Genetic dissection of ICP-detected nutrient accumulation in the whole seed of common bean (Phaseolus vulgaris L.)

Frontiers in Plant Science

Volumn 7, Issue MAR2016, 2016, Pages

  Blair, Matthew Wohlgemuth ^a   Wu, Xingbo ^a   Bhandari, Devendra ^a   Astudillo, Carolina ^b  

^a TENNESSEE STATE UNIVERSITY   (United States)

^b Bayer Crops Research   (United States)

Author keywords

Dry bean grain; Inductively coupled plasma spectroscopy; Mineral and non mineral elements; Pulse legume; Quantitative trait loci; Seed nutrient concentration

Indexed keywords

EID: 84960125426     PISSN: None     EISSN: 1664462X     Source Type: Journal    
DOI: 10.3389/fpls.2016.00219     Document Type: Article

References (65)

1. Ammann, A. A. (2007). Inductively coupled plasma mass spectrometry (ICP MS): a versatile tool. J. Mass Spectrom. 42, 419-427. doi: 10.1002/jms.1206
2. Asfaw, A., and Blair, M. W. (2012). Quantitative trait loci for rooting pattern traits of common beans grown under drought stress versus non-stress conditions. Mol. Breed.30, 681-695. doi: 10.1007/s11032-011-9654-y
3. Bass, J. K., and Chan, G. M. (2006). Calcium nutrition and metabolism during infancy.Nutrition 22, 1057-1066. doi: 10.1016/j.nut.2006.05.014
4. Basten, C. J. Weir, B. S., and Zeng, Z. B. (2001). QTL Cartographer: A Reference Manual and Tutorial for QTL Mapping. Raleigh, NC: Program in Statistical Genetics, Bioinformatics Research Center, Department of Statistics, North Carolina State University.
5. Blair, M. W. (2013a). Mineral biofortification strategies for food staples: the example of common bean. J. Agric. Food Chem. 61, 8287-8294. doi: 10.1021/jf400774y
6. Blair, M. W. (2013b). "Breeding approaches to increasing nutrient-use efficiency," inImproving Water and Nutrient-Use Efficiency in Food Production Systems, eds Z. Rengel and Z. Rengel (Hoboken, NJ: Wiley Online Library Press), 161-175.
7. Blair, M. W., Astudillo, C., Grusak, M. A., Graham, R., and Beebe, S. E. (2009a). Inheritance of seed iron and zinc concentrations in common bean (Phaseolus vulgarisL.). Mol. Breed. 23, 197-207. doi: 10.1007/s11032-008-9225-z
8. Blair, M. W., Astudillo, C., Rengifo, J., Beebe, S. E., and Graham, R. (2011). QTL analyses for seed iron and zinc concentrations in an intra-genepool population of Andean common beans (Phaseolus vulgaris L.). Theor. Appl. Genet. 122, 511-521. doi: 10.1007/s00122-010-1465-8
9. Blair, M. W., Buendia, H. F., Giraldo, M. C., Métais, I., and Peltier, D. (2008). Characterization of AT-rich microsatellites in common bean (Phaseolus vulgaris L.).Theor. Appl. Genet. 118, 91-103. doi: 10.1007/s00122-008-0879-z
10. Blair, M. W., Herrera, A. L., Sandoval, T. A., Caldas, G. V., Filleppi, M., and Sparvoli, F. (2012). Inheritance of seed phytate and phosphorus levels in common bean (Phaseolus vulgaris L.) and association with newly-mapped candidate genes. Mol. Breed. 30, 1265-1277. doi: 10.1007/s11032-012-9713-z
11. Blair, M. W., Izquierdo, P., Astudillo, C., and Grusak, M. A. (2013). A legume biofortification quandary: variability and genetic control of seed coat micronutrient accumulation in common beans. Front. Plant Sci. 4:275. doi: 10.3389/fpls.2013.00275
12. Blair, M. W., Knewtson, S. J. B., Astudillo, C., Li, C.-M., Fernandez, A. C., and Grusak, M. A. (2010a). Variation and inheritance of iron reductase activity in the roots of common bean (Phaseolus vulgaris L.) and association with seed iron accumulation QTL. BMC Plant Biol. 10:215. doi: 10.1186/1471-2229-10-215
13. Blair, M. W., Medina, J. I., Astudillo, C., Rengifo, J., Beebe, S. E., Machado, G., et al. (2010b). QTL for seed iron and zinc concentration and content in a Mesoamerican common bean (Phaseolus vulgaris L.) population. Theor. Appl. Genet. 121, 1059-1070. doi: 10.1007/s00122-010-1371-0
14. Blair, M. W., Pedraza, F., Buendia, H. F., Gaitán-Solís, E., Beebe, S. E., Gepts, P., et al. (2003). Development of a genome-wide anchored microsatellite map for common bean (Phaseolus vulgaris L.). Theor. Appl. Genet. 107.8, 1362-1374. doi: 10.1007/s00122-003-1398-6
15. Blair, M. W., Sandoval, T. A., Caldas, G. V., Beebe, S. E., and Páez, M. I. (2009b). Quantitative trait locus analysis of seed phosphorus and seed phytate content in a recombinant inbred line population of common bean. Crop Sci. 49, 237-246. doi: 10.2135/cropsci2008.05.0246
16. Bohra, A., Sahrawat, K. L., Kumar, S., Joshi, R., Parihar, A. K., Singh, U., et al. (2015). Genetics-and genomics-based interventions for nutritional enhancement of grain legume crops: status and outlook. J. Appl. Genet. 56, 151-161. doi: 10.1007/s13353-014-0268-z
17. Bouis, H. E. (2003). Micronutrient fortification of plants through plant breeding: can it improve nutrition in man at low cost? Proc. Nutr. Soc. 62, 403-411. doi: 10.1079/PNS2003262
18. Branca, F., and Ferrari, M. (2002). Impact of micronutrient deficiencies on growth: the stunting syndrome. Ann. Nutr. Metab. 46, 8-17. doi: 10.1159/000066397
19. Buring, J. E., and Gaziano, J. M. (1997). "Antioxidant vitamins and cardiovascular disease," in Preventive Nutrition, eds A. Bendich and R. J. Deckelbaum (Totowa, NJ: Humana press), 171-180.
20. Caballero, B. (2002). Global patterns of child health: the role of nutrition. Ann. Nutr. Metab. 46, 3-7. doi: 10.1159/000066400
21. Cakmak, I., Pfeiffer, W. H., and McClafferty, B. (2010). Review: biofortification of durum wheat with zinc and iron. Cereal Chem. 87, 10-20. doi: 10.1094/CCHEM-87-1-0010
22. Caruso, J. A., Sutton, K. L., and Ackley, K. L. (2000). Elemental Speciation, Comprehensive Analytical Chemistry. Amsterdam: Elsevier Science, 32.
23. Chen, J. R., Weng, C. N., Ho, T. Y., Cheng, I. C., and Lai, S. S. (2000). Identification of the copper-zinc superoxide dismutase activity in Mycoplasma hyopneumoniae. Vet. Microbiol. 73, 301-310. doi: 10.1016/S0378-1135(99)00170-4
24. Cheng, P., Holdsworth, W., Ma, Y., Coyne, C. J., Mazourek, M., Grusak, M. A., et al. (2015). Association mapping of agronomic and quality traits in USDA pea single-plant collection. Mol. Breed. 35, 1-13. doi: 10.1007/s11032-015-0277-6
25. Cheniae, G. M., and Martin, I. F. (1968). Site of manganese function in photosynthesis.Biochim. Biophys. Acta (BBA)-Bioenergetics 153, 819-837. doi: 10.1016/0005-2728(68)90009-1
26. Churchill, G. A., and Doerge, R. W. (1994). Empirical threshold values for quantitative trait mapping. Genetics 138, 963-971.
27. Clarkson, B. R., and Clarkson, B. D. (1995). Recent vegetation changes on mount tarawera, rotorua, new zealand. N. Z. J. Bot. 33, 339-354. doi: 10.1080/0028825X.1995.10412961
28. Cubadda, F., Andrea, A., Testoni, A., and Fabio, F. (2002). Multielemental analysis of food and agricultural matrixes by inductively coupled plasma-mass spectrometry. J. AOAC Int. 85, 113-121.
29. Francki, M., Klein, M. A., and Grusak, M. A. (2009). Identification of nutrient and physical seed trait QTL in the model legume Lotus japonicus. Genome 52, 677-691. doi: 10.1139/g09-039
30. Frossard, E., Bucher, M., Mächler, F., Mozafar, A., and Hurrell, R. (2000). Potential for increasing the content and bioavailability of Fe, Zn and Ca in plants for human nutrition. J. Sci. Food Agric. 80, 861-879. doi: 10.1002/(SICI)1097-0010(20000515)80:7<861::AID-JSFA601>3.3.CO;2-G
31. Gaetke, L. M., and Chow, C. K. (2003). Copper toxicity, oxidative stress, and antioxidant nutrients. Toxicology 189, 147-163. doi: 10.1016/S0300-483X(03)00159-8
32. Garcia, J. S., de Magalhaes, C. S., and Arruda, M. A. Z. (2006). Trends in metal-binding and metalloprotein analysis. Talanta 69, 1-15. doi: 10.1016/j.talanta.2005.08.041
33. Grusak, M. A., and DellaPenna, D. (1999). Improving the nutrient composition of plants to enhance human nutrition and health 1. Annu. Rev. Plant Biol. 50, 133-161. doi: 10.1146/annurev.arplant.50.1.133
34. Hayes, J. E., Pallotta, M., Garcia, M., Öz, M. T., Rongala, J., and Sutton, T. (2015). Diversity in boron toxicity tolerance of australian barley (Hordeum vulgare L.) genotypes. BMC Plant Biol. 15:231. doi: 10.1186/s12870-015-0607-1
35. Hirner, A. V., and Emons, H. (2004). Organic Metal and Metalloid Species in the Environment: Analysis, Distribution, Processes and Toxicological Evaluation. Berlin: Springer Science & Business Media.
36. Houk, R. S., Fassel, V. A., Flesch, G. D., Svec, H. J., Gray, A. L., and Taylor, C. E. (1980). Inductively coupled argon plasma as an ion source for mass spectrometric determination of trace elements. Anal. Chem. 52, 2283-2289. doi: 10.1021/ac50064a012
37. Iqbal, A., Khalil, I. A., Ateeq, N., and Khan, M. S. (2006). Nutritional quality of important food legumes. Food Chem. 97, 331-335. doi: 10.1016/j.foodchem.2005.05.011
38. Jeejeebhoy, K. (2009). Zinc: an essential trace element for parenteral nutrition.Gastroenterology 137, S7-S12. doi: 10.1053/j.gastro.2009.08.014
39. Lachas, H., Richaud, R., Herod, A. A., Dugwell, D. R., and Kandiyoti, R. (2000). Determination of trace elements by inductively coupled plasma mass spectrometry of biomass and fuel oil reference materials using milligram sample sizes. Rapid Commun. Mass Spectrom. 14, 335-343. doi: 10.1002/(SICI)1097-0231(20000315)14:5<335::AID-RCM854>3.0.CO;2-0
40. Lahner, B., Gong, J., Mahmoudian, M., Smith, E. L., Abid, K. B., Rogers, E. E., et al. (2003). Genomic scale profiling of nutrient and trace elements in Arabidopsis thaliana.Nat. Biotechnol. 21, 1215-1221. doi: 10.1038/nbt865
41. Łobiński, R., Schaumlöffel, D., and Szpunar, J. (2006). Mass spectrometry in bioinorganic analytical chemistry. Mass Spectrom. Rev. 25, 255-289. doi: 10.1002/mas.20069
42. Martínez, F., Uribe, A., Espinosa-García, M. T., Flores-Herrera, O., García-Pérez, C., and Milán, R. (2002a). Calcium modulates the ATP and ADP hydrolysis in human placental mitochondria. Int. J. Biochem. Cell Biol. 34, 992-1003. doi: 10.1016/S1357-2725(02)00020-1
43. Martínez, F., Uribe, A., Milán, R., Espinosa-García, M. T., García-Pérez, C., and Flores-Herrera, O. (2002b). Differential effects of magnesium on the hydrolysis of ADP and ATP in human term placenta: effect of substrates and potassium. Int. J. Biochem. Cell Biol. 34, 1004-1016. doi: 10.1016/S1357-2725(02)00021-3
44. Métayer, S., Seiliez, I., Collin, A., Duchêne, S., Mercier, Y., Geraert, P.-A., et al. (2008). Mechanisms through which sulfur amino acids control protein metabolism and oxidative status. J. Nutr. Biochem. 19, 207-215. doi: 10.1016/j.jnutbio.2007.05.006
45. Montaser, A. (1998). Inductively Coupled Plasma Mass Spectrometry. New York, NY: John Wiley & Sons.
46. Moraghan, J. T., Padilla, J., Etchevers, J. D., Grafton, K., and Acosta-Gallegos, J. A. (2002). Iron accumulation in seed of common bean. Plant Soil 246, 175-183. doi: 10.1023/A:1020616026728
47. Muto, H., Abe, T., Takizawa, Y., Kawabata, K., Yamaguchi, K., and Saitoh, K. (1994). Simultaneous multielemental analysis of daily food samples by inductively coupled plasma mass spectrometry. Sci. Total Environ. 144, 231-239. doi: 10.1016/0048-9697(94)90441-3
48. Nelms, S. (ed.) (2005). Inductively Coupled Plasma Mass Spectrometry Handbook.Oxford: Blackwell Publishing, 1.
49. Nielsen, F. H. (2014). Update on human health effects of boron. J. Trace Elem. Med. Biol. 28, 383-387. doi: 10.1016/j.jtemb.2014.06.023
50. Nordin, B. E. C. (1997). Calcium and osteoporosis. Nutrition 13, 664-686. doi: 10.1016/S0899-9007(97)83011-0
51. Pennington, J. A. T., Schoen, S. A., Salmon, G. D., Young, B., Johnson, R. D., and Marts, R. W. (1995a). Composition of core foods of the us food supply, 1982-1991 iii. Copper, manganese, selenium, and iodine. J. Food Compos. Anal. 8, 171-217. doi: 10.1006/jfca.1995.1014
52. Pennington, J. A. T., Schoen, S. A., Salmon, G. D., Young, B., Johnson, R. D., and Marts, R. W. (1995b). Composition of core foods of the us food supply, 1982-1991 ii. Calcium, magnesium, iron, and zinc. J. Food Compos. Anal. 8, 129-169. doi: 10.1006/jfca.1995.1013
53. Pennington, J. A. T., Schoen, S. A., Salmon, G. D., Young, B., Johnson, R. D., and Marts, R. W. (1995c). Composition of core foods of the us food supply, 1982-1991 i. Sodium, phosphorus, and potassium. J. Food Compos. Anal. 8, 91-128. doi: 10.1006/jfca.1995.1012
54. Pham-Huy, L. A., He, H., and Pham-Huy, C. (2008). Free radicals, antioxidants in disease and health. Int. J. Biomed. Sci. 4, 89-96.
55. Phan-Thien, K.-Y., Wright, G. C., and Lee, N. A. (2012). Inductively coupled plasma-mass spectrometry (ICP-MS) and-optical emission spectroscopy (ICP-OES) for determination of essential minerals in closed acid digestates of peanuts (Arachis hypogaea L.). Food Chem. 134, 453-460. doi: 10.1016/j.foodchem.2012.02.095
56. Rea, P. A. (2003). Ion genomics. Nat. Biotechnol. 21, 1149-1151. doi: 10.1038/nbt1003-1149
57. Rizzoli, R., Boonen, S., Brandi, M. L., Burlet, N., Delmas, P., and Reginster, J. Y. (2008). The role of calcium and vitamin D in the management of osteoporosis. Bone 42, 246-249. doi: 10.1016/j.bone.2007.10.005
58. Sankaran, R. P., Huguet, T., and Grusak, M. A. (2009). Identification of QTL affecting seed mineral concentrations and content in the model legume Medicago truncatula.Theor. Appl. Genet. 119, 241-253. doi: 10.1007/s00122-009-1033-2
59. Steinmetz, K. A., and Potter, J. D. (1996). Vegetables, fruit, and cancer prevention: a review. J. Am. Diet. Assoc. 96, 1027-1039. doi: 10.1016/S0002-8223(96)00273-8
60. Vreugdenhil, D., Aarts, M. G. M., Koornneef, M., Nelissen, H., and Ernst, W. H. O. (2004). Natural variation and QTL analysis for cationic mineral content in seeds ofArabidopsis thaliana. Plant Cell Environ. 27, 828-839. doi: 10.1111/j.1365-3040.2004.01189.x
61. Wang, T. L., Domoney, C., Hedley, C. L., Casey, R., and Grusak, M. A. (2003). Can we improve the nutritional quality of legume seeds? Plant Physiol. 131, 886-891. doi: 10.1104/pp.102.017665
62. Welch, R. M. (2002). Breeding strategies for biofortified staple plant foods to reduce micronutrient malnutrition globally. J. Nutr. 132, 495S-499S.
63. Welch, R. M., and Graham, R. D. (1999). A new paradigm for world agriculture: meeting human needs: productive, sustainable, nutritious. Field Crops Res. 60, 1-10. doi: 10.1016/S0378-4290(98)00129-4
64. Welch, R. M., and Graham, R. D. (2004). Breeding for micronutrients in staple food crops from a human nutrition perspective. J. Exp. Bot. 55, 353-364. doi: 10.1093/jxb/erh064
65. White, P. J., and Broadley, M. R. (2009). Biofortification of crops with seven mineral elements often lacking in human diets-iron, zinc, copper, calcium, magnesium, selenium and iodine. New Phytol. 182, 49-84. doi: 10.1111/j.1469-8137.2008.02738.x