Specific protein changes contribute to the differential muscle mass loss during ageing

Proteomics

Volumn 16, Issue 4, 2016, Pages 645-656

  Capitanio, Daniele ^a,b   Vasso, Michele ^c   De Palma, Sara ^c   Fania, Chiara ^a,b   Torretta, Enrica ^a,b   Cammarata, Francesco P ^c   Magnaghi, Valerio ^d   Procacci, Patrizia ^a   Gelfi, Cecilia ^a,b,c  

^a UNIVERSITY OF MILAN   (Italy)

^b IRCCS POLICLINICO SAN DONATO   (Italy)

^c CNR   (Italy)

^d UNIVERSITY OF MILAN   (Italy)

Author keywords

2D DIGE; Animal proteomics; Intermediate metabolism; Mass spectrometry; Muscle ageing; Muscle proteome

Indexed keywords

DIHYDROLIPOAMIDE ACETYLTRANSFERASE; MUSCLE PROTEIN; MYOGLOBIN; MYOSIN HEAVY CHAIN; NUCLEAR PROTEIN; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE ALPHA SUBUNIT; UNCLASSIFIED DRUG;

AEROBIC METABOLISM; AGED; AGING; ANIMAL TISSUE; ARTICLE; AUTOPHAGY; BIOCHEMICAL ANALYSIS; CELL NUCLEUS; CONTROLLED STUDY; FUNCTIONAL PROTEOMICS; GASTROCNEMIUS MUSCLE; HOMEOSTASIS; IMMUNOBLOTTING; MALE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MUSCLE ATROPHY; MUSCLE MASS; MUSCLE METABOLISM; NONHUMAN; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN ACETYLATION; PROTEIN ANALYSIS; QUANTITATIVE ANALYSIS; RAT; RESPIRATORY CHAIN; TRANSMISSION ELECTRON MICROSCOPY; TRICEPS BRACHII MUSCLE; TWO DIMENSIONAL GEL ELECTROPHORESIS; ANIMAL; MATRIX-ASSISTED LASER DESORPTION-IONIZATION MASS SPECTROMETRY; METABOLISM; MITOCHONDRION; MUSCLE DISEASE; PATHOLOGY; PHYSIOLOGY; PROTEOMICS; SKELETAL MUSCLE; SPRAGUE DAWLEY RAT; TWO DIMENSIONAL DIFFERENCE GEL ELECTROPHORESIS;

AGING; ANIMALS; AUTOPHAGY; MALE; MITOCHONDRIA; MUSCLE PROTEINS; MUSCLE, SKELETAL; MUSCULAR DISEASES; MYOSIN HEAVY CHAINS; PROTEOMICS; RATS, SPRAGUE-DAWLEY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TWO-DIMENSIONAL DIFFERENCE GEL ELECTROPHORESIS;

EID: 84958523541     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201500395     Document Type: Article

References (42)

1. Hurley, B. F., Age, gender, and muscular strength. J. Gerontol A. Biol. Sci. Med. Sci. 1995, 50 Spec No, 41-44.
2. Ciciliot, S., Rossi, A. C., Dyar, K. A., Blaauw, B., Schiaffino, S., Muscle type and fiber type specificity in muscle wasting. Int. J. Biochem. Cell Biol. 2013, 45, 2191-2199.
3. Fujisawa, K., Some observations on the skeletal musculature of aged rats. I. Histological aspects. J. Neurol. Sci. 1974, 22, 353-366.
4. Grimby, G., Danneskiold-Samsoe, B., Hvid, K., Saltin, B., Morphology and enzymatic capacity in arm and leg muscles in 78-81 year old men and women. Acta Physiol. Scand. 1982, 115, 125-134.
5. Nygaard, E., Sanchez, J., Intramuscular variation of fiber types in the brachial biceps and the lateral vastus muscles of elderly men: How representative is a small biopsy sample? Anat Rec. 1982, 203, 451-459.
6. McDonagh, M. J., White, M. J., Davies, C. T., Different effects of ageing on the mechanical properties of human arm and leg muscles. Gerontology 1984, 30, 49-54.
7. Oertel, G., Changes in human skeletal muscles due to ageing. Histological and histochemical observations on autopsy material. Acta Neuropathol. 1986, 69, 309-313.
8. De Palma, S., Leone, R., Grumati, P., Vasso, M. et al., Changes in muscle cell metabolism and mechanotransduction are associated with myopathic phenotype in a mouse model of collagen VI deficiency. PLoS One 2013, 8, e56716.
9. Qattan, A. T., Radulovic, M., Crawford, M., Godovac-Zimmermann, J., Spatial distribution of cellular function: the partitioning of proteins between mitochondria and the nucleus in MCF7 breast cancer cells. J. Proteome Res. 2012, 11, 6080-6101.
10. Donoghue, P., Staunton, L., Mullen, E., Manning, G., Ohlendieck, K., DIGE analysis of rat skeletal muscle proteins using nonionic detergent phase extraction of young adult versus aged gastrocnemius tissue. J. Proteomics 2010, 73, 1441-1453.
11. Piec, I., Listrat, A., Alliot, J., Chambon, C. et al., Differential proteome analysis of aging in rat skeletal muscle. FASEB J. 2005, 19, 1143-1145.
12. Hwang, C. Y., Kim, K., Choi, J. Y., Bahn, Y. J. et al., Quantitative proteome analysis of age-related changes in mouse gastrocnemius muscle using mTRAQ. Proteomics 2014, 14, 121-132.
13. Chaves, D. F., Carvalho, P. C., Lima, D. B., Nicastro, H. et al., Comparative proteomic analysis of the aging soleus and extensor digitorum longus rat muscles using TMT labeling and mass spectrometry. J. Proteome Res. 2013, 12, 4532-4546.
14. Ibebunjo, C., Chick, J. M., Kendall, T., Eash, J. K. et al., Genomic and proteomic profiling reveals reduced mitochondrial function and disruption of the neuromuscular junction driving rat sarcopenia. Mol. Cell Biol. 2013, 33, 194-212.
15. Gannon, J., Ohlendieck, K., Subproteomic analysis of basic proteins in aged skeletal muscle following offgel pre-fractionation. Mol. Med. Rep. 2012, 5, 993-1000.
16. Lancaster, T. S., Jefferson, S. J., Hunter, J. C., Lopez, V. et al., Quantitative proteomic analysis reveals novel mitochondrial targets of estrogen deficiency in the aged female rat heart. Physiol. Genomics 2012, 44, 957-969.
17. Lanza, I. R., Zabielski, P., Klaus, K. A., Morse, D. M.et al., Chronic caloric restriction preserves mitochondrial function in senescence without increasing mitochondrial biogenesis. Cell Metab. 2012, 16, 777-788.
18. McDonagh, B., Sakellariou, G. K., Smith, N. T., Brownridge, P., Jackson, M. J., Differential cysteine labeling and global label-free proteomics reveals an altered metabolic state in skeletal muscle aging. J. Proteome Res. 2014, 13, 5008-5021.
19. Capitanio, D., Vigano, A., Ricci, E., Cerretelli, P. et al., Comparison of protein expression in human deltoideus and vastus lateralis muscles using two-dimensional gel electrophoresis. Proteomics 2005, 5, 2577-2586.
20. Gelfi, C., Vigano, A., Ripamonti, M., Pontoglio, A. et al., The human muscle proteome in aging. J. Proteome Res. 2006, 5, 1344-1353.
21. Capitanio, D., Vasso, M., Fania, C., Moriggi, M. et al., Comparative proteomic profile of rat sciatic nerve and gastrocnemius muscle tissues in ageing by 2-D DIGE. Proteomics 2009, 9, 2004-2020.
22. Baraibar, M. A., Gueugneau, M., Duguez, S., Butler-Browne, G. et al., Expression and modification proteomics during skeletal muscle ageing. Biogerontology 2013, 14, 339-352.
23. Capitanio, D., Vasso, M., Ratti, A., Grignaschi, G. et al., Molecular signatures of amyotrophic lateral sclerosis disease progression in hind and forelimb muscles of an SOD1(G93A) mouse model. Antioxid. Redox. Signal 2012, 17, 1333-1350.
24. Moriggi, M., Vasso, M., Fania, C., Capitanio, D. et al., Long term bed rest with and without vibration exercise countermeasures: effects on human muscle protein dysregulation. Proteomics 2010, 10, 3756-3774.
25. Patel, V. P., Chu, C. T., Nuclear transport, oxidative stress, and neurodegeneration. Int. J. Clin. Exp. Pathol. 2011, 4, 215-229.
26. Kodiha, M., Stochaj, U., Nuclear transport: a switch for the oxidative stress-signaling circuit? J. Signal Transduct. 2012, 2012, 208650.
27. Delsite, R., Kachhap, S., Anbazhagan, R., Gabrielson, E., Singh, K. K., Nuclear genes involved in mitochondria-to-nucleus communication in breast cancer cells. Mol. Cancer 2002, 1, 6-15.
28. Butow, R. A., Avadhani, N. G., Mitochondrial signaling: The retrograde response. Mol. Cell 2004, 14, 1-15.
29. Sutendra, G., Kinnaird, A., Dromparis, P., Paulin, R. et al., A nuclear pyruvate dehydrogenase complex is important for the generation of acetyl-CoA and histone acetylation. Cell 2014, 158, 84-97.
30. Kamga, C., Krishnamurthy, S., Shiva, S., Myoglobin and mitochondria: A relationship bound by oxygen and nitric oxide. Nitric Oxide 2012, 26, 251-258.
31. Chueh, F. Y., Leong, K. F., Cronk, R. J., Venkitachalam, S. et al., Nuclear localization of pyruvate dehydrogenase complex-E2 (PDC-E2), a mitochondrial enzyme, and its role in signal transducer and activator of transcription 5 (STAT5)-dependent gene transcription. Cell Signal 2011, 23, 1170-1178.
32. Easlon, E., Tsang, F., Dilova, I., Wang, C. et al., The dihydrolipoamide acetyltransferase is a novel metabolic longevity factor and is required for calorie restriction-mediated life span extension. J. Biol. Chem. 2007, 282, 6161-6171.
33. Walsh, M. E., Bhattacharya, A., Sataranatarajan, K., Qaisar, R. et al., The histone deacetylase inhibitor butyrate improves metabolism and reduces muscle atrophy during aging. Aging Cell 2015, 14, 957-970.
34. De Palma, S., Capitanio, D., Vasso, M., Braghetta, P. et al., Muscle proteomics reveals novel insights into the pathophysiological mechanisms of collagen VI myopathies. J. Proteome Res. 2014, 13, 5022-5030.
35. Gut, P., Verdin, E., The nexus of chromatin regulation and intermediary metabolism. Nature 2013, 502, 489-498.
36. Artal-Sanz, M., Tavernarakis, N., Prohibitin and mitochondrial biology. Trends Endocrinol. Metab. 2009, 20, 394-401.
37. Merkwirth, C., Langer, T., Prohibitin function within mitochondria: essential roles for cell proliferation and cristae morphogenesis. Biochim. Biophys. Acta 2009, 1793, 27-32.
38. van der Laan, M., Bohnert, M., Wiedemann, N., Pfanner, N., Role of MINOS in mitochondrial membrane architecture and biogenesis. Trends Cell Biol. 2012, 22, 185-192.
39. Zerbes, R. M., Bohnert, M., Stroud, D. A., von der Malsburg, K. et al., Role of MINOS in mitochondrial membrane architecture: Cristae morphology and outer membrane interactions differentially depend on mitofilin domains. J. Mol. Biol. 2012, 422, 183-191.
40. Arnoult, D., Grodet, A., Lee, Y. J., Estaquier, J., Blackstone, C., Release of OPA1 during apoptosis participates in the rapid and complete release of cytochrome c and subsequent mitochondrial fragmentation. J. Biol. Chem. 2005, 280, 35742-35750.
41. Rizzuto, R., De Stefani, D., Raffaello, A., Mammucari, C., Mitochondria as sensors and regulators of calcium signalling. Nat. Rev. Mol. Cell Biol. 2012, 13, 566-578.
42. Conboy, I. M., Rando, T. A., Heterochronic parabiosis for the study of the effects of aging on stem cells and their niches. Cell Cycle 2012, 11, 2260-2267.