-
1
-
-
84856566482
-
Minimal cut sets in a metabolic network are elementary modes in a dual network
-
Ballerstein K, et al. (2012). Minimal cut sets in a metabolic network are elementary modes in a dual network. Bioinformatics. 28, 381-387.
-
(2012)
Bioinformatics
, vol.28
, pp. 381-387
-
-
Ballerstein, K.1
-
2
-
-
43649083387
-
Structural robustness of metabolic networks with respect to multiple knockouts
-
Behre J, et al. (2008). Structural robustness of metabolic networks with respect to multiple knockouts. J. Theor. Biol., 252, 433-441.
-
(2008)
J. Theor. Biol
, vol.252
, pp. 433-441
-
-
Behre, J.1
-
3
-
-
84960170330
-
-
Combinatorics of Finite Sets 1st edn. North Holland, Amsterdam
-
Berge C. (1989). Hypergraphs, Volume 45: Combinatorics of Finite Sets. 1st edn. North Holland, Amsterdam
-
(1989)
Hypergraphs
, vol.45
-
-
Berge, C.1
-
4
-
-
84870821244
-
Antivirulence genes: Insights into pathogen evolution through gene loss
-
Bliven K.A, and Maurelli A.T. (2012). Antivirulence genes: insights into pathogen evolution through gene loss. Infect. Immun., 80, 4061-4070.
-
(2012)
Infect. Immun
, vol.80
, pp. 4061-4070
-
-
Bliven, K.A.1
Maurelli, A.T.2
-
5
-
-
75849164426
-
Computing the shortest elementary flux modes in genome-scale metabolic networks
-
De Figueiredo L.F, et al. (2009). Computing the shortest elementary flux modes in genome-scale metabolic networks. Bioinformatics. 25, 3158-3165.
-
(2009)
Bioinformatics
, vol.25
, pp. 3158-3165
-
-
De Figueiredo, L.F.1
-
6
-
-
84924388543
-
Metabolomics integrated elementary flux mode analysis in large metabolic networks
-
Gerstl M.P, et al. (2015). Metabolomics integrated elementary flux mode analysis in large metabolic networks. Sci. Rep., 5, 8930.
-
(2015)
Sci. Rep
, vol.5
, pp. 8930
-
-
Gerstl, M.P.1
-
7
-
-
84855993154
-
Metabolic stasis in an ancient symbiosis: Genome-scale metabolic networks from two Blattabacterium cuenoti strains, primary endosymbionts of cockroaches
-
Gonzá lez-Domenech C.M, et al. (2012). Metabolic stasis in an ancient symbiosis: genome-scale metabolic networks from two Blattabacterium cuenoti strains, primary endosymbionts of cockroaches. BMC Microbiology. 12, S5.
-
(2012)
BMC Microbiology
, vol.12
, pp. S5
-
-
González-Domenech, C.M.1
-
8
-
-
84864923763
-
Designing optimal cell factories: Integer programming couples elementary mode analysis with regulation
-
Jungreuthmayer C, and Zanghellini J. (2012). Designing optimal cell factories: integer programming couples elementary mode analysis with regulation. BMC Syst. Biol., 6, 103.
-
(2012)
BMC Syst. Biol
, vol.6
, pp. 103
-
-
Jungreuthmayer, C.1
Zanghellini, J.2
-
9
-
-
0036500993
-
Systems biology: A brief overview
-
Kitano H. (2002). Systems biology: a brief overview. Science. 295, 1662-1664.
-
(2002)
Science
, vol.295
, pp. 1662-1664
-
-
Kitano, H.1
-
10
-
-
34548825690
-
Towards a theory of biological robustness
-
Kitano H. (2007). Towards a theory of biological robustness. Mol. Syst. Biol., 3, 137.
-
(2007)
Mol. Syst. Biol
, vol.3
, pp. 137
-
-
Kitano, H.1
-
11
-
-
32144453095
-
Generalized concept of minimal cut sets in biochemical networks
-
Klamt S. (2006). Generalized concept of minimal cut sets in biochemical networks. Biosystems. 83, 233-247.
-
(2006)
Biosystems
, vol.83
, pp. 233-247
-
-
Klamt, S.1
-
12
-
-
1042269472
-
Minimal cut sets in biochemical reaction networks
-
Klamt S, and Gilles E.D. (2004). Minimal cut sets in biochemical reaction networks. Bioinformatics. 20, 226-234.
-
(2004)
Bioinformatics
, vol.20
, pp. 226-234
-
-
Klamt, S.1
Gilles, E.D.2
-
13
-
-
80052416535
-
Robustness of metabolic networks: A review of existing definitions
-
Larhlimi A, et al. (2011). Robustness of metabolic networks: a review of existing definitions. Biosystems. 106, 1-8.
-
(2011)
Biosystems
, vol.106
, pp. 1-8
-
-
Larhlimi, A.1
-
14
-
-
84867339877
-
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
-
Lee H, et al. (2012). Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc. Natl Acad. Sci. USA. 109, E2774-E2783.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. E2774-E2783
-
-
Lee, H.1
-
15
-
-
34848860800
-
Cockroaches that lack Blattabacterium endosymbionts: The phylogenetically divergent genus Nocticola
-
Lo N, et al. (2007). Cockroaches that lack Blattabacterium endosymbionts: the phylogenetically divergent genus Nocticola. Biol. Lett., 3, 327-330.
-
(2007)
Biol. Lett
, vol.3
, pp. 327-330
-
-
Lo, N.1
-
16
-
-
78649323995
-
Pathway knockout and redundancy in metabolic networks
-
Min Y, et al. (2011). Pathway knockout and redundancy in metabolic networks. J. Theor. Biol., 270, 63-69.
-
(2011)
J. Theor. Biol
, vol.270
, pp. 63-69
-
-
Min, Y.1
-
17
-
-
84890290025
-
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments
-
Monk J.M, et al. (2013). Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments. Proc. Natl Acad. Sci. USA. 110, 20338-20343.
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 20338-20343
-
-
Monk, J.M.1
-
18
-
-
2942624207
-
Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast
-
Papp B, et al. (2004). Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast. Nature. 429, 661-664.
-
(2004)
Nature
, vol.429
, pp. 661-664
-
-
Papp, B.1
-
19
-
-
0004277168
-
-
Mathematical Association of America, Washington
-
Ryser H. (1963). Combinatorial Mathematics. Mathematical Association of America, Washington
-
(1963)
Combinatorial Mathematics
-
-
Ryser, H.1
-
20
-
-
73349101558
-
Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endosymbiont
-
Sabree Z.L, et al. (2009). Nitrogen recycling and nutritional provisioning by Blattabacterium, the cockroach endosymbiont. Proc. Natl Acad. Sci. USA. 106, 19521-19526.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 19521-19526
-
-
Sabree, Z.L.1
-
21
-
-
77953636364
-
Chromosome stability and gene loss in cockroach endosymbionts
-
Sabree Z.L, et al. (2010). Chromosome stability and gene loss in cockroach endosymbionts. Appl. Environ. Microbiol., 76, 4076-4079.
-
(2010)
Appl. Environ. Microbiol
, vol.76
, pp. 4076-4079
-
-
Sabree, Z.L.1
-
22
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks
-
Schuster S, et al. (2000) A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks. Nat. Biotech., 18, 326-332.
-
(2000)
Nat. Biotech
, vol.18
, pp. 326-332
-
-
Schuster, S.1
-
23
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling J, et al. (2002). Metabolic network structure determines key aspects of functionality and regulation. Nature. 420, 190-193.
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
-
24
-
-
4544346660
-
Robustness of cellular functions
-
Stelling J, et al. (2004). Robustness of cellular functions. Cell. 118, 675-685.
-
(2004)
Cell
, vol.118
, pp. 675-685
-
-
Stelling, J.1
-
25
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
Thiele I, and Palsson B.Ø. (2010) A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc., 5, 93-121.
-
(2010)
Nat. Protoc
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.Ø.2
-
26
-
-
45749137679
-
Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses
-
Trinh C.T, et al. (2008). Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses. Appl. Environ. Microbiol., 74, 3634-3643.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 3634-3643
-
-
Trinh, C.T.1
-
27
-
-
84896701551
-
Fast reconstruction of compact context-specific metabolic network models
-
Vlassis N, et al. (2014). Fast reconstruction of compact context-specific metabolic network models. PLoS Comput. Biol., 10, e1003424.
-
(2014)
PLoS Comput. Biol
, vol.10
, pp. e1003424
-
-
Vlassis, N.1
-
28
-
-
84896731390
-
Enumeration of smallest intervention strategies in genome-scalemetabolic networks
-
von Kamp A, and Klamt S. (2014). Enumeration of smallest intervention strategies in genome-scalemetabolic networks. PLoS Comput. Biol., 10, e1003378.
-
(2014)
PLoS Comput. Biol
, vol.10
, pp. e1003378
-
-
Von Kamp, A.1
Klamt, S.2
-
29
-
-
84882857512
-
Chapter 13-genotype networks and evolutionary innovations in biological systems
-
Walhout A. J. M, et al. (eds. Academic Press, San Diego
-
Wagner A. (2013). Chapter 13-genotype networks and evolutionary innovations in biological systems. In: Walhout A. J. M, et al. (eds.) Handbook of Systems Biology. Academic Press, San Diego, pp. 251-264.
-
(2013)
Handbook of Systems Biology
, pp. 251-264
-
-
Wagner, A.1
-
30
-
-
27144450553
-
Analysis of structural robustness of metabolic networks
-
Wilhelm T, et al. (2004). Analysis of structural robustness of metabolic networks. IEE Proc. Syst. Biol., 1, 114-120.
-
(2004)
IEE Proc. Syst. Biol
, vol.1
, pp. 114-120
-
-
Wilhelm, T.1
-
31
-
-
84921301913
-
Characterizing metabolic pathway diversification in the context of perturbation size
-
Yang L, et al. (2015). Characterizing metabolic pathway diversification in the context of perturbation size. Metab. Eng., 28, 114-122.
-
(2015)
Metab. Eng
, vol.28
, pp. 114-122
-
-
Yang, L.1
|