicine , vol.16 , Issue.4 , pp. 385-395
    • Tibshirani, R.1
  • 10
    • 33747163541 scopus 로고    scopus 로고
    • High-dimensional graphs and variable selection with the Lasso
    • Meinshausen N, Bühlmann P. High-dimensional graphs and variable selection with the Lasso. The Annals of Statistics 2006; 34:1436-1462.
    • (2006) The Annals of Statistics , vol.34 , pp. 1436-1462
    • Meinshausen, N.1    Bühlmann, P.2
  • 11
    • 77952566299 scopus 로고    scopus 로고
    • High-dimensional Cox models: the choice of penalty as part of the model building process
    • Benner A, Zucknick M, Hielscher T, Ittrich C, Mansmann U. High-dimensional Cox models: the choice of penalty as part of the model building process. Biometrical Journal 2010; 52(1):50-69.
    • (2010) Biometrical Journal , vol.52 , Issue.1 , pp. 50-69
    • Benner, A.1    Zucknick, M.2    Hielscher, T.3    Ittrich, C.4    Mansmann, U.5
  • 12
  • 13
    • 0016355478 scopus 로고
    • A new look at the statistical model identification
    • Akaike H. A new look at the statistical model identification. IEEE Transactions on Automatic Control 1974; 19(6):716-723.
    • (1974) IEEE Transactions on Automatic Control , vol.19 , Issue.6 , pp. 716-723
    • Akaike, H.1
  • 14
    • 84963178774 scopus 로고
    • Further analysts of the data by akaike's information criterion and the finite corrections: Further analysts of the data by akaike's
    • Sugiura N. Further analysts of the data by akaike's information criterion and the finite corrections: Further analysts of the data by akaike's. Communications in Statistics: Theory and Methods 1978; 7(1):13-26.
    • (1978) Communications in Statistics: Theory and Methods , vol.7 , Issue.1 , pp. 13-26
    • Sugiura, N.1
  • 15
    • 0000120766 scopus 로고
    • Estimating the dimension of a model
    • Schwartz G. Estimating the dimension of a model. The Annals of Statistics 1978; 6(2):461-464.
    • (1978) The Annals of Statistics , vol.6 , Issue.2 , pp. 461-464
    • Schwartz, G.1
  • 16
    • 21844523862 scopus 로고
    • The risk inflation criterion for multiple regression
    • Foster DP, George EI. The risk inflation criterion for multiple regression. The Annals of Statistics 1994; 22:1947-1975.
    • (1994) The Annals of Statistics , vol.22 , pp. 1947-1975
    • Foster, D.P.1    George, E.I.2
  • 18
    • 50949108781 scopus 로고    scopus 로고
    • Extended Bayesian information criteria for model selection with large model spaces
    • Chen J, Chen Z. Extended Bayesian information criteria for model selection with large model spaces. Biometrika 2008; 95(3):759-771.
    • (2008) Biometrika , vol.95 , Issue.3 , pp. 759-771
    • Chen, J.1    Chen, Z.2
  • 19
    • 33846114377 scopus 로고    scopus 로고
    • The adaptive lasso and its oracle properties
    • Zou H. The adaptive lasso and its oracle properties. Journal of the American Statistical Association 2006; 101(476):1418-1429.
    • (2006) Journal of the American Statistical Association , vol.101 , Issue.476 , pp. 1418-1429
    • Zou, H.1
  • 20
    • 34548151636 scopus 로고    scopus 로고
    • Adaptive lasso for Cox's proportional hazards model
    • Zhang HH, Lu W. Adaptive lasso for Cox's proportional hazards model. Biometrika 2007; 94(3):691-703.
    • (2007) Biometrika , vol.94 , Issue.3 , pp. 691-703
    • Zhang, H.H.1    Lu, W.2
  • 26
    • 77950537175 scopus 로고    scopus 로고
    • Regularization paths for generalized linear models via coordinate descent
    • Friedman J, Hastie T, Tibshirani R. Regularization paths for generalized linear models via coordinate descent. Journal of Statistical Software 2010; 33(1):1.
    • (2010) Journal of Statistical Software , vol.33 , Issue.1 , pp. 1
    • Friedman, J.1    Hastie, T.2    Tibshirani, R.3
  • 28
    • 51049096710 scopus 로고    scopus 로고
    • Adaptive lasso for sparse high-dimensional regression models
    • Huang J, Ma S, Zhang C. Adaptive lasso for sparse high-dimensional regression models. Statistica Sinica 2008; 18(4):1603-1618.
    • (2008) Statistica Sinica , vol.18 , Issue.4 , pp. 1603-1618
    • Huang, J.1    Ma, S.2    Zhang, C.3
  • 29
  • 30
    • 79960978269 scopus 로고    scopus 로고
    • The adaptive and the thresholded lasso for potentially misspecified models (and a lower bound for the Lasso)
    • van de Geer S, Bühlmann P, Zhou S. The adaptive and the thresholded lasso for potentially misspecified models (and a lower bound for the Lasso). Electronic Journal of Statistics 2011; 5:688-749.
    • (2011) Electronic Journal of Statistics , vol.5 , pp. 688-749
    • van de Geer, S.1    Bühlmann, P.2    Zhou, S.3
  • 32
    • 84971380122 scopus 로고    scopus 로고
    • lol: lots of lasso, R-package version 1.16.0.(last assess: 12/08/2015).
    • Yuan Y. lol: lots of lasso, 2015. R-package version 1.16.0. http://bioconductor.org/packages/release/bioc/html/lol.html (last assess: 12/08/2015).
    • (2015)
    • Yuan, Y.1
  • 33
    • 70450228445 scopus 로고    scopus 로고
    • Shrinkage-based diagonal discriminant analysis and its applications in high-dimensional data
    • Pang H, Tong T, Zhao H. Shrinkage-based diagonal discriminant analysis and its applications in high-dimensional data. Biometrics 2009; 65(4):1021-1029.
    • (2009) Biometrics , vol.65 , Issue.4 , pp. 1021-1029
    • Pang, H.1    Tong, T.2    Zhao, H.3
  • 34
    • 0036020944 scopus 로고    scopus 로고
    • Operating characteristics and extensions of the false discovery rate procedure
    • Genovese C, Wasserman L. Operating characteristics and extensions of the false discovery rate procedure. Journal of the Royal Statistical Society, Ser. B 2002; 64(3):499-517.
    • (2002) Journal of the Royal Statistical Society, Ser. B , vol.64 , Issue.3 , pp. 499-517
    • Genovese, C.1    Wasserman, L.2
  • 36
    • 79954466848 scopus 로고    scopus 로고
    • On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data
    • Uno H, Cai T, Pencina MJ, D'Agostino RB, Wei LJ. On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data. Statistics in Medicine 2011; 30(10):1105-1117.
    • (2011) Statistics in Medicine , vol.30 , Issue.10 , pp. 1105-1117
    • Uno, H.1    Cai, T.2    Pencina, M.J.3    D'Agostino, R.B.4    Wei, L.J.5
  • 37
    • 84866436885 scopus 로고    scopus 로고
    • A comparison of estimators to evaluate the discriminatory power of time-to-event models
    • Schmid M, Potapov S. A comparison of estimators to evaluate the discriminatory power of time-to-event models. Statistics in Medicine 2012; 31(23):2588-2609.
    • (2012) Statistics in Medicine , vol.31 , Issue.23 , pp. 2588-2609
    • Schmid, M.1    Potapov, S.2
  • 38
    • 84928174777 scopus 로고    scopus 로고
    • survAUC: estimators of prediction accuracy for time-to-event data
    • R-package version 1.0-5.(last assess: 12/08/2015).
    • Potapov S, Adler W, Schmid M. survAUC: estimators of prediction accuracy for time-to-event data, 2015. R-package version 1.0-5. https://cran.r-project.org/web/packages/survAUC (last assess: 12/08/2015).
    • (2015)
    • Potapov, S.1    Adler, W.2    Schmid, M.3
  • 39
  • 41
    • 65949107334 scopus 로고    scopus 로고
    • SCUBE2 suppresses breast tumor cell proliferation and confers a favorable prognosis in invasive breast cancer
    • Cheng CJ, Lin YC, Tsai MT, Chen CS, Hsieh MC, Chen CL, Yang RB. SCUBE2 suppresses breast tumor cell proliferation and confers a favorable prognosis in invasive breast cancer. Cancer Research 2009; 69(8):3634-3641.
    • (2009) Cancer Research , vol.69 , Issue.8 , pp. 3634-3641
    • Cheng, C.J.1    Lin, Y.C.2    Tsai, M.T.3    Chen, C.S.4    Hsieh, M.C.5    Chen, C.L.6    Yang, R.B.7
  • 42
    • 84984920648 scopus 로고    scopus 로고
    • Effects of human arylamine N-acetyltransferase I knockdown in triple-negative breast cancer cell lines
    • Tiang JM, Butcher NJ, Minchin RF. Effects of human arylamine N-acetyltransferase I knockdown in triple-negative breast cancer cell lines. Cancer Medicine 2015; 4(4):565-574.
    • (2015) Cancer Medicine , vol.4 , Issue.4 , pp. 565-574
    • Tiang, J.M.1    Butcher, N.J.2    Minchin, R.F.3
  • 45
    • 33846563409 scopus 로고    scopus 로고
    • Why most published research findings are false
    • e124
    • Ioannidis JPA. Why most published research findings are false. PLoS Medicine 2005; 2(8e124). doi:http://dx.doi.org/10.1371/journal.pmed.0020124.
    • (2005) PLoS Medicine , vol.2 , Issue.8
    • Ioannidis, J.P.A.1
  • 46
    • 1542784498 scopus 로고    scopus 로고
    • Variable selection via nonconcave penalized likelihood and its oracle properties
    • Fan J, Li R. Variable selection via nonconcave penalized likelihood and its oracle properties. Journal of the American Statistical Association 2001; 96(456):1348-1360.
    • (2001) Journal of the American Statistical Association , vol.96 , Issue.456 , pp. 1348-1360
    • Fan, J.1    Li, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.