-
1
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
PMID: 19167326; PubMed Central PMCID: PMC3794896
-
Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell. 2009; 136(2):215-33. doi: 10.1016/j.cell.2009.01.002 PMID: 19167326; PubMed Central PMCID: PMC3794896.
-
(2009)
Cell
, vol.136
, Issue.2
, pp. 215-233
-
-
Bartel, D.P.1
-
2
-
-
77953629046
-
Regulation of mRNA translation and stability by microRNAs
-
PMID: 20533884
-
Fabian MR, Sonenberg N, Filipowicz W. Regulation of mRNA translation and stability by microRNAs. Annual review of biochemistry. 2010; 79:351-79. doi: 10.1146/annurev-biochem-060308-103103 PMID: 20533884.
-
(2010)
Annual Review of Biochemistry
, vol.79
, pp. 351-379
-
-
Fabian, M.R.1
Sonenberg, N.2
Filipowicz, W.3
-
3
-
-
84891818318
-
miRBase: Annotating high confidence microRNAs using deep sequencing data
-
PMID: 24275495; PubMed Central PMCID: PMC3965103
-
Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic acids research. 2014; 42(Database issue):D68-73. doi: 10.1093/nar/gkt1181 PMID: 24275495; PubMed Central PMCID: PMC3965103.
-
(2014)
Nucleic Acids Research
, vol.42
, Issue.DATABASE ISSUE
, pp. D68-D73
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
4
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
PMID: 18955434; PubMed Central PMCID: PMC2612969
-
Friedman RC, Farh KK, Burge CB, Bartel DP. Most mammalian mRNAs are conserved targets of microRNAs. Genome research. 2009; 19(1):92-105. doi: 10.1101/gr.082701.108 PMID: 18955434; PubMed Central PMCID: PMC2612969.
-
(2009)
Genome Research
, vol.19
, Issue.1
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
5
-
-
84907255137
-
MicroRNAs are absorbed in biologically meaningful amounts from nutritionally relevant doses of cow milk and affect gene expression in peripheral blood mononuclear cells, HEK-293 kidney cell cultures, and mouse livers
-
PMID: 25122645; PubMed Central PMCID: PMC4162473
-
Baier SR, Nguyen C, Xie F, Wood JR, Zempleni J. MicroRNAs are absorbed in biologically meaningful amounts from nutritionally relevant doses of cow milk and affect gene expression in peripheral blood mononuclear cells, HEK-293 kidney cell cultures, and mouse livers. The Journal of nutrition. 2014; 144(10):1495-500. doi: 10.3945/jn.114.196436 PMID: 25122645; PubMed Central PMCID: PMC4162473.
-
(2014)
The Journal of Nutrition
, vol.144
, Issue.10
, pp. 1495-1500
-
-
Baier, S.R.1
Nguyen, C.2
Xie, F.3
Wood, J.R.4
Zempleni, J.5
-
6
-
-
84865339380
-
Bovine milk contains microRNA and messenger RNA that are stable under degradative conditions
-
Epub 2012/08/25. PMID: 22916887
-
Izumi H, Kosaka N, Shimizu T, Sekine K, Ochiya T, Takase M. Bovine milk contains microRNA and messenger RNA that are stable under degradative conditions. Journal of dairy science. 2012; 95(9):4831-41. Epub 2012/08/25. doi: 10.3168/jds.2012-5489 PMID: 22916887.
-
(2012)
Journal of Dairy Science
, vol.95
, Issue.9
, pp. 4831-4841
-
-
Izumi, H.1
Kosaka, N.2
Shimizu, T.3
Sekine, K.4
Ochiya, T.5
Takase, M.6
-
7
-
-
84864502473
-
A forward genetic screen reveals roles for Nfkbid, Zeb1, and Ruvbl2 in humoral immunity
-
Epub 2012/07/05. PMID: 22761313; PubMed Central PMCID: PMC3411946
-
Arnold CN, Pirie E, Dosenovic P, McInerney GM, Xia Y, Wang N, et al. A forward genetic screen reveals roles for Nfkbid, Zeb1, and Ruvbl2 in humoral immunity. Proceedings of the National Academy of Sciences of the United States of America. 2012; 109(31):12286-93. Epub 2012/07/05. doi: 10.1073/pnas.1209134109 PMID: 22761313; PubMed Central PMCID: PMC3411946.
-
(2012)
Proceedings of the National Academy of Sciences of the United States of America
, vol.109
, Issue.31
, pp. 12286-12293
-
-
Arnold, C.N.1
Pirie, E.2
Dosenovic, P.3
McInerney, G.M.4
Xia, Y.5
Wang, N.6
-
8
-
-
84861970489
-
Differential microRNA expression in peripheral blood mononuclear cells from Graves' disease patients
-
PMID: 22456620
-
Liu R, Ma X, Xu L, Wang D, Jiang X, Zhu W, et al. Differential microRNA expression in peripheral blood mononuclear cells from Graves' disease patients. The Journal of clinical endocrinology and metabolism. 2012; 97(6):E968-E72. doi: 10.1210/jc.2011-2982 PMID: 22456620.
-
(2012)
The Journal of Clinical Endocrinology and Metabolism
, vol.97
, Issue.6
, pp. E968-E972
-
-
Liu, R.1
Ma, X.2
Xu, L.3
Wang, D.4
Jiang, X.5
Zhu, W.6
-
9
-
-
84855502918
-
Exogenous plant MIR168a specifically targets mammalian LDLRAP1: Evidence of cross-kingdom regulation by microRNA
-
PMID: 21931358; PubMed Central PMCID: PMC3351925
-
Zhang L, Hou D, Chen X, Li D, Zhu L, Zhang Y, et al. Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA. Cell research. 2012; 22(1):107-26. doi: 10.1038/cr.2011.158 PMID: 21931358; PubMed Central PMCID: PMC3351925.
-
(2012)
Cell Research
, vol.22
, Issue.1
, pp. 107-126
-
-
Zhang, L.1
Hou, D.2
Chen, X.3
Li, D.4
Zhu, L.5
Zhang, Y.6
-
10
-
-
84880852727
-
Ineffective delivery of diet-derived microRNAs to recipient animal organisms
-
Epub 2013/05/15 PMID: 23669076; PubMed Central PMCID: PMC3849158
-
Snow JW, Hale AE, Isaacs SK, Baggish AL, Chan SY. Ineffective delivery of diet-derived microRNAs to recipient animal organisms. RNA biology. 2013; 10(7):1107-16. Epub 2013/05/15. doi: 10.4161/rna.24909 PMID: 23669076; PubMed Central PMCID: PMC3849158.
-
(2013)
RNA Biology
, vol.10
, Issue.7
, pp. 1107-1116
-
-
Snow, J.W.1
Hale, A.E.2
Isaacs, S.K.3
Baggish, A.L.4
Chan, S.Y.5
-
11
-
-
84887497048
-
Lack of detectable oral bioavailability of plant microRNAs after feeding in mice
-
Epub 2013/11/12. PMID: 24213763
-
Dickinson B, Zhang Y, Petrick JS, Heck G, Ivashuta S, Marshall WS. Lack of detectable oral bioavailability of plant microRNAs after feeding in mice. Nature biotechnology. 2013; 31(11):965-7. Epub 2013/11/12. doi: 10.1038/nbt.2737 PMID: 24213763.
-
(2013)
Nature Biotechnology
, vol.31
, Issue.11
, pp. 965-967
-
-
Dickinson, B.1
Zhang, Y.2
Petrick, J.S.3
Heck, G.4
Ivashuta, S.5
Marshall, W.S.6
-
12
-
-
84887417967
-
Reply to Lack of detectable oral bioavailability of plant microRNAs after feeding in mice
-
Epub 2013/11/12. PMID: 24213764
-
Chen X, Zen K, Zhang CY. Reply to Lack of detectable oral bioavailability of plant microRNAs after feeding in mice. Nature biotechnology. 2013; 31(11):967-9. Epub 2013/11/12. doi: 10.1038/nbt.2741 PMID: 24213764.
-
(2013)
Nature Biotechnology
, vol.31
, Issue.11
, pp. 967-969
-
-
Chen, X.1
Zen, K.2
Zhang, C.Y.3
-
13
-
-
84870930338
-
The complex exogenous RNA spectra in human plasma: An interface with human gut biota?
-
Epub 2012/12/20. PMID: 23251414; PubMed Central PMCID: PMC3519536
-
Wang K, Li H, Yuan Y, Etheridge A, Zhou Y, Huang D, et al. The complex exogenous RNA spectra in human plasma: an interface with human gut biota? PLoS ONE. 2012; 7(12):e51009. Epub 2012/12/20. doi: 10.1371/journal.pone.0051009 PMID: 23251414; PubMed Central PMCID: PMC3519536.
-
(2012)
PLoS ONE
, vol.7
, Issue.12
-
-
Wang, K.1
Li, H.2
Yuan, Y.3
Etheridge, A.4
Zhou, Y.5
Huang, D.6
-
14
-
-
34248638447
-
Evolutionary conservation of microRNA regulatory circuits: An examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny
-
PMID: 17465887
-
Lee CT, Risom T, Strauss WM. Evolutionary conservation of microRNA regulatory circuits: an examination of microRNA gene complexity and conserved microRNA-target interactions through metazoan phylogeny. DNA and cell biology. 2007; 26(4):209-18. doi: 10.1089/dna.2006.0545 PMID: 17465887.
-
(2007)
DNA and Cell Biology
, vol.26
, Issue.4
, pp. 209-218
-
-
Lee, C.T.1
Risom, T.2
Strauss, W.M.3
-
15
-
-
84884728193
-
Species-specific microRNA regulation influences phenotypic variability: Perspectives on species-specific microRNA regulation
-
PMID: 23864354
-
Mor E, Shomron N. Species-specific microRNA regulation influences phenotypic variability: perspectives on species-specific microRNA regulation. BioEssays: news and reviews in molecular, cellular and developmental biology. 2013; 35(10):881-8. doi: 10.1002/bies.201200157 PMID: 23864354.
-
(2013)
BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology
, vol.35
, Issue.10
, pp. 881-888
-
-
Mor, E.1
Shomron, N.2
-
16
-
-
39049169222
-
Ab initio identification of human microRNAs based on structure motifs
-
PMID: 18088431; PubMed Central PMCID: PMC2238772
-
Brameier M, Wiuf C. Ab initio identification of human microRNAs based on structure motifs. BMC bioinformatics. 2007; 8:478. doi: 10.1186/1471-2105-8-478 PMID: 18088431; PubMed Central PMCID: PMC2238772.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 478
-
-
Brameier, M.1
Wiuf, C.2
-
17
-
-
84928809825
-
The multiMiR R package and database: Integration of microRNA-target interactions along with their disease and drug associations
-
PMID: 25063298; PubMed Central PMCID: PMC4176155
-
Ru Y, Kechris KJ, Tabakoff B, Hoffman P, Radcliffe RA, Bowler R, et al. The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations. Nucleic acids research. 2014; 42(17):e133. doi: 10.1093/nar/gku631 PMID: 25063298; PubMed Central PMCID: PMC4176155.
-
(2014)
Nucleic Acids Research
, vol.42
, Issue.17
, pp. e133
-
-
Ru, Y.1
Kechris, K.J.2
Tabakoff, B.3
Hoffman, P.4
Radcliffe, R.A.5
Bowler, R.6
-
18
-
-
78650816392
-
MiRenSVM: Towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features
-
PMID: 21172046; PubMed Central PMCID: PMC3024864
-
Ding J, Zhou S, Guan J. MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features. BMC bioinformatics. 2010; 11 Suppl 11:S11. doi: 10.1186/1471-2105-11-S11-S11 PMID: 21172046; PubMed Central PMCID: PMC3024864.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. S11
-
-
Ding, J.1
Zhou, S.2
Guan, J.3
-
19
-
-
64549116289
-
microPred: Effective classification of pre-miRNAs for human miRNA gene prediction
-
PMID: 19233894
-
Batuwita R, Palade V. microPred: effective classification of pre-miRNAs for human miRNA gene prediction. Bioinformatics. 2009; 25(8):989-95. doi: 10.1093/bioinformatics/btp107 PMID: 19233894.
-
(2009)
Bioinformatics
, vol.25
, Issue.8
, pp. 989-995
-
-
Batuwita, R.1
Palade, V.2
-
20
-
-
34249302620
-
Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells
-
PMID: 17486113
-
Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol. 2007; 9(6):654-9. doi: 10.1038/ncb1596 PMID: 17486113.
-
(2007)
Nat Cell Biol
, vol.9
, Issue.6
, pp. 654-659
-
-
Valadi, H.1
Ekstrom, K.2
Bossios, A.3
Sjostrand, M.4
Lee, J.J.5
Lotvall, J.O.6
-
21
-
-
57849130395
-
Detection of microRNA expression in human peripheral blood microvesicles
-
PMID: 19002258; PubMed Central PMCID: PMC2577891
-
Hunter MP, Ismail N, Zhang X, Aguda BD, Lee EJ, Yu L, et al. Detection of microRNA expression in human peripheral blood microvesicles. PloS one. 2008; 3(11):e3694. doi: 10.1371/journal.pone.0003694 PMID: 19002258; PubMed Central PMCID: PMC2577891.
-
(2008)
PloS One
, vol.3
, Issue.11
-
-
Hunter, M.P.1
Ismail, N.2
Zhang, X.3
Aguda, B.D.4
Lee, E.J.5
Yu, L.6
-
22
-
-
84857975438
-
Microparticles: Major transport vehicles for distinct microRNAs in circulation
-
PMID: 22258631; PubMed Central PMCID: PMC3291092
-
Diehl P, Fricke A, Sander L, Stamm J, Bassler N, Htun N, et al. Microparticles: major transport vehicles for distinct microRNAs in circulation. Cardiovasc Res. 2012; 93(4):633-44. doi: 10.1093/cvr/cvs007 PMID: 22258631; PubMed Central PMCID: PMC3291092.
-
(2012)
Cardiovasc Res
, vol.93
, Issue.4
, pp. 633-644
-
-
Diehl, P.1
Fricke, A.2
Sander, L.3
Stamm, J.4
Bassler, N.5
Htun, N.6
-
23
-
-
80052381608
-
Characterization of extracellular circulating microRNA
-
PMID: 21609964; PubMed Central PMCID: PMC3167594
-
Turchinovich A, Weiz L, Langheinz A, Burwinkel B. Characterization of extracellular circulating microRNA. Nucleic acids research. 2011; 39(16):7223-33. doi: 10.1093/nar/gkr254 PMID: 21609964; PubMed Central PMCID: PMC3167594.
-
(2011)
Nucleic Acids Research
, vol.39
, Issue.16
, pp. 7223-7233
-
-
Turchinovich, A.1
Weiz, L.2
Langheinz, A.3
Burwinkel, B.4
-
24
-
-
79953202200
-
Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma
-
PMID: 21383194; PubMed Central PMCID: PMC3064324
-
Arroyo JD, Chevillet JR, Kroh EM, Ruf IK, Pritchard CC, Gibson DF, et al. Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma. Proceedings of the National Academy of Sciences of the United States of America. 2011; 108(12):5003-8. doi: 10.1073/pnas.1019055108 PMID: 21383194; PubMed Central PMCID: PMC3064324.
-
(2011)
Proceedings of the National Academy of Sciences of the United States of America
, vol.108
, Issue.12
, pp. 5003-5008
-
-
Arroyo, J.D.1
Chevillet, J.R.2
Kroh, E.M.3
Ruf, I.K.4
Pritchard, C.C.5
Gibson, D.F.6
-
25
-
-
78149484489
-
The microRNA spectrum in 12 body fluids
-
PMID: 20847327
-
Weber JA, Baxter DH, Zhang S, Huang DY, Huang KH, Lee MJ, et al. The microRNA spectrum in 12 body fluids. Clinical chemistry. 2010; 56(11):1733-41. doi: 10.1373/clinchem.2010.147405 PMID: 20847327.
-
(2010)
Clinical Chemistry
, vol.56
, Issue.11
, pp. 1733-1741
-
-
Weber, J.A.1
Baxter, D.H.2
Zhang, S.3
Huang, D.Y.4
Huang, K.H.5
Lee, M.J.6
-
26
-
-
84934946413
-
Dietary MicroRNA Database (DMD): An Archive Database and Analytic Tool for Food-Borne microRNAs
-
PMID: 26030752; PubMed Central PMCID: PMC4451068
-
Chiang K, Shu J, Zempleni J, Cui J. Dietary MicroRNA Database (DMD): An Archive Database and Analytic Tool for Food-Borne microRNAs. PloS one. 2015; 10(6):e0128089. doi: 10.1371/journal.pone.0128089 PMID: 26030752; PubMed Central PMCID: PMC4451068.
-
(2015)
PloS One
, vol.10
, Issue.6
-
-
Chiang, K.1
Shu, J.2
Zempleni, J.3
Cui, J.4
-
27
-
-
84858444838
-
ExoCarta 2012: Database of exosomal proteins, RNA and lipids
-
PMID: 21989406; PubMed Central PMCID: PMC3245025
-
Mathivanan S, Fahner CJ, Reid GE, Simpson RJ. ExoCarta 2012: database of exosomal proteins, RNA and lipids. Nucleic acids research. 2012; 40(Database issue):D1241-4. doi: 10.1093/nar/gkr828 PMID: 21989406; PubMed Central PMCID: PMC3245025.
-
(2012)
Nucleic Acids Research
, vol.40
, Issue.DATABASE ISSUE
, pp. D1241-D1244
-
-
Mathivanan, S.1
Fahner, C.J.2
Reid, G.E.3
Simpson, R.J.4
-
28
-
-
84925267233
-
EVpedia: A community web portal for extracellular vesicles research
-
PMID: 25388151; PubMed Central PMCID: PMC4375401
-
Kim DK, Lee J, Kim SR, Choi DS, Yoon YJ, Kim JH, et al. EVpedia: a community web portal for extracellular vesicles research. Bioinformatics. 2015; 31(6):933-9. doi: 10.1093/bioinformatics/btu741 PMID: 25388151; PubMed Central PMCID: PMC4375401.
-
(2015)
Bioinformatics
, vol.31
, Issue.6
, pp. 933-939
-
-
Kim, D.K.1
Lee, J.2
Kim, S.R.3
Choi, D.S.4
Yoon, Y.J.5
Kim, J.H.6
-
29
-
-
3242736704
-
Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs
-
PMID: 15260970
-
Meister G, Landthaler M, Patkaniowska A, Dorsett Y, Teng G, Tuschl T. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Molecular cell. 2004; 15(2):185-97. doi: 10.1016/j.molcel.2004.07.007 PMID: 15260970.
-
(2004)
Molecular Cell
, vol.15
, Issue.2
, pp. 185-197
-
-
Meister, G.1
Landthaler, M.2
Patkaniowska, A.3
Dorsett, Y.4
Teng, G.5
Tuschl, T.6
-
30
-
-
84877269826
-
Large scale chromosomal mapping of human microRNA structural clusters
-
PMID: 23444140; PubMed Central PMCID: PMC3632110
-
Mathelier A, Carbone A. Large scale chromosomal mapping of human microRNA structural clusters. Nucleic acids research. 2013; 41(8):4392-408. doi: 10.1093/nar/gkt112 PMID: 23444140; PubMed Central PMCID: PMC3632110.
-
(2013)
Nucleic Acids Research
, vol.41
, Issue.8
, pp. 4392-4408
-
-
Mathelier, A.1
Carbone, A.2
-
31
-
-
82055164092
-
ViennaRNA Package 2.0
-
PMID: 22115189; PubMed Central PMCID: PMC3319429
-
Lorenz R, Bernhart SH, Honer Zu Siederdissen C, Tafer H, Flamm C, Stadler PF, et al. ViennaRNA Package 2.0. Algorithms for molecular biology: AMB. 2011; 6:26. doi: 10.1186/1748-7188-6-26 PMID: 22115189; PubMed Central PMCID: PMC3319429.
-
(2011)
Algorithms for Molecular Biology: AMB
, vol.6
, pp. 26
-
-
Lorenz, R.1
Bernhart, S.H.2
Honer Zu Siederdissen, C.3
Tafer, H.4
Flamm, C.5
Stadler, P.F.6
-
32
-
-
48449083700
-
NOBAI: A web server for character coding of geometrical and statistical features in RNA structure
-
PMID: 18448469; PubMed Central PMCID: PMC2447726
-
Knudsen V, Caetano-Anolles G. NOBAI: a web server for character coding of geometrical and statistical features in RNA structure. Nucleic acids research. 2008; 36(Web Server issue):W85-90. doi: 10.1093/nar/gkn220 PMID: 18448469; PubMed Central PMCID: PMC2447726.
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.WEB SERVER ISSUE
, pp. W85-W90
-
-
Knudsen, V.1
Caetano-Anolles, G.2
-
35
-
-
35448932757
-
Derivation of stable microarray cancer-differentiating signatures using consensus scoring of multiple random sampling and gene-ranking consistency evaluation
-
Epub 2007/10/19. PMID: 17942933
-
Tang ZQ, Han LY, Lin HH, Cui J, Jia J, Low BC, et al. Derivation of stable microarray cancer-differentiating signatures using consensus scoring of multiple random sampling and gene-ranking consistency evaluation. Cancer Res. 2007; 67(20):9996-10003. Epub 2007/10/19. doi: 10.1158/0008-5472.CAN-07-1601 PMID: 17942933.
-
(2007)
Cancer Res.
, vol.67
, Issue.20
, pp. 9996-10003
-
-
Tang, Z.Q.1
Han, L.Y.2
Lin, H.H.3
Cui, J.4
Jia, J.5
Low, B.C.6
-
36
-
-
8644247976
-
Feature selection using support vector machines
-
J. Brank MG, N. Milić-frayling, D. Mladenić. Feature selection using support vector machines. In Proc of the 3rd Int Conf on Data Mining Methods and Databases for Engineering, Finance, and Other Fields. 2002.
-
(2002)
Proc of the 3rd Int Conf on Data Mining Methods and Databases for Engineering, Finance, and Other Fields
-
-
Brank, J.1
G, M.2
Milić-Frayling, N.3
Mladenić, D.4
-
38
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
PMID: 1180967
-
Matthews BW. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta. 1975; 405(2):442-51. PMID: 1180967.
-
(1975)
Biochim Biophys Acta
, vol.405
, Issue.2
, pp. 442-451
-
-
Matthews, B.W.1
-
40
-
-
11244293445
-
-
Bradford Book
-
Zhou D, Weston J, Gretton A, Bousquet O, Scholkopf B, editors. Ranking on Data Manifolds2004: Bradford Book.
-
(2004)
Ranking on Data Manifolds
-
-
Zhou, D.1
Weston, J.2
Gretton, A.3
Bousquet, O.4
Scholkopf, B.5
-
41
-
-
47649122926
-
-
ACM New York, NY, USA
-
He J, Li M, Zhang HJ, Tong H, Zhang C, editors. Manifold-ranking based image retrieval2004: ACM New York, NY, USA.
-
(2004)
Manifold-ranking Based Image Retrieval
-
-
He, J.1
Li, M.2
Zhang, H.J.3
Tong, H.4
Zhang, C.5
-
42
-
-
33749179342
-
Generalized Manifold-Ranking-Based Image Retrieval
-
PMID: 17022278
-
He J, Li M, Zhang H, Tong H, Zhang C. Generalized Manifold-Ranking-Based Image Retrieval. IEEE TRANSACTIONS ON IMAGE PROCESSING. 2006; 15(10):3170. PMID: 17022278
-
(2006)
IEEE Transactions on Image Processing
, vol.15
, Issue.10
, pp. 3170
-
-
He, J.1
Li, M.2
Zhang, H.3
Tong, H.4
Zhang, C.5
-
43
-
-
77952061044
-
In-silico prediction of blood-secretory human proteins using a ranking algorithm
-
PMID: 20465853; PubMed Central PMCID: PMC2877692
-
Liu Q, Cui J, Yang Q, Xu Y. In-silico prediction of blood-secretory human proteins using a ranking algorithm. BMC bioinformatics. 2010; 11:250. doi: 10.1186/1471-2105-11-250 PMID: 20465853; PubMed Central PMCID: PMC2877692.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 250
-
-
Liu, Q.1
Cui, J.2
Yang, Q.3
Xu, Y.4
-
44
-
-
84900822264
-
Syndrome classification based on manifold ranking for viral hepatitis
-
PMID: 24174345
-
Zhao YF, He LY, Liu BY, Li J, Li FY, Huo RL, et al. Syndrome classification based on manifold ranking for viral hepatitis. Chinese journal of integrative medicine. 2014; 20(5):394-9. doi: 10.1007/s11655-013-1659-4 PMID: 24174345.
-
(2014)
Chinese Journal of Integrative Medicine
, vol.20
, Issue.5
, pp. 394-399
-
-
Zhao, Y.F.1
He, L.Y.2
Liu, B.Y.3
Li, J.4
Li, F.Y.5
Huo, R.L.6
-
45
-
-
84876935138
-
Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
-
PMID: 23622248; PubMed Central PMCID: PMC3650559
-
Helwak A, Kudla G, Dudnakova T, Tollervey D. Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell. 2013; 153(3):654-65. doi: 10.1016/j.cell.2013.03.043 PMID: 23622248; PubMed Central PMCID: PMC3650559.
-
(2013)
Cell
, vol.153
, Issue.3
, pp. 654-665
-
-
Helwak, A.1
Kudla, G.2
Dudnakova, T.3
Tollervey, D.4
-
46
-
-
84891796290
-
MiRTarBase update 2014: An information resource for experimentally validated miRNA-target interactions
-
PMID: 24304892; PubMed Central PMCID: PMC3965058
-
Hsu SD, Tseng YT, Shrestha S, Lin YL, Khaleel A, Chou CH, et al. miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic acids research. 2014; 42(Database issue):D78-85. doi: 10.1093/nar/gkt1266 PMID: 24304892; PubMed Central PMCID: PMC3965058.
-
(2014)
Nucleic Acids Research
, vol.42
, Issue.DATABASE ISSUE
, pp. D78-D85
-
-
Hsu, S.D.1
Tseng, Y.T.2
Shrestha, S.3
Lin, Y.L.4
Khaleel, A.5
Chou, C.H.6
-
47
-
-
84941087952
-
DIANA-TarBase v7.0: Indexing more than half a million experimentally supported miRNA:mRNA interactions
-
PMID: 25416803
-
Vlachos IS, Paraskevopoulou MD, Karagkouni D, Georgakilas G, Vergoulis T, Kanellos I, et al. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. Nucleic acids research. 2015; 43(Database issue):D153-9. doi: 10.1093/nar/gku1215 PMID: 25416803.
-
(2015)
Nucleic Acids Research
, vol.43
, Issue.DATABASE ISSUE
, pp. D153-D159
-
-
Vlachos, I.S.1
Paraskevopoulou, M.D.2
Karagkouni, D.3
Georgakilas, G.4
Vergoulis, T.5
Kanellos, I.6
-
48
-
-
34250805982
-
MicroRNA targeting specificity in mammals: Determinants beyond seed pairing
-
PMID: 17612493; PubMed Central PMCID: PMC3800283
-
Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, Bartel DP. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Molecular cell. 2007; 27(1):91-105. doi: 10.1016/j.molcel.2007.06.017 PMID: 17612493; PubMed Central PMCID: PMC3800283.
-
(2007)
Molecular Cell
, vol.27
, Issue.1
, pp. 91-105
-
-
Grimson, A.1
Farh, K.K.2
Johnston, W.K.3
Garrett-Engele, P.4
Lim, L.P.5
Bartel, D.P.6
-
49
-
-
44149083586
-
miRDB: A microRNA target prediction and functional annotation database with a wiki interface
-
PMID: 18426918; PubMed Central PMCID: PMC2390791
-
Wang X. miRDB: a microRNA target prediction and functional annotation database with a wiki interface. Rna. 2008; 14(6):1012-7. doi: 10.1261/rna.965408 PMID: 18426918; PubMed Central PMCID: PMC2390791.
-
(2008)
Rna
, vol.14
, Issue.6
, pp. 1012-1017
-
-
Wang, X.1
-
50
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
PMID: 16199517; PubMed Central PMCID: PMC1239896
-
Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of the National Academy of Sciences of the United States of America. 2005; 102(43):15545-50. doi: 10.1073/pnas.0506580102 PMID: 16199517; PubMed Central PMCID: PMC1239896.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.43
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
-
51
-
-
84902553235
-
CAP-miRSeq: A comprehensive analysis pipeline for microRNA sequencing data
-
PMID: 24894665; PubMed Central PMCID: PMC4070549
-
Sun Z, Evans J, Bhagwate A, Middha S, Bockol M, Yan H, et al. CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data. BMC genomics. 2014; 15:423. doi: 10.1186/1471-2164-15-423 PMID: 24894665; PubMed Central PMCID: PMC4070549.
-
(2014)
BMC Genomics
, vol.15
, pp. 423
-
-
Sun, Z.1
Evans, J.2
Bhagwate, A.3
Middha, S.4
Bockol, M.5
Yan, H.6
-
52
-
-
84870431038
-
CD-HIT: Accelerated for clustering the next-generation sequencing data
-
PMID: 23060610; PubMed Central PMCID: PMC3516142
-
Fu L, Niu B, Zhu Z, Wu S, Li W. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics. 2012; 28(23):3150-2. doi: 10.1093/bioinformatics/bts565 PMID: 23060610; PubMed Central PMCID: PMC3516142.
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3150-3152
-
-
Fu, L.1
Niu, B.2
Zhu, Z.3
Wu, S.4
Li, W.5
-
53
-
-
81155131543
-
MaturePred: Efficient identification of microRNAs within novel plant pre-miRNAs
-
PMID: 22110646; PubMed Central PMCID: PMC3217989
-
Xuan P, Guo M, Huang Y, Li W, Huang Y. MaturePred: efficient identification of microRNAs within novel plant pre-miRNAs. PloS one. 2011; 6(11):e27422. doi: 10.1371/journal.pone.0027422 PMID: 22110646; PubMed Central PMCID: PMC3217989.
-
(2011)
PloS One
, vol.6
, Issue.11
-
-
Xuan, P.1
Guo, M.2
Huang, Y.3
Li, W.4
Huang, Y.5
-
54
-
-
84860539158
-
EBV and human microRNAs co-target oncogenic and apoptotic viral and human genes during latency
-
PMID: 22473208; PubMed Central PMCID: PMC3343464
-
Riley KJ, Rabinowitz GS, Yario TA, Luna JM, Darnell RB, Steitz JA. EBV and human microRNAs co-target oncogenic and apoptotic viral and human genes during latency. EMBO J. 2012; 31(9):2207-21. doi: 10.1038/emboj.2012.63 PMID: 22473208; PubMed Central PMCID: PMC3343464.
-
(2012)
EMBO J
, vol.31
, Issue.9
, pp. 2207-2221
-
-
Riley, K.J.1
Rabinowitz, G.S.2
Yario, T.A.3
Luna, J.M.4
Darnell, R.B.5
Steitz, J.A.6
-
55
-
-
77951453340
-
Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
-
PMID: 20219930; PubMed Central PMCID: PMC2863793
-
Riley KJ, Rabinowitz GS, Steitz JA. Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression. J Virol. 2010; 84(10):5148-57. doi: 10.1128/JVI.00110-10 PMID: 20219930; PubMed Central PMCID: PMC2863793.
-
(2010)
J Virol
, vol.84
, Issue.10
, pp. 5148-5157
-
-
Riley, K.J.1
Rabinowitz, G.S.2
Steitz, J.A.3
-
56
-
-
51549106674
-
Small RNA regulators of gene expression
-
PMID: 18805079
-
Neilson JR, Sharp PA. Small RNA regulators of gene expression. Cell. 2008; 134(6):899-902. doi: 10.1016/j.cell.2008.09.006 PMID: 18805079.
-
(2008)
Cell
, vol.134
, Issue.6
, pp. 899-902
-
-
Neilson, J.R.1
Sharp, P.A.2
-
57
-
-
77954257796
-
Secreted monocytic miR-150 enhances targeted endothelial cell migration
-
PMID: 20603081
-
Zhang Y, Liu D, Chen X, Li J, Li L, Bian Z, et al. Secreted monocytic miR-150 enhances targeted endothelial cell migration. Mol Cell. 2010; 39(1):133-44. doi: 10.1016/j.molcel.2010.06.010 PMID: 20603081.
-
(2010)
Mol Cell
, vol.39
, Issue.1
, pp. 133-144
-
-
Zhang, Y.1
Liu, D.2
Chen, X.3
Li, J.4
Li, L.5
Bian, Z.6
-
58
-
-
18044377963
-
Principles of microRNA-target recognition
-
Epub 2005/02/22. PMID: 15723116; PubMed Central PMCID: PMC1043860
-
Brennecke J, Stark A, Russell RB, Cohen SM. Principles of microRNA-target recognition. PLoS Biol. 2005; 3(3):e85. Epub 2005/02/22. doi: 10.1371/journal.pbio.0030085 PMID: 15723116; PubMed Central PMCID: PMC1043860.
-
(2005)
PLoS Biol
, vol.3
, Issue.3
, pp. e85
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
59
-
-
70350271175
-
Sequence features associated with microRNA strand selection in humans and flies
-
Epub 2009/09/08. 1471-2164-10-413 [pii] PMID: 19732433; PubMed Central PMCID: PMC2751786
-
Hu HY, Yan Z, Xu Y, Hu H, Menzel C, Zhou YH, et al. Sequence features associated with microRNA strand selection in humans and flies. BMC Genomics. 2009; 10:413. Epub 2009/09/08. 1471-2164-10-413 [pii] doi: 10.1186/1471-2164-10-413 PMID: 19732433; PubMed Central PMCID: PMC2751786.
-
(2009)
BMC Genomics
, vol.10
, pp. 413
-
-
Hu, H.Y.1
Yan, Z.2
Xu, Y.3
Hu, H.4
Menzel, C.5
Zhou, Y.H.6
-
60
-
-
84855502918
-
Exogenous plant MIR168a specifically targets mammalian LDLRAP1: Evidence of cross-kingdom regulation by microRNA
-
Epub 2011/09/21. PMID: 21931358; PubMed Central PMCID: PMC3351925
-
Zhang L, Hou D, Chen X, Li D, Zhu L, Zhang Y, et al. Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA. Cell research. 2012; 22(1):107-26. Epub 2011/09/21. doi: 10.1038/cr.2011.158 PMID: 21931358; PubMed Central PMCID: PMC3351925.
-
(2012)
Cell Research
, vol.22
, Issue.1
, pp. 107-126
-
-
Zhang, L.1
Hou, D.2
Chen, X.3
Li, D.4
Zhu, L.5
Zhang, Y.6
-
61
-
-
13644256193
-
Methylation as a crucial step in plant microRNA biogenesis
-
Epub 2005/02/12. PMID: 15705854
-
Yu B, Yang Z, Li J, Minakhina S, Yang M, Padgett RW, et al. Methylation as a crucial step in plant microRNA biogenesis. Science. 2005; 307(5711):932-5. Epub 2005/02/12. doi: 10.1126/science.1107130 PMID: 15705854.
-
(2005)
Science
, vol.307
, Issue.5711
, pp. 932-935
-
-
Yu, B.1
Yang, Z.2
Li, J.3
Minakhina, S.4
Yang, M.5
Padgett, R.W.6
-
62
-
-
11844278458
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
-
Epub 2005/01/18. PMID: 15652477
-
Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005; 120(1):15-20. Epub 2005/01/18. S0092867404012607 [pii] doi: 10.1016/j.cell.2004.12.035 PMID: 15652477.
-
(2005)
Cell
, vol.120
, Issue.1
, pp. 15-20
-
-
Lewis, B.P.1
Burge, C.B.2
Bartel, D.P.3
-
63
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
Epub 2004/01/28. PMID: 14744438
-
Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004; 116(2):281-97. Epub 2004/01/28. S0092867404000455 [pii]. PMID: 14744438.
-
(2004)
Cell
, vol.116
, Issue.2
, pp. 281-297
-
-
Bartel, D.P.1
-
64
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Epub 2005/04/05. PMID: 15806104
-
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, Epstein EJ, et al. Combinatorial microRNA target predictions. Nat Genet. 2005; 37(5):495-500. Epub 2005/04/05. doi: 10.1038/ng1536 PMID: 15806104.
-
(2005)
Nat Genet
, vol.37
, Issue.5
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
-
65
-
-
67349123973
-
Redefining microRNA targets
-
Epub 2009/04/21. PMID: 19375315
-
Seitz H. Redefining microRNA targets. Curr Biol. 2009; 19(10):870-3. Epub 2009/04/21. doi: 10.1016/j.cub.2009.03.059 PMID: 19375315.
-
(2009)
Curr Biol
, vol.19
, Issue.10
, pp. 870-873
-
-
Seitz, H.1
-
66
-
-
59049108328
-
How do microRNAs regulate gene expression?
-
Epub 2008/11/22. PMID: 19021530
-
Cannell IG, Kong YW, Bushell M. How do microRNAs regulate gene expression? Biochem Soc Trans. 2008; 36(Pt 6):1224-31. Epub 2008/11/22. doi: 10.1042/BST0361224 PMID: 19021530.
-
(2008)
Biochem Soc Trans
, vol.36
, pp. 1224-1231
-
-
Cannell, I.G.1
Kong, Y.W.2
Bushell, M.3
-
67
-
-
6344281172
-
Identification of mammalian microRNA host genes and transcription units
-
PMID: 15364901; PubMed Central PMCID: PMC524413
-
Rodriguez A, Griffiths-Jones S, Ashurst JL, Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome research. 2004; 14(10A):1902-10. doi: 10.1101/gr.2722704 PMID: 15364901; PubMed Central PMCID: PMC524413.
-
(2004)
Genome Research
, vol.14
, Issue.10
, pp. 1902-1910
-
-
Rodriguez, A.1
Griffiths-Jones, S.2
Ashurst, J.L.3
Bradley, A.4
|