메뉴 건너뛰기




Volumn 22, Issue 3, 2006, Pages 276-288

From conviction to anti-superfluity: Old and new justifications of parsimony in phylogenetic inference

Author keywords

[No Author keywords available]

Indexed keywords

HOMOLOGY; PHYLOGENY; TRANSFORMATION;

EID: 33745011394     PISSN: 07483007     EISSN: 10960031     Source Type: Journal    
DOI: 10.1111/j.1096-0031.2006.00100.x     Document Type: Review
Times cited : (72)

References (76)
  • 1
    • 3843090360 scopus 로고    scopus 로고
    • Quantitative parsimony and explanatory power
    • Baker A., 2003. Quantitative parsimony and explanatory power. Br. J. Phil. Sci. 54, 245 259.
    • (2003) Br. J. Phil. Sci. , vol.54 , pp. 245-259
    • Baker, A.1
  • 2
    • 3843152506 scopus 로고    scopus 로고
    • Ockham's Razor and the anti-superfluity principle
    • Barnes E.C., 2000. Ockham's Razor and the anti-superfluity principle. Erkenntnis, 53, 353 374.
    • (2000) Erkenntnis , vol.53 , pp. 353-374
    • Barnes, E.C.1
  • 3
    • 84989412861 scopus 로고
    • On the independence of systematics
    • Brady R.H., 1985. On the independence of systematics. Cladistics, 1, 113 126.
    • (1985) Cladistics , vol.1 , pp. 113-126
    • Brady, R.H.1
  • 4
    • 2942664468 scopus 로고    scopus 로고
    • On 'Molecular phylogeny of Vespidae (Hymenoptera) and the evolution of sociality in waSPS.'
    • Carpenter J.M., 2003. On 'Molecular phylogeny of Vespidae (Hymenoptera) and the evolution of sociality in waSPS.' Am. Mus. Novitates, 3389, 1 17.
    • (2003) Am. Mus. Novitates , vol.3389 , pp. 1-17
    • Carpenter, J.M.1
  • 6
    • 0347662234 scopus 로고
    • On the individuation of events
    • Davidson D., 1991. On the individuation of events. Synthese, 86, 229 254.
    • (1991) Synthese , vol.86 , pp. 229-254
    • Davidson, D.1
  • 8
    • 4243151659 scopus 로고    scopus 로고
    • Concordant evolution of plumage colour, feather microstructure and a melanocortin receptor gene between mainland and island populations of a fairy-wren
    • Doucet S.M. Shawkey M.D. Rathburn M.K. Mays H.L., Jr.. Montgomerie R., 2004. Concordant evolution of plumage colour, feather microstructure and a melanocortin receptor gene between mainland and island populations of a fairy-wren. Proc. R. Soc. Lond. B, 271, 1663 1670.
    • (2004) Proc. R. Soc. Lond. B , vol.271 , pp. 1663-1670
    • Doucet, S.M.1    Shawkey, M.D.2    Rathburn, M.K.3    Mays Jr., H.L.4    Montgomerie, R.5
  • 9
    • 0036969229 scopus 로고    scopus 로고
    • Evolutionary relationships among blue- and black-plumaged populations of the white-winged fairy-wren (Malurus leucopterus)
    • Driskell A.C. Pruett-Jones S. Tarvin K.A. Hagevik S., 2002. Evolutionary relationships among blue- and black-plumaged populations of the white-winged fairy-wren (Malurus leucopterus). Aust. J. Zool. 50, 581 595.
    • (2002) Aust. J. Zool. , vol.50 , pp. 581-595
    • Driskell, A.C.1    Pruett-Jones, S.2    Tarvin, K.A.3    Hagevik, S.4
  • 10
    • 84963071318 scopus 로고
    • The meaning of relationship and taxonomic procedure
    • Farris J.S., 1967. The meaning of relationship and taxonomic procedure. Syst. Zool. 16, 44 51.
    • (1967) Syst. Zool. , vol.16 , pp. 44-51
    • Farris, J.S.1
  • 11
    • 84959743928 scopus 로고
    • Methods for computing Wagner Trees
    • Farris J.S., 1970. Methods for computing Wagner Trees. Syst. Zool. 19, 83 92.
    • (1970) Syst. Zool. , vol.19 , pp. 83-92
    • Farris, J.S.1
  • 12
    • 84959735289 scopus 로고
    • The efficient diagnoses of the phylogenetic system
    • Farris J.S., 1980. The efficient diagnoses of the phylogenetic system. Syst. Zool. 29, 386 401.
    • (1980) Syst. Zool. , vol.29 , pp. 386-401
    • Farris, J.S.1
  • 13
    • 84959822396 scopus 로고
    • Simplicity and informativeness in systematics and phylogeny
    • Farris J.S., 1982. Simplicity and informativeness in systematics and phylogeny. Syst. Zool. 31, 413 444.
    • (1982) Syst. Zool. , vol.31 , pp. 413-444
    • Farris, J.S.1
  • 14
    • 0001151063 scopus 로고
    • The logical basis of phylogenetic analysis
    • In: Platnick, N.I. Funk, V.A. (Eds. Columbia University Press, New York, pp.
    • Farris J.S., 1983. The logical basis of phylogenetic analysis. In : Platnick N.I. Funk V.A. (Eds Advances in Cladistics II. Columbia University Press, New York, pp. 7 36.
    • (1983) Advances in Cladistics II. , pp. 7-36
    • Farris, J.S.1
  • 15
    • 0038767589 scopus 로고
    • Entropy and fruit flies
    • Farris J.S., 1989. Entropy and fruit flies. Cladistics, 5, 103 108.
    • (1989) Cladistics , vol.5 , pp. 103-108
    • Farris, J.S.1
  • 16
    • 84963088905 scopus 로고
    • A numerical approach to phylogenetic systematics
    • Farris J.S. Kluge A.G. Eckardt M.J., 1970. A numerical approach to phylogenetic systematics. Syst. Zool. 19, 172 189.
    • (1970) Syst. Zool. , vol.19 , pp. 172-189
    • Farris, J.S.1    Kluge, A.G.2    Eckardt, M.J.3
  • 17
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J., 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27, 401 410.
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 19
    • 0034178257 scopus 로고    scopus 로고
    • Homology: A personal view on some of the problems
    • Fitch W.M., 2004. Homology: a personal view on some of the problems. Trends Genet. 16, 227 231.
    • (2004) Trends Genet. , vol.16 , pp. 227-231
    • Fitch, W.M.1
  • 20
    • 0344430855 scopus 로고
    • Maximum likelihood inference of phylogenetic trees, with special reference to a Poisson process model of DNA substitution and to parsimony analyses
    • Goldman N., 1990. Maximum likelihood inference of phylogenetic trees, with special reference to a Poisson process model of DNA substitution and to parsimony analyses. Syst. Zool. 39, 345 361.
    • (1990) Syst. Zool. , vol.39 , pp. 345-361
    • Goldman, N.1
  • 22
    • 0038048942 scopus 로고    scopus 로고
    • Parsimony, likelihood, and simplicity
    • Goloboff P.A., 2003. Parsimony, likelihood, and simplicity. Cladistics, 19, 91 103.
    • (2003) Cladistics , vol.19 , pp. 91-103
    • Goloboff, P.A.1
  • 24
    • 0036213549 scopus 로고    scopus 로고
    • Testing methods: The evaluation of discovery operations in evolutionary biology
    • Grant T., 2002. Testing methods: the evaluation of discovery operations in evolutionary biology. Cladistics, 18, 94 111.
    • (2002) Cladistics , vol.18 , pp. 94-111
    • Grant, T.1
  • 25
    • 1642326753 scopus 로고    scopus 로고
    • Transformation series as an ideographic character concept
    • Grant T. Kluge A.G., 2004. Transformation series as an ideographic character concept. Cladistics, 20, 23 31.
    • (2004) Cladistics , vol.20 , pp. 23-31
    • Grant, T.1    Kluge, A.G.2
  • 27
    • 0008250546 scopus 로고
    • On perception of plant morphology: Some implications for phylogeny
    • In: Ingram, D. Hudson, A. (Eds. Academic Press, London, pp.
    • Hay A. Mabberley D.J., 1994. On perception of plant morphology: Some implications for phylogeny. In : Ingram D. Hudson A. (Eds Shape and Form in Plants and Fungi. Academic Press, London, pp. 101 117.
    • (1994) Shape and Form in Plants and Fungi. , pp. 101-117
    • Hay, A.1    Mabberley, D.J.2
  • 30
    • 0031395952 scopus 로고    scopus 로고
    • Testability and the refutation and corroboration of cladistic hypotheses
    • Kluge A.G., 1997. Testability and the refutation and corroboration of cladistic hypotheses. Cladistics, 13, 81 96.
    • (1997) Cladistics , vol.13 , pp. 81-96
    • Kluge, A.G.1
  • 31
    • 0031430478 scopus 로고    scopus 로고
    • Sophisticated falsification and research cycles: Consequences for differential character weighting in phylogenetic systematics
    • Kluge A.G., 1998. Sophisticated falsification and research cycles: Consequences for differential character weighting in phylogenetic systematics. Zool. Scripta, 26, 349 360.
    • (1998) Zool. Scripta , vol.26 , pp. 349-360
    • Kluge, A.G.1
  • 32
    • 0033511221 scopus 로고    scopus 로고
    • The science of phylogenetic systematics: Explanation, prediction, and test
    • Kluge A.G., 1999. The science of phylogenetic systematics: explanation, prediction, and test. Cladistics, 15, 429 436.
    • (1999) Cladistics , vol.15 , pp. 429-436
    • Kluge, A.G.1
  • 33
    • 0035527349 scopus 로고    scopus 로고
    • Philosophical conjectures and their refutation
    • Kluge A.G., 2001. Philosophical conjectures and their refutation. Syst. Biol. 50, 322 330.
    • (2001) Syst. Biol. , vol.50 , pp. 322-330
    • Kluge, A.G.1
  • 34
    • 0036968493 scopus 로고    scopus 로고
    • Distinguishing 'or' from 'and' and the case for historical identification
    • Kluge A.G., 2002. Distinguishing 'or' from 'and' and the case for historical identification. Cladistics, 18, 585 593.
    • (2002) Cladistics , vol.18 , pp. 585-593
    • Kluge, A.G.1
  • 35
    • 0041924987 scopus 로고    scopus 로고
    • On the deduction of species relationships: A précis
    • Kluge A.G., 2003a. On the deduction of species relationships: a précis. Cladistics, 19, 233 239.
    • (2003) Cladistics , vol.19 , pp. 233-239
    • Kluge, A.G.1
  • 36
    • 0043241707 scopus 로고    scopus 로고
    • The repugnant and the mature in phylogenetic inference: Atemporal similarity and historical identity
    • Kluge A.G., 2003b. The repugnant and the mature in phylogenetic inference: atemporal similarity and historical identity. Cladistics, 19, 356 368.
    • (2003) Cladistics , vol.19 , pp. 356-368
    • Kluge, A.G.1
  • 37
    • 2942525509 scopus 로고    scopus 로고
    • On total evidence: For the record
    • Kluge A.G., 2004a. On total evidence: for the record. Cladistics, 20, 205 207.
    • (2004) Cladistics , vol.20 , pp. 205-207
    • Kluge, A.G.1
  • 38
    • 33745017326 scopus 로고    scopus 로고
    • Quantitative phylogenetic systematics: A new/old paradigm in phylogenetic inference. In: Grandcolas, P. (Ed.), Abstracts of the 23rd Annual Meeting of the Willi Hennig Society. "phylogenetics and Evolutionary Biology"
    • Kluge A.G., 2004b. Quantitative phylogenetic systematics: a new/old paradigm in phylogenetic inference. In: Grandcolas, P. (Ed.), Abstracts of the 23rd Annual Meeting of the Willi Hennig Society. "Phylogenetics and Evolutionary Biology". Cladistics, 20, 598.
    • (2004) Cladistics , vol.20 , pp. 598
    • Kluge, A.G.1
  • 39
    • 28844471764 scopus 로고    scopus 로고
    • What is the rationale for 'Ockham's Razor' (a.k.a. Parsimony) in phylogenetic inference?
    • In: Albert, V. (Ed.), Oxford University Press, Oxford, pp.
    • Kluge A.G., 2005a. What is the rationale for 'Ockham's Razor' (a.k.a. Parsimony) in phylogenetic inference?. In : Albert V. (Ed.), Parsimony, Phylogeny, and Genomics. Oxford University Press, Oxford, pp. 15 42.
    • (2005) Parsimony, Phylogeny, and Genomics. , pp. 15-42
    • Kluge, A.G.1
  • 40
    • 28844457526 scopus 로고    scopus 로고
    • Testing lineage and comparative methods for inferring adaptation
    • Kluge A.G., 2005b. Testing lineage and comparative methods for inferring adaptation. Zool. Scripta, 34, 653 663.
    • (2005) Zool. Scripta , vol.34 , pp. 653-663
    • Kluge, A.G.1
  • 41
    • 84963036271 scopus 로고
    • Quantitative phyletics and the evolution of anurans
    • Kluge A.G. Farris J.S., 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18, 1 32.
    • (1969) Syst. Zool. , vol.18 , pp. 1-32
    • Kluge, A.G.1    Farris, J.S.2
  • 42
    • 0001228405 scopus 로고    scopus 로고
    • Taxic homology = overall similarity
    • Kluge A.G. Farris J.S., 1999. Taxic homology = overall similarity. Cladistics, 15, 205 212.
    • (1999) Cladistics , vol.15 , pp. 205-212
    • Kluge, A.G.1    Farris, J.S.2
  • 43
    • 7244221755 scopus 로고    scopus 로고
    • Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
    • Kolaczkowski B. Thornton J.W., 2004. Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous. Nature, 431, 980 984.
    • (2004) Nature , vol.431 , pp. 980-984
    • Kolaczkowski, B.1    Thornton, J.W.2
  • 44
    • 0002479337 scopus 로고
    • Falsification and the methodology of scientific research programmes
    • In: Lakatos, I. Musgrave, A. (Eds. Cambridge University Press, UK, pp.
    • Lakatos I., 1993. Falsification and the methodology of scientific research programmes. In : Lakatos I. Musgrave A. (Eds Criticism and the Growth of Knowledge. Cambridge University Press, UK, pp. 91 196.
    • (1993) Criticism and the Growth of Knowledge. , pp. 91-196
    • Lakatos, I.1
  • 46
    • 1542393611 scopus 로고    scopus 로고
    • Effective complexity as a measure of information content
    • McAllister J.W., 2003. Effective complexity as a measure of information content. Philos. Sci. 70, 303 307.
    • (2003) Philos. Sci. , vol.70 , pp. 303-307
    • McAllister, J.W.1
  • 52
    • 4544291929 scopus 로고    scopus 로고
    • The measurement of test severity, significance tests for resolution, and a unified philosophy of phylogenetic inference
    • de Queiroz K., 2004. The measurement of test severity, significance tests for resolution, and a unified philosophy of phylogenetic inference. Zool. Scripta, 33, 463 473.
    • (2004) Zool. Scripta , vol.33 , pp. 463-473
    • De Queiroz, K.1
  • 53
    • 0035527346 scopus 로고    scopus 로고
    • Philosophy and phylogenetic inference: A comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration
    • de Queiroz K. Poe S., 2001. Philosophy and phylogenetic inference: a comparison of likelihood and parsimony methods in the context of Karl Popper's writings on corroboration. Syst. Biol. 50, 305 321.
    • (2001) Syst. Biol. , vol.50 , pp. 305-321
    • De Queiroz, K.1    Poe, S.2
  • 54
    • 0038487291 scopus 로고    scopus 로고
    • Failed refutations: Further comments on parsimony and likelihood methods and their relationship to Popper's degree of corroboration
    • de Queiroz K. Poe S., 2003. Failed refutations: Further comments on parsimony and likelihood methods and their relationship to Popper's degree of corroboration. Syst. Biol. 52, 352 367.
    • (2003) Syst. Biol. , vol.52 , pp. 352-367
    • De Queiroz, K.1    Poe, S.2
  • 56
    • 0012820083 scopus 로고    scopus 로고
    • The meaning of homology. Biodiversity in the Information Age
    • [Abstracts] Department of Biology. University of Patras, Patras, Greece, p.
    • Rieppel O., 2002. The meaning of homology. Biodiversity in the Information Age. [Abstracts] Sixth International Congress of Systematics and Evolutionary Biology. Department of Biology. University of Patras, Patras, Greece, p. 195.
    • (2002) Sixth International Congress of Systematics and Evolutionary Biology. , pp. 195
    • Rieppel, O.1
  • 60
    • 0016424695 scopus 로고
    • Minimal mutation trees of sequences
    • Sankoff D., 1975. Minimal mutation trees of sequences. SIAM J. Appl. Math. 28, 35 42.
    • (1975) SIAM J. Appl. Math. , vol.28 , pp. 35-42
    • Sankoff, D.1
  • 61
    • 0017293845 scopus 로고
    • Frequency of insertion-deletion, transversion, and transition in evolution of 5S ribosomal RNA
    • Sankoff D. Cedergren R.J. Lapalme G., 1976. Frequency of insertion-deletion, transversion, and transition in evolution of 5S ribosomal RNA Mol. Evol. 7, 133 149.
    • (1976) Mol. Evol. , vol.7 , pp. 133-149
    • Sankoff, D.1    Cedergren, R.J.2    Lapalme, G.3
  • 62
    • 84943254465 scopus 로고
    • Homology, homeosis and process morphology in plants
    • In: Hall, B.K. (Ed.), Academic Press, San Diego, CA, pp.
    • Sattler R., 1994. Homology, homeosis and process morphology in plants. In : Hall B.K. (Ed.), Homology: the Hierarchical Basis of Comparative Biology. Academic Press, San Diego, CA, pp. 423 475.
    • (1994) Homology: The Hierarchical Basis of Comparative Biology. , pp. 423-475
    • Sattler, R.1
  • 63
    • 0344430832 scopus 로고    scopus 로고
    • Probabilism and phylogenetic inference
    • Siddall M.E. Kluge A.G., 1997. Probabilism and phylogenetic inference. Cladistics, 13, 313 336.
    • (1997) Cladistics , vol.13 , pp. 313-336
    • Siddall, M.E.1    Kluge, A.G.2
  • 64
    • 2442507933 scopus 로고    scopus 로고
    • Independence of alignment and tree search
    • Simmons M.P., 2004. Independence of alignment and tree search. Mol. Phylo. Evol. 31, 874 879.
    • (2004) Mol. Phylo. Evol. , vol.31 , pp. 874-879
    • Simmons, M.P.1
  • 65
    • 84971193259 scopus 로고
    • Buffon, German biology, and the historical interpretation of biological species
    • Sloan P.R., 1979. Buffon, German biology, and the historical interpretation of biological species. Br. J. Hist. Sci. 12, 109 153.
    • (1979) Br. J. Hist. Sci. , vol.12 , pp. 109-153
    • Sloan, P.R.1
  • 66
    • 33745033207 scopus 로고
    • Richard Owen's Hunterian Lectures at the Royal College of Physicians, May-June 1837. University of Chicago Press, Chicago, IL.
    • Sloan P.R., 1992. Richard Owen's Hunterian Lectures at the Royal College of Physicians, May-June 1837. University of Chicago Press, Chicago, IL.
    • (1992)
    • Sloan, P.R.1
  • 67
    • 0042819512 scopus 로고
    • Why logically equivalent predicates may pick out different properties
    • Sober E., 1982. Why logically equivalent predicates may pick out different properties. Am. Philos. Quart. 19, 183 189.
    • (1982) Am. Philos. Quart. , vol.19 , pp. 183-189
    • Sober, E.1
  • 68
    • 0010960765 scopus 로고
    • Parsimony and character weighting
    • Sober E., 1986. Parsimony and character weighting. Cladistics, 2, 28 42.
    • (1986) Cladistics , vol.2 , pp. 28-42
    • Sober, E.1
  • 70
    • 4644295677 scopus 로고    scopus 로고
    • The contest between parsimony and likelihood
    • Sober E., 2004. The contest between parsimony and likelihood. Syst. Biol. 53, 644 653.
    • (2004) Syst. Biol. , vol.53 , pp. 644-653
    • Sober, E.1
  • 71
    • 0031149251 scopus 로고    scopus 로고
    • Links between maximum likelihood and maximum parsimony under a simple model of site substitution
    • Tuffley C. Steel M., 1997. Links between maximum likelihood and maximum parsimony under a simple model of site substitution. Bull. Math. Biol. 59, 581 307.
    • (1997) Bull. Math. Biol. , vol.59 , pp. 581-307
    • Tuffley, C.1    Steel, M.2
  • 72
    • 0028692811 scopus 로고
    • Sources of ambiguity in nucleic acid sequence alignment
    • In: Schierwater, B. Streit, B. Wagner, G.P. DeSalle, R. (Eds. Birkhäuser-Verlag, Basel, pp.
    • Wheeler W.C., 1994. Sources of ambiguity in nucleic acid sequence alignment. In : Schierwater B. Streit B. Wagner G.P. DeSalle R. (Eds Molecular Ecology and Evolution: Approaches and Applications. Birkhäuser-Verlag, Basel, pp. 323 352.
    • (1994) Molecular Ecology and Evolution: Approaches and Applications. , pp. 323-352
    • Wheeler, W.C.1
  • 73
    • 0001857390 scopus 로고    scopus 로고
    • Optimization alignment: The end of multiple sequence alignment in phylogenetics?
    • Wheeler W.C., 1996. Optimization alignment: the end of multiple sequence alignment in phylogenetics? Cladistics, 12, 1 10.
    • (1996) Cladistics , vol.12 , pp. 1-10
    • Wheeler, W.C.1
  • 76
    • 0001354070 scopus 로고
    • Evolution of higher-plant chloroplast DNA-encoded genes: Implications for structure-function and phylogenetic studies
    • Zurawski G. Clegg M.T., 1987. Evolution of higher-plant chloroplast DNA-encoded genes: implications for structure-function and phylogenetic studies. Ann. Rev. Plant Physiol. 38, 391 418.
    • (1987) Ann. Rev. Plant Physiol. , vol.38 , pp. 391-418
    • Zurawski, G.1    Clegg, M.T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.