Circulating free xeno-microRNAs - The new kids on the block

Molecular Oncology

Volumn 10, Issue 3, 2016, Pages 503-508

  Fabris, Linda ^a   Calin, George Adrian ^a  

^a UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER   (United States)

Author keywords

Cancer; Circulating free microRNAs; microRNA; XenomiR

Indexed keywords

MICRORNA; TUMOR MARKER; UNCLASSIFIED DRUG; XENO MICRORNA; PLANT RNA; VIRUS RNA;

ATHEROSCLEROSIS; CANCER SCREENING; GLIOBLASTOMA; HUMAN; LYMPHOMA; NEOPLASM; NONHUMAN; OSTEOCLASTOGENESIS; PLASMA; PRIMARY TUMOR; PRIORITY JOURNAL; PROGNOSIS; REVIEW; TARGET CELL; ANIMAL; BLOOD; GENE EXPRESSION REGULATION; GENETICS; ISOLATION AND PURIFICATION; VIROLOGY;

ANIMALS; BIOMARKERS, TUMOR; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; MICRORNAS; NEOPLASMS; RNA, PLANT; RNA, VIRAL;

EID: 84959079597     PISSN: 15747891     EISSN: 18780261     Source Type: Journal    
DOI: 10.1016/j.molonc.2016.01.005     Document Type: Review

References (51)

1. Arroyo J.D., Chevillet J.R., Kroh E.M., Ruf I.K., Pritchard C.C., Gibson D.F., Mitchell P.S., Bennett C.F., Pogosova-Agadjanyan E.L., Stirewalt D.L., et al. Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma. Proc. Natl. Acad. Sci. U. S. A. 2011, 108:5003-5008.
2. Baier S.R., Nguyen C., Xie F., Wood J.R., Zempleni J. MicroRNAs are absorbed in biologically meaningful amounts from nutritionally relevant doses of cow milk and affect gene expression in peripheral blood mononuclear cells, HEK-293 kidney cell cultures, and mouse livers. J. Nutr. 2014, 144:1495-1500.
3. Barichievy S., Naidoo J., Mhlanga M.M. Non-coding RNAs and HIV: viral manipulation of host dark matter to shape the cellular environment. Front. Genet. 2015, 6:108.
4. Berezikov E., Guryev V., van de Belt J., Wienholds E., Plasterk R.H., Cuppen E. Phylogenetic shadowing and computational identification of human microRNA genes. Cell 2005, 120:21-24.
5. Boss I.W., Nadeau P.E., Abbott J.R., Yang Y., Mergia A., Renne R. A Kaposi's sarcoma-associated herpesvirus-encoded ortholog of microRNA miR-155 induces human splenic B-cell expansion in NOD/LtSz-scid IL2Rgammanull mice. J. Virol. 2011, 85:9877-9886.
6. Calin G.A., Sevignani C., Dumitru C.D., Hyslop T., Noch E., Yendamuri S., Shimizu M., Rattan S., Bullrich F., Negrini M., et al. Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:2999-3004.
7. Carl J.W., Trgovcich J., Hannenhalli S. Widespread evidence of viral miRNAs targeting host pathways. BMC Bioinform. 2013, 14(Suppl. 2):S3.
8. Chen C.W., Cheng H.H. A rice bran oil diet increases LDL-receptor and HMG-CoA reductase mRNA expressions and insulin sensitivity in rats with streptozotocin/nicotinamide-induced type 2 diabetes. J. Nutr. 2006, 136:1472-1476.
9. Chen M., Calin G.A., Meng Q.H. Circulating microRNAs as promising tumor biomarkers. Adv. Clin. Chem. 2014, 67:189-214.
10. Chen X., Ba Y., Ma L., Cai X., Yin Y., Wang K., Guo J., Zhang Y., Chen J., Guo X., et al. Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res. 2008, 18:997-1006.
11. Chen X., Gao C., Li H., Huang L., Sun Q., Dong Y., Tian C., Gao S., Dong H., Guan D., et al. Identification and characterization of microRNAs in raw milk during different periods of lactation, commercial fluid, and powdered milk products. Cell Res. 2010, 20:1128-1137.
12. Di Leva G., Garofalo M., Croce C.M. MicroRNAs in cancer. Annu. Rev. Pathol. 2014, 9:287-314.
13. Fabbri M., Paone A., Calore F., Galli R., Gaudio E., Santhanam R., Lovat F., Fadda P., Mao C., Nuovo G.J., et al. MicroRNAs bind to Toll-like receptors to induce prometastatic inflammatory response. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:E2110-E2116.
14. Ferrajoli A., Ivan C., Ciccone M., Shimizu M., Kita Y., Ohtsuka M., D'Abundo L., Qiang J., Lerner S., Nouraee N., et al. Epstein-Barr virus microRNAs are expressed in patients with chronic lymphocytic leukemia and correlate with overall survival. EBioMedicine 2015, 2:572-582.
15. Gottwein E., Mukherjee N., Sachse C., Frenzel C., Majoros W.H., Chi J.T., Braich R., Manoharan M., Soutschek J., Ohler U., et al. A viral microRNA functions as an orthologue of cellular miR-155. Nature 2007, 450:1096-1099.
16. Herman A., Gruden K., Blejec A., Podpecan V., Motaln H., Rozman P., Hren M., Zupancic K., Veber M., Verbovsek U., et al. Analysis of glioblastoma patients' plasma revealed the presence of microRNAs with a prognostic impact on survival and those of viral origin. PLoS One 2015, 10:e0125791.
17. Kamm R.C., Smith A.G. Nucleic acid concentrations in normal human plasma. Clin. Chem. 1972, 18:519-522.
18. Kim V.N. MicroRNA biogenesis: coordinated cropping and dicing. Nat. Rev. Mol. Cell Biol. 2005, 6:376-385.
19. Kosaka N., Iguchi H., Yoshioka Y., Takeshita F., Matsuki Y., Ochiya T. Secretory mechanisms and intercellular transfer of microRNAs in living cells. J. Biol. Chem. 2010, 285:17442-17452.
20. Lewis B.P., Shih I.H., Jones-Rhoades M.W., Bartel D.P., Burge C.B. Prediction of mammalian microRNA targets. Cell 2003, 115:787-798.
21. Liang H., Zhang S., Fu Z., Wang Y., Wang N., Liu Y., Zhao C., Wu J., Hu Y., Zhang J., et al. Effective detection and quantification of dietetically absorbed plant microRNAs in human plasma. J. Nutr. Biochem. 2015, 26:505-512.
22. Melnik B.C., John S.M., Schmitz G. Milk: an exosomal microRNA transmitter promoting thymic regulatory T cell maturation preventing the development of atopy?. J. Transl. Med. 2014, 12:43.
23. Nachmani D., Stern-Ginossar N., Sarid R., Mandelboim O. Diverse herpesvirus microRNAs target the stress-induced immune ligand MICB to escape recognition by natural killer cells. Cell Host Microbe 2009, 5:376-385.
24. Pfeffer S., Zavolan M., Grasser F.A., Chien M., Russo J.J., Ju J., John B., Enright A.J., Marks D., Sander C., et al. Identification of virus-encoded microRNAs. Science 2004, 304:734-736.
25. Philip A., Ferro V.A., Tate R.J. Determination of the potential bioavailability of plant microRNAs using a simulated human digestion process. Mol. Nutr. Food Res. 2015, 59:1962-1972.
26. Place R.F., Li L.C., Pookot D., Noonan E.J., Dahiya R. MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:1608-1613.
27. Ramachandran S., Palanisamy V. Horizontal transfer of RNAs: exosomes as mediators of intercellular communication. Wiley Interdiscip. Rev. RNA 2012, 3:286-293.
28. Ramalingam D., Kieffer-Kwon P., Ziegelbauer J.M. Emerging themes from EBV and KSHV microRNA targets. Viruses 2012, 4:1687-1710.
29. Sam C.K., Brooks L.A., Niedobitek G., Young L.S., Prasad U., Rickinson A.B. Analysis of Epstein-Barr virus infection in nasopharyngeal biopsies from a group at high risk of nasopharyngeal carcinoma. Int. J. Cancer 1993, 53:957-962.
30. Sarkar N., Chakravarty R. Hepatitis B virus infection, microRNAs and liver disease. Int. J. Mol. Sci. 2015, 16:17746-17762.
31. Schwarzenbach H., Hoon D.S., Pantel K. Cell-free nucleic acids as biomarkers in cancer patients. Nat. Rev. Cancer 2011, 11:426-437.
32. Schwarzenbach H., Nishida N., Calin G.A., Pantel K. Clinical relevance of circulating cell-free microRNAs in cancer. Nat. Rev. Clin. Oncol. 2014, 11:145-156.
33. Scott G.K., Mattie M.D., Berger C.E., Benz S.C., Benz C.C. Rapid alteration of microRNA levels by histone deacetylase inhibition. Cancer Res. 2006, 66:1277-1281.
34. Semenov D.V., Baryakin D.N., Brenner E.V., Kurilshikov A.M., Vasiliev G.V., Bryzgalov L.A., Chikova E.D., Filippova J.A., Kuligina E.V., Richter V.A. Unbiased approach to profile the variety of small non-coding RNA of human blood plasma with massively parallel sequencing technology. Expert Opin. Biol. Ther. 2012, 12(Suppl. 1):S43-S51.
35. Shu J., Chiang K., Zempleni J., Cui J. Computational characterization of exogenous microRNAs that can be transferred into human circulation. PLoS One 2015, 10:e0140587.
36. Skalsky R.L., Corcoran D.L., Gottwein E., Frank C.L., Kang D., Hafner M., Nusbaum J.D., Feederle R., Delecluse H.J., Luftig M.A., et al. The viral and cellular microRNA targetome in lymphoblastoid cell lines. PLoS Pathog. 2012, 8:e1002484.
37. Tudor S., Giza D.E., Lin H.Y., Fabris L., Yoshiaki K., D'Abundo L., Toale K.M., Shimizu M., Ferracin M., Challagundla K.B., et al. Cellular and Kaposi's sarcoma-associated herpes virus microRNAs in sepsis and surgical trauma. Cell Death Dis. 2014, 5:e1559.
38. Vickers K.C., Palmisano B.T., Shoucri B.M., Shamburek R.D., Remaley A.T. MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins. Nat. Cell Biol. 2011, 13:423-433.
39. Wang K., Zhang S., Weber J., Baxter D., Galas D.J. Export of microRNAs and microRNA-protective protein by mammalian cells. Nucleic Acids Res. 2010, 38:7248-7259.
40. Weber J.A., Baxter D.H., Zhang S., Huang D.Y., Huang K.H., Lee M.J., Galas D.J., Wang K. The microRNA spectrum in 12 body fluids. Clin. Chem. 2010, 56:1733-1741.
41. Weiland M., Gao X.H., Zhou L., Mi Q.S. Small RNAs have a large impact: circulating microRNAs as biomarkers for human diseases. RNA Biol. 2012, 9:850-859.
42. Witwer K.W. XenomiRs and miRNA homeostasis in health and disease: evidence that diet and dietary miRNAs directly and indirectly influence circulating miRNA profiles. RNA Biol. 2012, 9:1147-1154.
43. Witwer K.W., McAlexander M.A., Queen S.E., Adams R.J. Real-time quantitative PCR and droplet digital PCR for plant miRNAs in mammalian blood provide little evidence for general uptake of dietary miRNAs: limited evidence for general uptake of dietary plant xenomiRs. RNA Biol. 2013, 10:1080-1086.
44. Yu B., Yang Z., Li J., Minakhina S., Yang M., Padgett R.W., Steward R., Chen X. Methylation as a crucial step in plant microRNA biogenesis. Science 2005, 307:932-935.
45. Yu J., Wang F., Yang G.H., Wang F.L., Ma Y.N., Du Z.W., Zhang J.W. Human microRNA clusters: genomic organization and expression profile in leukemia cell lines. Biochem. Biophys. Res. Commun. 2006, 349:59-68.
46. Zhang G., Zong J., Lin S., Verhoeven R.J., Tong S., Chen Y., Ji M., Cheng W., Tsao S.W., Lung M., et al. Circulating Epstein-Barr virus microRNAs miR-BART7 and miR-BART13 as biomarkers for nasopharyngeal carcinoma diagnosis and treatment. Int. J. Cancer 2015, 136:E301-E312.
47. Zhang L., Hou D., Chen X., Li D., Zhu L., Zhang Y., Li J., Bian Z., Liang X., Cai X., et al. Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA. Cell Res. 2012, 22:107-126.
48. Zhang Y., Wiggins B.E., Lawrence C., Petrick J., Ivashuta S., Heck G. Analysis of plant-derived miRNAs in animal small RNA datasets. BMC Genom. 2012, 13:381.
49. Zhang Q., Xu J., Chen Q., Chen X., Zen K., Zhang C.Y. Selective secretion of microRNA in CNS system. Protein Cell 2013, 4:243-247.
50. Zhao Y., Mo B., Chen X. Mechanisms that impact microRNA stability in plants. RNA Biol. 2012, 9:1218-1223.
51. Zhou C., Xie Z., Gao L., Liu C., Ai J., Zhang L., Shen K. Profiling of EBV-encoded microRNAs in EBV-associated hemophagocytic lymphohistiocytosis. Tohoku J. Exp. Med. 2015, 237:117-126.