-
1
-
-
0043203327
-
Multiple hypothesis testing in microarray experiments
-
Dudoit S, Shaffer J, Boldrick J. Multiple hypothesis testing in microarray experiments. Statistical Science 2003; 18(1):71-103.
-
(2003)
Statistical Science
, vol.18
, Issue.1
, pp. 71-103
-
-
Dudoit, S.1
Shaffer, J.2
Boldrick, J.3
-
2
-
-
78650153359
-
Simultaneous and selective inference: current successes and future challenges
-
Benjamini Y. Simultaneous and selective inference: current successes and future challenges. Biometrical Journal 2010; 52(6):708-721.
-
(2010)
Biometrical Journal
, vol.52
, Issue.6
, pp. 708-721
-
-
Benjamini, Y.1
-
3
-
-
55249117952
-
A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion
-
Farcomeni A. A review of modern multiple hypothesis testing, with particular attention to the false discovery proportion. Statistical Methods in Medical Research 2008; 17(4):347-388.
-
(2008)
Statistical Methods in Medical Research
, vol.17
, Issue.4
, pp. 347-388
-
-
Farcomeni, A.1
-
4
-
-
84873370664
-
Type I error rate control for testing many hypotheses: a survey with proofs
-
Roquain E. Type I error rate control for testing many hypotheses: a survey with proofs. Journal de la Societé Française de Statistique 2011; 153(2):3-38.
-
(2011)
Journal de la Societé Française de Statistique
, vol.153
, Issue.2
, pp. 3-38
-
-
Roquain, E.1
-
6
-
-
84887241280
-
Traditional multiplicity adjustment methods in clinical trials
-
Dmitrienko A, DAgostino R. Traditional multiplicity adjustment methods in clinical trials. Statistics in Medicine 2013; 32(29):5172-5218.
-
(2013)
Statistics in Medicine
, vol.32
, Issue.29
, pp. 5172-5218
-
-
Dmitrienko, A.1
Dagostino, R.2
-
7
-
-
0039669848
-
A remark on multiple comparison methods
-
Cox D. A remark on multiple comparison methods. Technometrics 1965; 7(2):223-224.
-
(1965)
Technometrics
, vol.7
, Issue.2
, pp. 223-224
-
-
Cox, D.1
-
8
-
-
14944365889
-
False discovery rate-adjusted multiple confidence intervals for selected parameters
-
Benjamini Y, Yekutieli D. False discovery rate-adjusted multiple confidence intervals for selected parameters. Journal of the American Statistical Association 2005; 100(469):71-81.
-
(2005)
Journal of the American Statistical Association
, vol.100
, Issue.469
, pp. 71-81
-
-
Benjamini, Y.1
Yekutieli, D.2
-
9
-
-
0035049158
-
Adjusting for multiple testing-when and how?
-
Bender R, Lange S. Adjusting for multiple testing-when and how? Journal of Clinical Epidemiology 2001; 54(4):343-349.
-
(2001)
Journal of Clinical Epidemiology
, vol.54
, Issue.4
, pp. 343-349
-
-
Bender, R.1
Lange, S.2
-
10
-
-
33846563409
-
Why most published research findings are false
-
Ioannidis J. Why most published research findings are false. PLoS Medicine 2005; 2(8):e124.
-
(2005)
PLoS Medicine
, vol.2
, Issue.8
-
-
Ioannidis, J.1
-
12
-
-
84864528337
-
Multiple testing for exploratory research
-
Goeman J, Solari A. Multiple testing for exploratory research. Statistical Science 2011; 26(4):584-597.
-
(2011)
Statistical Science
, vol.26
, Issue.4
, pp. 584-597
-
-
Goeman, J.1
Solari, A.2
-
13
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
Van deVijver MJ, He YD, van't Veer LJ, Dai H, Hart AAM, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C, Marton MJ, Parrish M, Atsma D, Witteveen A, Glas A, Delahaye L, van der Velde T, Bartelink H, Rodenhuis S, Rutgers ET, Friend SH, Bernards R. A gene-expression signature as a predictor of survival in breast cancer. New England Journal of Medicine 2002; 347(25):1999-2009.
-
(2002)
New England Journal of Medicine
, vol.347
, Issue.25
, pp. 1999-2009
-
-
Van deVijver, M.J.1
He, Y.D.2
van't Veer, L.J.3
Dai, H.4
Hart, A.A.M.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
Parrish, M.11
Atsma, D.12
Witteveen, A.13
Glas, A.14
Delahaye, L.15
van der Velde, T.16
Bartelink, H.17
Rodenhuis, S.18
Rutgers, E.T.19
Friend, S.H.20
Bernards, R.21
more..
-
14
-
-
0037142053
-
The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
-
for the Lymphoma/Leukemia Molecular Profiling Project.
-
Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, Fisher RI, Gascoyne RD, Muller-Hermelink HK, Smeland EB, Giltnane JM, Hurt EM, Zhao H, Averett L, Yang L, Wilson WH, Jaffe ES, Simon R, Klausner RD, Powell J, Duffey PL, Longo DL, Greiner TC, Weisenburger DD, Sanger WG, Dave BJ, Lynch JC, Vose J, Armitage JO, Montserrat E, López-Guillermo A, Grogan TM, Miller TP, LeBlanc M, Ott G, Kvaloy S, Delabie J, Holte H, Krajci P, Stokke T, Staudt LM, for the Lymphoma/Leukemia Molecular Profiling Project. The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. New England Journal of Medicine 2002; 346(25):1937-1947.
-
(2002)
New England Journal of Medicine
, vol.346
, Issue.25
, pp. 1937-1947
-
-
Rosenwald, A.1
Wright, G.2
Chan, W.C.3
Connors, J.M.4
Campo, E.5
Fisher, R.I.6
Gascoyne, R.D.7
Muller-Hermelink, H.K.8
Smeland, E.B.9
Giltnane, J.M.10
Hurt, E.M.11
Zhao, H.12
Averett, L.13
Yang, L.14
Wilson, W.H.15
Jaffe, E.S.16
Simon, R.17
Klausner, R.D.18
Powell, J.19
Duffey, P.L.20
Longo, D.L.21
Greiner, T.C.22
Weisenburger, D.D.23
Sanger, W.G.24
Dave, B.J.25
Lynch, J.C.26
Vose, J.27
Armitage, J.O.28
Montserrat, E.29
López-Guillermo, A.30
Grogan, T.M.31
Miller, T.P.32
LeBlanc, M.33
Ott, G.34
Kvaloy, S.35
Delabie, J.36
Holte, H.37
Krajci, P.38
Stokke, T.39
Staudt, L.M.40
more..
-
15
-
-
0032714352
-
Genomic control for association studies
-
Devlin B, Roeder K. Genomic control for association studies. Biometrics 1999; 55(4):997-1004.
-
(1999)
Biometrics
, vol.55
, Issue.4
, pp. 997-1004
-
-
Devlin, B.1
Roeder, K.2
-
16
-
-
84860698714
-
μtoss-multiple hypothesis testing in an open software system
-
Vol. 11, Berlin
-
Blanchard G, Dickhaus T, Hack N, Konietschke F, Rohmeyer K, Rosenblatt J, Scheer M, Werft W. μtoss-multiple hypothesis testing in an open software system. Journal of Machine Learning Research: Workshop and Conference Proceedings, Vol. 11, Berlin, 2010; 12-19.
-
(2010)
Journal of Machine Learning Research: Workshop and Conference Proceedings
, pp. 12-19
-
-
Blanchard, G.1
Dickhaus, T.2
Hack, N.3
Konietschke, F.4
Rohmeyer, K.5
Rosenblatt, J.6
Scheer, M.7
Werft, W.8
-
19
-
-
0040970668
-
On the false discovery rate and expected type I errors
-
Finner H, Roters M. On the false discovery rate and expected type I errors. Biometrical Journal 2001; 43(8):985-1005.
-
(2001)
Biometrical Journal
, vol.43
, Issue.8
, pp. 985-1005
-
-
Finner, H.1
Roters, M.2
-
20
-
-
0345822598
-
The positive false discovery rate: a Bayesian interpretation and the q-value
-
Storey J. The positive false discovery rate: a Bayesian interpretation and the q-value. The Annals of Statistics 2003; 31(6):2013-2035.
-
(2003)
The Annals of Statistics
, vol.31
, Issue.6
, pp. 2013-2035
-
-
Storey, J.1
-
22
-
-
0000072836
-
Tests of the overall hypothesis for arbitrary dependence structures
-
Hommel G. Tests of the overall hypothesis for arbitrary dependence structures. Biometrical Journal 1983; 25(5):423-430.
-
(1983)
Biometrical Journal
, vol.25
, Issue.5
, pp. 423-430
-
-
Hommel, G.1
-
23
-
-
45049087288
-
On control of the false discovery rate under no assumption of dependency
-
Guo W, BhaskaraRao M. On control of the false discovery rate under no assumption of dependency. Journal of Statistical Planning and Inference 2008; 138(10):3176-3188.
-
(2008)
Journal of Statistical Planning and Inference
, vol.138
, Issue.10
, pp. 3176-3188
-
-
Guo, W.1
BhaskaraRao, M.2
-
25
-
-
37249023746
-
Two-stage stepup procedures controlling FDR
-
Sarkar S. Two-stage stepup procedures controlling FDR. Journal of Statistical Planning and Inference 2008; 138(4):1072-1084.
-
(2008)
Journal of Statistical Planning and Inference
, vol.138
, Issue.4
, pp. 1072-1084
-
-
Sarkar, S.1
-
26
-
-
67649345185
-
An improved Bonferroni procedure for multiple tests of significance
-
Simes R. An improved Bonferroni procedure for multiple tests of significance. Biometrika 1986; 73(3):751-754.
-
(1986)
Biometrika
, vol.73
, Issue.3
, pp. 751-754
-
-
Simes, R.1
-
28
-
-
33750156296
-
Simes' procedure is 'valid on average'
-
Rødland E. Simes' procedure is 'valid on average'. Biometrika 2006; 93(3):742-746.
-
(2006)
Biometrika
, vol.93
, Issue.3
, pp. 742-746
-
-
Rødland, E.1
-
29
-
-
4043080005
-
FDR-controlling stepwise procedures and their false negatives rates
-
Sarkar S. FDR-controlling stepwise procedures and their false negatives rates. Journal of Statistical Planning and Inference 2004; 125(1):119-137.
-
(2004)
Journal of Statistical Planning and Inference
, vol.125
, Issue.1
, pp. 119-137
-
-
Sarkar, S.1
-
30
-
-
33847290868
-
FDR control by the BH procedure for two-sided correlated tests with implications to gene expression data analysis
-
Reiner-Benaim A. FDR control by the BH procedure for two-sided correlated tests with implications to gene expression data analysis. Biometrical Journal 2007; 49(1):107-126.
-
(2007)
Biometrical Journal
, vol.49
, Issue.1
, pp. 107-126
-
-
Reiner-Benaim, A.1
-
31
-
-
41749086199
-
Effects of dependence in high-dimensional multiple testing problems
-
Kim K, Van DeWiel M. Effects of dependence in high-dimensional multiple testing problems. BMC Bioinformatics 2008; 9(1):114.
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 114
-
-
Kim, K.1
Van DeWiel, M.2
-
32
-
-
57649217807
-
Comments on: control of the false discovery rate under dependence using the bootstrap and subsampling
-
Yekutieli D. Comments on: control of the false discovery rate under dependence using the bootstrap and subsampling. Test 2008; 17(3):458-460.
-
(2008)
Test
, vol.17
, Issue.3
, pp. 458-460
-
-
Yekutieli, D.1
-
33
-
-
0004173088
-
-
Wiley Online Library: New York
-
Good P. Permutation Tests. Wiley Online Library: New York, 2000.
-
(2000)
Permutation Tests
-
-
Good, P.1
-
35
-
-
54549090069
-
Multiple testing with minimal assumptions
-
Westfall PH, Troendle JF. Multiple testing with minimal assumptions. Biometrical Journal 2008; 50(5):745-755.
-
(2008)
Biometrical Journal
, vol.50
, Issue.5
, pp. 745-755
-
-
Westfall, P.H.1
Troendle, J.F.2
-
36
-
-
33748698241
-
To permute or not to permute
-
Huang Y, Xu H, Calian V, Hsu J. To permute or not to permute. Bioinformatics 2006; 22(18):2244-2248.
-
(2006)
Bioinformatics
, vol.22
, Issue.18
, pp. 2244-2248
-
-
Huang, Y.1
Xu, H.2
Calian, V.3
Hsu, J.4
-
37
-
-
78650083232
-
The sequential rejection principle of familywise error control
-
Goeman J, Solari A. The sequential rejection principle of familywise error control. The Annals of Statistics 2010; 38(6):3782-3810.
-
(2010)
The Annals of Statistics
, vol.38
, Issue.6
, pp. 3782-3810
-
-
Goeman, J.1
Solari, A.2
-
38
-
-
39649108872
-
Genome-wide significance for dense SNP and resequencing data
-
Hoggart C, Clark T, DeIorio M, Whittaker J, Balding D. Genome-wide significance for dense SNP and resequencing data. Genetic Epidemiology 2008; 32(2):179-185.
-
(2008)
Genetic Epidemiology
, vol.32
, Issue.2
, pp. 179-185
-
-
Hoggart, C.1
Clark, T.2
DeIorio, M.3
Whittaker, J.4
Balding, D.5
-
39
-
-
0032542897
-
What's wrong with Bonferroni adjustments
-
Perneger T. What's wrong with Bonferroni adjustments. British Medical Journal 1998; 316(7139):1236-1238.
-
(1998)
British Medical Journal
, vol.316
, Issue.7139
, pp. 1236-1238
-
-
Perneger, T.1
-
41
-
-
84947402121
-
Rectangular confidence regions for the means of multivariate normal distributions
-
Sidak Z. Rectangular confidence regions for the means of multivariate normal distributions. Journal of the American Statistical Association 1967; 62(318):626-633.
-
(1967)
Journal of the American Statistical Association
, vol.62
, Issue.318
, pp. 626-633
-
-
Sidak, Z.1
-
42
-
-
0025031812
-
No adjustments are needed for multiple comparisons
-
Rothman K. No adjustments are needed for multiple comparisons. Epidemiology 1990; 1(1):43-46.
-
(1990)
Epidemiology
, vol.1
, Issue.1
, pp. 43-46
-
-
Rothman, K.1
-
43
-
-
0345832338
-
A global test for groups of genes: testing association with a clinical outcome
-
Goeman J, Van DeGeer S, DeKort F, VanHouwelingen H. A global test for groups of genes: testing association with a clinical outcome. Bioinformatics 2004; 20(1):93-99.
-
(2004)
Bioinformatics
, vol.20
, Issue.1
, pp. 93-99
-
-
Goeman, J.1
Van DeGeer, S.2
DeKort, F.3
VanHouwelingen, H.4
-
44
-
-
37549057612
-
Globalancova: exploration and assessment of gene group effects
-
Hummel M, Meister R, Mansmann U. Globalancova: exploration and assessment of gene group effects. Bioinformatics 2008; 24(1):78-85.
-
(2008)
Bioinformatics
, vol.24
, Issue.1
, pp. 78-85
-
-
Hummel, M.1
Meister, R.2
Mansmann, U.3
-
45
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm S. A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics 1979; 6(2):65-70.
-
(1979)
Scandinavian Journal of Statistics
, vol.6
, Issue.2
, pp. 65-70
-
-
Holm, S.1
-
46
-
-
33645762226
-
A sharper Bonferroni procedure for multiple tests of significance
-
Hochberg Y. A sharper Bonferroni procedure for multiple tests of significance. Biometrika 1988; 75(4):800-802.
-
(1988)
Biometrika
, vol.75
, Issue.4
, pp. 800-802
-
-
Hochberg, Y.1
-
47
-
-
0001669952
-
A stagewise rejective multiple test procedure based on a modified Bonferroni test
-
Hommel G. A stagewise rejective multiple test procedure based on a modified Bonferroni test. Biometrika 1988; 75(2):383-386.
-
(1988)
Biometrika
, vol.75
, Issue.2
, pp. 383-386
-
-
Hommel, G.1
-
48
-
-
0001669953
-
A comparison of two modified Bonferroni procedures
-
Hommel G. A comparison of two modified Bonferroni procedures. Biometrika 1989; 76(3):624-625.
-
(1989)
Biometrika
, vol.76
, Issue.3
, pp. 624-625
-
-
Hommel, G.1
-
49
-
-
0017146303
-
On closed testing procedures with special reference to ordered analysis of variance
-
Marcus R, Peritz E, Gabriel K. On closed testing procedures with special reference to ordered analysis of variance. Biometrika 1976; 63(3):655-660.
-
(1976)
Biometrika
, vol.63
, Issue.3
, pp. 655-660
-
-
Marcus, R.1
Peritz, E.2
Gabriel, K.3
-
51
-
-
84885060864
-
Asymptotic optimality of the Westfall-Young permutation procedure for multiple testing under dependence
-
Meinshausen N, Maathuis M, Bühlmann P. Asymptotic optimality of the Westfall-Young permutation procedure for multiple testing under dependence. The Annals of Statistics 2012; 39(6):3369-3391.
-
(2012)
The Annals of Statistics
, vol.39
, Issue.6
, pp. 3369-3391
-
-
Meinshausen, N.1
Maathuis, M.2
Bühlmann, P.3
-
52
-
-
0041530047
-
Resampling-based multiple testing for microarray data analysis
-
Ge Y, Dudoit S, Speed T. Resampling-based multiple testing for microarray data analysis. Test 2003; 12(1):1-77.
-
(2003)
Test
, vol.12
, Issue.1
, pp. 1-77
-
-
Ge, Y.1
Dudoit, S.2
Speed, T.3
-
54
-
-
78149276744
-
Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawn
-
Phipson B, Smyth G. Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawn. Statistical Applications in Genetics and Molecular Biology 2010; 9(1):39.
-
(2010)
Statistical Applications in Genetics and Molecular Biology
, vol.9
, Issue.1
, pp. 39
-
-
Phipson, B.1
Smyth, G.2
-
55
-
-
0035733108
-
The control of the false discovery rate in multiple testing under dependency
-
Benjamini Y, Yekutieli D. The control of the false discovery rate in multiple testing under dependency. Annals of Statistics 2001; 29(4):1165-1188.
-
(2001)
Annals of Statistics
, vol.29
, Issue.4
, pp. 1165-1188
-
-
Benjamini, Y.1
Yekutieli, D.2
-
56
-
-
0034370950
-
On the adaptive control of the false discovery rate in multiple testing with independent statistics
-
Benjamini Y, Hochberg Y. On the adaptive control of the false discovery rate in multiple testing with independent statistics. Journal of Educational and Behavioral Statistics 2000; 25(1):60-83.
-
(2000)
Journal of Educational and Behavioral Statistics
, vol.25
, Issue.1
, pp. 60-83
-
-
Benjamini, Y.1
Hochberg, Y.2
-
57
-
-
33746197428
-
Adaptive linear step-up procedures that control the false discovery rate
-
Benjamini Y, Krieger A, Yekutieli D. Adaptive linear step-up procedures that control the false discovery rate. Biometrika 2006; 93(3):491-507.
-
(2006)
Biometrika
, vol.93
, Issue.3
, pp. 491-507
-
-
Benjamini, Y.1
Krieger, A.2
Yekutieli, D.3
-
58
-
-
75249099812
-
Adaptive false discovery rate control under independence and dependence
-
Blanchard G, Roquain E. Adaptive false discovery rate control under independence and dependence. The Journal of Machine Learning Research 2009; 10: 2837-2871.
-
(2009)
The Journal of Machine Learning Research
, vol.10
, pp. 2837-2871
-
-
Blanchard, G.1
Roquain, E.2
-
61
-
-
0033472709
-
Resampling-based false discovery rate controlling multiple test procedures for correlated test statistics
-
Yekutieli D, Benjamini Y. Resampling-based false discovery rate controlling multiple test procedures for correlated test statistics. Journal of Statistical Planning and Inference 1999; 82(1-2):171-196.
-
(1999)
Journal of Statistical Planning and Inference
, vol.82
, Issue.1-2
, pp. 171-196
-
-
Yekutieli, D.1
Benjamini, Y.2
-
62
-
-
57649240445
-
Control of the false discovery rate under dependence using the bootstrap and subsampling
-
Romano J, Shaikh A, Wolf M. Control of the false discovery rate under dependence using the bootstrap and subsampling. Test 2008; 17(3):417-442.
-
(2008)
Test
, vol.17
, Issue.3
, pp. 417-442
-
-
Romano, J.1
Shaikh, A.2
Wolf, M.3
-
63
-
-
0001497726
-
Stepwise normal theory multiple test procedures controlling the false discovery rate
-
Troendle J. Stepwise normal theory multiple test procedures controlling the false discovery rate. Journal of Statistical Planning and Inference 2000; 84(1-2):139-158.
-
(2000)
Journal of Statistical Planning and Inference
, vol.84
, Issue.1-2
, pp. 139-158
-
-
Troendle, J.1
-
64
-
-
55349093320
-
Some step-down procedures controlling the false discovery rate under dependence
-
Ge Y, Sealfon S, Speed T. Some step-down procedures controlling the false discovery rate under dependence. Statistica Sinica 2008; 18(3):881-904.
-
(2008)
Statistica Sinica
, vol.18
, Issue.3
, pp. 881-904
-
-
Ge, Y.1
Sealfon, S.2
Speed, T.3
-
65
-
-
3042552023
-
Controlling the number of false discoveries: application to high-dimensional genomic data
-
Korn E, Troendle J, McShane L, Simon R. Controlling the number of false discoveries: application to high-dimensional genomic data. Journal of Statistical Planning and Inference 2004; 124(2):379-398.
-
(2004)
Journal of Statistical Planning and Inference
, vol.124
, Issue.2
, pp. 379-398
-
-
Korn, E.1
Troendle, J.2
McShane, L.3
Simon, R.4
-
66
-
-
57649210691
-
Comments on: control of the false discovery rate under dependence using the bootstrap and subsampling
-
Troendle J. Comments on: control of the false discovery rate under dependence using the bootstrap and subsampling. Test 2008; 17(3):456-457.
-
(2008)
Test
, vol.17
, Issue.3
, pp. 456-457
-
-
Troendle, J.1
-
67
-
-
39149099505
-
Multiple testing on the directed acyclic graph of gene ontology
-
Goeman J, Mansmann U. Multiple testing on the directed acyclic graph of gene ontology. Bioinformatics 2008; 24(4):537-544.
-
(2008)
Bioinformatics
, vol.24
, Issue.4
, pp. 537-544
-
-
Goeman, J.1
Mansmann, U.2
-
70
-
-
1142273091
-
Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach
-
Storey J, Taylor J, Siegmund D. Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach. Journal of the Royal Statistical Society: Series B (Statistical Methodology) 2004; 66(1):187-205.
-
(2004)
Journal of the Royal Statistical Society: Series B (Statistical Methodology)
, vol.66
, Issue.1
, pp. 187-205
-
-
Storey, J.1
Taylor, J.2
Siegmund, D.3
-
71
-
-
79952159600
-
The effect of correlation in false discovery rate estimation
-
Schwartzman A, Lin X. The effect of correlation in false discovery rate estimation. Biometrika 2011; 98(1):199-214.
-
(2011)
Biometrika
, vol.98
, Issue.1
, pp. 199-214
-
-
Schwartzman, A.1
Lin, X.2
-
72
-
-
4444294164
-
Improving false discovery rate estimation
-
Pounds S, Cheng C. Improving false discovery rate estimation. Bioinformatics 2004; 20(11):1737-1745.
-
(2004)
Bioinformatics
, vol.20
, Issue.11
, pp. 1737-1745
-
-
Pounds, S.1
Cheng, C.2
-
76
-
-
1542784653
-
Empirical Bayes analysis of a microarray experiment
-
Efron B, Tibshirani R, Storey J, Tusher V. Empirical Bayes analysis of a microarray experiment. Journal of the American Statistical Association 2001; 96(456):1151-1160.
-
(2001)
Journal of the American Statistical Association
, vol.96
, Issue.456
, pp. 1151-1160
-
-
Efron, B.1
Tibshirani, R.2
Storey, J.3
Tusher, V.4
-
77
-
-
47749152434
-
Microarrays, empirical Bayes and the two-groups model
-
Efron B. Microarrays, empirical Bayes and the two-groups model. Statistical Science 2008; 23: 1-22.
-
(2008)
Statistical Science
, vol.23
, pp. 1-22
-
-
Efron, B.1
-
78
-
-
49749116817
-
Comment: microarrays, empirical Bayes and the two-groups model
-
Morris C. Comment: microarrays, empirical Bayes and the two-groups model. Statistical Science 2008; 23: 34-40.
-
(2008)
Statistical Science
, vol.23
, pp. 34-40
-
-
Morris, C.1
-
79
-
-
28244483283
-
Correlation between gene expression levels and limitations of the empirical Bayes methodology in microarray data analysis
-
Qiu X, Klebanov L, Yakovlev A. Correlation between gene expression levels and limitations of the empirical Bayes methodology in microarray data analysis. Statistical Applications in Genetics and Molecular Biology 2005; 4(1):34.
-
(2005)
Statistical Applications in Genetics and Molecular Biology
, vol.4
, Issue.1
, pp. 34
-
-
Qiu, X.1
Klebanov, L.2
Yakovlev, A.3
-
80
-
-
33845351772
-
Estimation of false discovery proportion under general dependence
-
Pawitan Y, Calza S, Ploner A. Estimation of false discovery proportion under general dependence. Bioinformatics 2006; 22(24):3025-3031.
-
(2006)
Bioinformatics
, vol.22
, Issue.24
, pp. 3025-3031
-
-
Pawitan, Y.1
Calza, S.2
Ploner, A.3
-
81
-
-
33947216221
-
Correlation and large-scale simultaneous significance testing
-
Efron B. Correlation and large-scale simultaneous significance testing. Journal of the American Statistical Association 2007; 102(477):93-103.
-
(2007)
Journal of the American Statistical Association
, vol.102
, Issue.477
, pp. 93-103
-
-
Efron, B.1
-
82
-
-
77951948076
-
Correlated z-values and the accuracy of large-scale statistical estimates
-
Efron B. Correlated z-values and the accuracy of large-scale statistical estimates. Journal of the American Statistical Association 2010; 105(491):1042-1055.
-
(2010)
Journal of the American Statistical Association
, vol.105
, Issue.491
, pp. 1042-1055
-
-
Efron, B.1
-
83
-
-
33745303832
-
False discovery control for multiple tests of association under general dependence
-
Meinshausen N. False discovery control for multiple tests of association under general dependence. Scandinavian Journal of Statistics 2006; 33(2):227-237.
-
(2006)
Scandinavian Journal of Statistics
, vol.33
, Issue.2
, pp. 227-237
-
-
Meinshausen, N.1
-
85
-
-
84861197050
-
Estimating the number of true discoveries in genome-wide association studies
-
Lee W, Gusnanto A, Salim A, Magnusson P, Sim X, Tai E, Pawitan Y. Estimating the number of true discoveries in genome-wide association studies. Statistics in Medicine 2011; 31(11-12):1177-1189.
-
(2011)
Statistics in Medicine
, vol.31
, Issue.11-12
, pp. 1177-1189
-
-
Lee, W.1
Gusnanto, A.2
Salim, A.3
Magnusson, P.4
Sim, X.5
Tai, E.6
Pawitan, Y.7
-
86
-
-
22544447295
-
Tests for differentiation in gene expression using a data-driven order or weights for hypotheses
-
Hommel G, Kropf S. Tests for differentiation in gene expression using a data-driven order or weights for hypotheses. Biometrical Journal 2005; 47(4):554-562.
-
(2005)
Biometrical Journal
, vol.47
, Issue.4
, pp. 554-562
-
-
Hommel, G.1
Kropf, S.2
-
87
-
-
34547875368
-
FDR- and FWE-controlling methods using data-driven weights
-
Finos L, Salmaso L. FDR- and FWE-controlling methods using data-driven weights. Journal of Statistical Planning and Inference 2007; 137(12):3859-3870.
-
(2007)
Journal of Statistical Planning and Inference
, vol.137
, Issue.12
, pp. 3859-3870
-
-
Finos, L.1
Salmaso, L.2
-
88
-
-
36448929060
-
I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data
-
Talloen W, Clevert DA, Hochreiter S, Amaratunga D, Bijnens L, Kass S, Göhlmann HW. I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data. Bioinformatics 2007; 23(21):2897-2902.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2897-2902
-
-
Talloen, W.1
Clevert, D.A.2
Hochreiter, S.3
Amaratunga, D.4
Bijnens, L.5
Kass, S.6
Göhlmann, H.W.7
-
89
-
-
63449142392
-
Filtering for increased power for microarray data analysis
-
Hackstadt A, Hess A. Filtering for increased power for microarray data analysis. BMC Bioinformatics 2009; 10(1):11.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.1
, pp. 11
-
-
Hackstadt, A.1
Hess, A.2
-
91
-
-
77956479195
-
Filtering, FDR and power
-
van Iterson M, Boer J, Menezes R. Filtering, FDR and power. BMC Bioinformatics 2010; 11(1):450.
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
, pp. 450
-
-
van Iterson, M.1
Boer, J.2
Menezes, R.3
-
92
-
-
44849141742
-
Hierarchical testing of variable importance
-
Meinshausen N. Hierarchical testing of variable importance. Biometrika 2008; 95(2):265-278.
-
(2008)
Biometrika
, vol.95
, Issue.2
, pp. 265-278
-
-
Meinshausen, N.1
-
93
-
-
42349100063
-
Hierarchical false discovery rate-controlling methodology
-
Yekutieli D. Hierarchical false discovery rate-controlling methodology. Journal of the American Statistical Association 2008; 103(481):309-316.
-
(2008)
Journal of the American Statistical Association
, vol.103
, Issue.481
, pp. 309-316
-
-
Yekutieli, D.1
-
94
-
-
63449125034
-
High-dimensional data analysis: selection of variables, data compression and graphics-application to gene expression
-
Läuter J, Horn F, Rosołowski M, Glimm E. High-dimensional data analysis: selection of variables, data compression and graphics-application to gene expression. Biometrical Journal 2009; 51(2):235-251.
-
(2009)
Biometrical Journal
, vol.51
, Issue.2
, pp. 235-251
-
-
Läuter, J.1
Horn, F.2
Rosołowski, M.3
Glimm, E.4
-
97
-
-
74849125933
-
Gene identification using true discovery rate degree of association sets and estimates corrected for regression to the mean
-
Crager M. Gene identification using true discovery rate degree of association sets and estimates corrected for regression to the mean. Statistics in Medicine 2010; 29(1):33-45.
-
(2010)
Statistics in Medicine
, vol.29
, Issue.1
, pp. 33-45
-
-
Crager, M.1
-
99
-
-
75649147432
-
Correcting 'winner's curse' in odds ratios from genomewide association findings for major complex human diseases
-
Zhong H, Prentice R. Correcting 'winner's curse' in odds ratios from genomewide association findings for major complex human diseases. Genetic Epidemiology 2010; 34(1):78-91.
-
(2010)
Genetic Epidemiology
, vol.34
, Issue.1
, pp. 78-91
-
-
Zhong, H.1
Prentice, R.2
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