Mouse Genome Database 2016

Nucleic Acids Research

Volumn 44, Issue D1, 2016, Pages D840-D847

  Bult, Carol J ^a   Eppig, Janan T ^a   Blake, Judith A ^a   Kadin, James A ^a   Richardson, Joel E ^a   Anagnostopoulos, A ^b   Baldarelli, R M ^b   Beal, J S ^b   Bello, S M ^b   Berghout, J ^b   Butler, N E ^b   Corbani, L E ^b   Giannatto, S L ^b   Dene, H ^b   Drabkin, H J ^b   Forthofer, K L ^b   Hale, P ^b   Hutchins, L ^b   Knowlton, M ^b   Law, M ^b   Lewis, J R ^b   McAndrews, M ^b   Montenko, H ^b   Ni, L ^b   Onda, H ^b   Pitman, W ^b   Recla, J M ^b   Reed, D J ^b   Richards Smith, B ^b   Sitnikov, D ^b   Smith, C L ^b   Tomczuk, M ^b   Washburn, L L ^b   Zhu, Y ^b   more..

^a JACKSON LABORATORY   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ALLELE; ARTICLE; EXPERIMENTAL MODEL; GENE FUNCTION; GENE MUTATION; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC VARIATION; GENOME; MOUSE; MOUSE STRAIN; NONHUMAN; ONLINE SYSTEM; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; ANIMAL; DISEASE MODEL; GENE; GENETICS;

ALLELES; ANIMALS; DATABASES, GENETIC; DISEASE MODELS, ANIMAL; GENES; GENOME; MICE; PHENOTYPE;

EID: 84959903228     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv1211     Document Type: Article

References (36)

1. Keane, T. M., Goodstadt, L., Danecek, P., White, M. A., Wong, K., Yalcin, B., Heger, A., Agam, A., Slater, G., Goodson, M. et al. (2011) Mouse genomic variation and its effect on phenotypes and gene regulation. Nature, 477, 289-294.
2. Mali, P., Yang, L., Esvelt, K. M., Aach, J., Guell, M., DiCarlo, J. E., Norville, J. E. and Church, G. M. (2013) RNA-guided human genome engineering via Cas9. Science, 339, 823-826.
3. Wang, H., Yang, H., Shivalila, C. S., Dawlaty, M. M., Cheng, A. W., Zhang, F. and Jaenisch, R. (2013) One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering. Cell, 153, 910-918.
4. International Mouse Knockout Consortium, Collins, F. S., Rossant, J. and Wurst, W. (2007) A mouse for all reasons. Cell, 128, 9-13.
5. Bradley, A., Anastassiadis, K., Ayadi, A., Battey, J. F., Bell, C., Birling, M. C., Bottomley, J., Brown, S. D., Burger, A., Bult, C. J. et al. (2012) The mammalian gene function resource: the International Knockout Mouse Consortium. Mamm. Genome, 23, 580-586.
6. Brown, S. D. and Moore, M. W. (2012) The International Mouse Phenotyping Consortium: past and future perspectives on mouse phenotyping. Mamm. Genome, 23, 632-640.
7. Threadgill, D. W. and Churchill, G. A. (2012) Ten years of the collaborative cross. G 3, 2, 153-156.
8. Collaborative Cross Consortium. (2012) The genome architecture of the Collaborative Cross mouse genetic reference population. Genetics, 190, 389-401.
9. Churchill, G. A., Gatti, D. M., Munger, S. C. and Svenson, K. L. (2012) The Diversity Outbred mouse population. Mamm. Genome, 23, 713-718.
10. Svenson, K. L., Gatti, D. M., Valdar, W., Welsh, C. E., Cheng, R., Chesler, E. J., Palmer, A. A., McMillan, L. and Churchill, G. A. (2012) High-resolution genetic mapping using the Mouse Diversity outbred population. Genetics, 190, 437-447.
11. Chesler, E. J. (2014) Out of the bottleneck: the Diversity Outcross and Collaborative Cross mouse populations in behavioral genetics research. Mamm. Genome, 25, 3-11.
12. Philip, V. M., Sokoloff, G., Ackert-Bicknell, C. L., Striz, M., Branstetter, L., Beckmann, M. A., Spence, J. S., Jackson, B. L., Galloway, L. D., Barker, P. et al. (2011) Genetic analysis in the Collaborative Cross breeding population. Genome Res., 21, 1223-1238.
13. Logan, R. W., Robledo, R. F., Recla, J. M., Philip, V. M., Bubier, J. A., Jay, J. J., Harwood, C., Wilcox, T., Gatti, D. M., Bult, C. J. et al. (2013) High-precision genetic mapping of behavioral traits in the diversity outbred mouse population. Genes Brain Behav., 12, 424-437.
14. Smith, C. M., Finger, J. H., Hayamizu, T. F., McCright, I. J., Xu, J., Eppig, J. T., Kadin, J. A., Richardson, J. E. and Ringwald, M. (2015) GXD: a community resource of mouse Gene Expression Data. Mamm. Genome, 26, 314-324.
15. Bult, C. J., Krupke, D. M., Begley, D. A., Richardson, J. E., Neuhauser, S. B., Sundberg, J. P. and Eppig, J. T. (2015) Mouse Tumor Biology (MTB): a database of mouse models for human cancer. Nucleic Acids Res., 43, D818-D824.
16. Gene Ontology, C. (2015) Gene Ontology Consortium: going forward. Nucleic Acids Res., 43, D1049-D1056.
17. Motenko, H., Neuhauser, S. B., O'Keefe, M. and Richardson, J. E. (2015) MouseMine: a new data warehouse for MGI. Mamm. Genome, 26, 325-330.
18. Evsikov, A. V., Dolan, M. E., Genrich, M. P., Patek, E. and Bult, C. J. (2009) MouseCyc: a curated biochemical pathways database for the laboratory mouse. Genome Biol., 10, R84.
19. Dolan, M. E., Baldarelli, R. M., Bello, S. M., Ni, L., McAndrews, M. S., Bult, C. J., Kadin, J. A., Richardson, J. E., Ringwald, M., Eppig, J. T. et al. (2015) Orthology for comparative genomics in the mouse genome database. Mamm. Genome, 26, 305-313.
20. Drabkin, H. J., Christie, K. R., Dolan, M. E., Hill, D. P., Ni, L., Sitnikov, D. and Blake, J. A. (2015) Application of comparative biology in GO functional annotation: the mouse model. Mamm. Genome, 26, 574-583.
21. NCBI Resource Coordinators. (2015) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 43, D6-D17.
22. Blake, J. A., Bult, C. J., Eppig, J. T., Kadin, J. A., Richardson, J. E. and Mouse Genome Database, G. (2014) The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res., 42, D810-D817.
23. Gray, K. A., Yates, B., Seal, R. L., Wright, M. W. and Bruford, E. A. (2015) Genenames.org: the HGNC resources in 2015. Nucleic Acids Res., 43, D1079-D1085.
24. Vilella, A. J., Severin, J., Ureta-Vidal, A., Heng, L., Durbin, R. and Birney, E. (2009) EnsemblCompara GeneTrees: complete, duplication-aware phylogenetic trees in vertebrates. Genome Res., 19, 327-335.
25. Nikolskaya, A. N., Arighi, C. N., Huang, H., Barker, W. C. and Wu, C. H. (2006) PIRSF family classification system for protein functional and evolutionary analysis. Evol. Bioinform. Online, 2, 197-209.
26. Mi, H., Muruganujan, A. and Thomas, P. D. (2013) PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees. Nucleic Acids Res., 41, D377-D386.
27. White, J. K., Gerdin, A. K., Karp, N. A., Ryder, E., Buljan, M., Bussell, J. N., Salisbury, J., Clare, S., Ingham, N. J., Podrini, C. et al. (2013) Genome-wide generation and systematic phenotyping of knockout mice reveals new roles for many genes. Cell, 154, 452-464.
28. Morgan, H., Beck, T., Blake, A., Gates, H., Adams, N., Debouzy, G., Leblanc, S., Lengger, C., Maier, H., Melvin, D. et al. (2010) EuroPhenome: a repository for high-throughput mouse phenotyping data. Nucleic Acids Res., 38, D577-D585.
29. Shimoyama, M., De Pons, J., Hayman, G. T., Laulederkind, S. J., Liu, W., Nigam, R., Petri, V., Smith, J. R., Tutaj, M., Wang, S. J. et al. (2015) The Rat Genome Database 2015: genomic, phenotypic and environmental variations and disease. Nucleic Acids Res., 43, D743-D750.
30. Eppig, J. T., Motenko, H., Richardson, J. E., Richards-Smith, B. and Smith, C. L. (2015) The International Mouse Strain Resource (IMSR): cataloging worldwide mouse and ES cell line resources. Mamm. Genome, 26, 448-455.
31. Skinner, M. E., Uzilov, A. V., Stein, L. D., Mungall, C. J. and Holmes, I. H. (2009) JBrowse: a next-generation genome browser. Genome Res., 19, 1630-1638.
32. Bult, C. J., Kadin, J. A., Richardson, J. E., Blake, J. A., Eppig, J. T. and Mouse Genome Database, G. (2010) The Mouse Genome Database: enhancements and updates. Nucleic Acids Res., 38, D586-D592.
33. Bult, C. J., Eppig, J. T., Kadin, J. A., Richardson, J. E., Blake, J. A. and Mouse Genome Database, G. (2008) The Mouse Genome Database (MGD): mouse biology and model systems. Nucleic Acids Res., 36, D724-D728.
34. Smith, R. N., Aleksic, J., Butano, D., Carr, A., Contrino, S., Hu, F., Lyne, M., Lyne, R., Kalderimis, A., Rutherford, K. et al. (2012) InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. Bioinformatics, 28, 3163-3165.
35. Lyne, R., Smith, R., Rutherford, K., Wakeling, M., Varley, A., Guillier, F., Janssens, H., Ji, W., McLaren, P., North, P. et al. (2007) FlyMine: an integrated database for Drosophila and Anopheles genomics. Genome Biol., 8, R129.
36. Balakrishnan, R., Park, J., Karra, K., Hitz, B. C., Binkley, G., Hong, E. L., Sullivan, J., Micklem, G. and Cherry, J. M. (2012) YeastMine-an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit. Database, bar062.